TCONS_00069646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069646
Unique NameTCONS_00069646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length742

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069646 ID=TCONS_00069646|Name=TCONS_00069646|organism=Clytia hemisphaerica|type=transcript|length=742bp
CAGCAACAAGCTAAGGTAACAAgacaacacaaaaaaaaacaagatattCT
TAGGAAAACTCACCAACAGGAAATATGAAGGTTTTACTCGGACTTTTATT
ATGTGCAGTGGCATCGCAAGCATTCTTATTCAAGAAGATCAAAACTGTGT
CCGAATTGGATGTAAACAAATATTCTGGTCGTTGGTATGAGatgTACAAC
TCATTGATCCAAAgacaaacattcgaaaaaaattcttacTGCACCACTGC
TACTTaccGACTTGCTGCCGACGGTAAAACCATCCTTGTCCATAACTCTG
GTCGTATCAGTGCACCAAAAGGACGATTGAACGCCATCAATGGAACAGCG
TACCAAACCGATGCTGCCAACTTCCCAGGGGAATTAATCGTCAGCTTCCC
AGGAACTCCACAATCCAAGAAAGCTAACTATTTAGTCGTTAAATTGGGAC
CTGAAGTTAATGGTGAATACGCCTACACCATTATTACCTCCAACTACAAA
GCTTTCACATGGATCTTAGCCCGTGATGTCAAATCATTCAGAGCTAACTA
CGAACAAGAAGCTCTAGAATACTTAAAGAATAATGGATACAATTGGTTCT
GGAATCGACCACGAAAAGTTTTCCAAGGTGAAGAATGTATTTATCCACCA
ATGTAAATTTTTCTGACATGTAATTTTATATTATGCTTTTTAAATGTTAA
TTGTCTTGTTGAAATATATTGTCGCTGAACATCATTTAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00069646-protein

>TCONS_00069646-protein ID=TCONS_00069646-protein|Name=TCONS_00069646-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MKVLLGLLLCAVASQAFLFKKIKTVSELDVNKYSGRWYEMYNSLIQRQTF
EKNSYCTTATYRLAADGKTILVHNSGRISAPKGRLNAINGTAYQTDAANF
PGELIVSFPGTPQSKKANYLVVKLGPEVNGEYAYTIITSNYKAFTWILAR
DVKSFRANYEQEALEYLKNNGYNWFWNRPRKVFQGEECIYPPM
Run BLAST on NCBI

transcript from alignment at scaffold_503:238498..240748-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069646 ID=TCONS_00069646|Name=TCONS_00069646|organism=Clytia hemisphaerica|type=transcript|length=2251bp|location=Sequence derived from alignment at scaffold_503:238498..240748- (Clytia hemisphaerica)
CAGCAACAAGCTAAGGTAACAAGACAACACAAAAAAAAACAAGATATTCT
TAGGAAAACTCACCAACAGGAAATATGAAGGTTTTACTCGGACTTTTATT
ATGTGCAGTGGCATCGCAAGCATTCTTATTCAAGAAGATCAAAACTGTGT
CCGAATTGGATGTAAACAAATATTCTGGTCGTTGGTATGAGGTAAGGATG
AAATTTCAAGCTATTTTCTACCACACAATATGTCATTACCGAAATAATCT
GAAATCAACCTTGACCCCTGTGTATAATTGGCTATTTGATAATTATTGAT
ACAATCATGGACAAAATGTTTTAGATAGAGGGGATTTCCATGCGAAATTT
TAAACACCACAAATGATTTTTATGCCCCTTAAACTACAGTTTTGTCGCTG
AGTTTTAACATAAAACTTAAGACTCAAGACCCTCCAAAATCGAAATATTC
AATGGAAGAAAGTGGAAGTGCTAAAATAGCAATTCTCGCCCGAACTTTAA
ATTCTGAAAAACGTTACAATTCACTAAAATCTCACATATATTTCGACCAT
GATTGTAGCGCCAGATAATATTCCCTGGCGTCTAGCAGTAACACAAATAA
AGCCTGGGATACATGGGGACGAGTTTGATTTTCTATAATGTGACTTTGAC
AGTTCTTTACAAACGCGTACATACTCAATCGACCAAACTCTTCAATTTAA
TTTTTTTAGATGTACAACTCATTGATCCAAAGACAAACATTCGAAAAAAA
TTCTTACTGCACCACTGCTACTTGTAAGTTTATTCGTTCAAATTTTTATT
CCTTTGAATTTTTATTCGTTCAAATTTTTATTACAAAGATATTTATTTAA
ATTAGTTATTTATTTAAATTTTCCAAAGAAGAGCAATTTAAGGGTCAAAA
TAGTAAAATTTGGTTAAAACGCCCAAAATGCCTAATTTCTATCAATGAAT
AAGAGCAGGAAAAGAAATAGGCTTCTGCTCATCCTCTAGCGAAGAGAGTT
TCTTATATAGGAAGTATATATCTATAGAGGTCTGCGATTCAGAATAGAAA
AGAAAAAATTGAGGCTTTAAGTGCCAAAAAAAAAAATCAACCGACCCTCA
ACAAAATTTTACTGGTTCTTATCTAGAAAAATATACCTCTTTAGACGGAT
GACAGATAAACTTCCGGTACCGAGGCATTATATAAGCTGTTTTGTTTAAC
CAAACTCACCAAAAGCCATCGATGCCACAACAAAATATCTGCAAAACTTA
ATACTTCCCTGCTTATGTTTATTTTTTCATTTTAGACCGACTTGCTGCCG
ACGGTAAAACCATCCTTGTCCATAACTCTGGTCGTATCAGTGCACCAAAA
GGACGATTGAACGCCATCAATGGAACAGCGTACCAAACCGATGCTGCCAA
CTTCCCAGGGGAATTAATCGTCAGCTTCCCAGGAACTCCACAATCCAAGA
AAGCTAACTGTGAGTTGTGATTTTAACGAATCATTCGACATGACTTTCGT
TGAAATGTCACCACAACACAATACTTAAACAGACCCCTTCTCACAGAACC
ACTAGCACTCCTTCCCACTTGAAGAATTGACCAAAAAATCGTCCCTAGCG
GAAAATTATCCGGCAATTCCAACTGAAAATAATCAAATTAACCAATCTTC
GCTGCAAAATATCATGCTATCCCCCCCTTTCCCACTGGAATTTTATGACT
TAGAACAATGGAATTTAAATCCCCAGCCACAAAAAAATCGAGTTTCAGTT
CGTTATTATTAACCTCACTGGATATATAAATCCTACCCGGTCTCTGAGAA
AACCTTAAAATGTTCTTAGCTTGTTCTTAACATTTCAGCCATCGAAGCCT
CGTGTTCTTATATAGTTTTTTCTTATAAAAAAACAAACGGTTGCAACCTT
TGTATCTAAACTAGAATTTTATTTTTGACTTTATATAGATTTAGTCGTTA
AATTGGGACCTGAAGTTAATGGTGAATACGCCTACACCATTATTACCTCC
AACTACAAAGCTTTCACATGGATCTTAGCCCGTGATGTCAAATCATTCAG
AGCTAACTACGAACAAGAAGCTCTAGAATACTTAAAGAATAATGGATACA
ATTGGTTCTGGAATCGACCACGAAAAGTTTTCCAAGGTGAAGAATGTATT
TATCCACCAATGTAAATTTTTCTGACATGTAATTTTATATTATGCTTTTT
AAATGTTAATTGTCTTGTTGAAATATATTGTCGCTGAACATCATTTAAAA
G

Coding sequence (CDS) from alignment at scaffold_503:238498..240748-

>TCONS_00069646 ID=TCONS_00069646|Name=TCONS_00069646|organism=Clytia hemisphaerica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_503:238498..240748- (Clytia hemisphaerica)
ATTTAGTCGTTAAATTGGGACCTGAAGTTAATGGTGAATACGCCTACACC
ATTATTACCTCCAACTACAAAGCTTTCACATGGATCTTAGCCCGTGATGT
CAAATCATTCAGAGCTAACTACGAACAAGAAGCTCTAGAATACTTAAAGA
ATAATGGATACAATTGGTTCTGGAATCGACCACGAAAAGTTTTCCAAGGT
GAAGAATGTATTTATCCACCAATGTAAACCGACTTGCTGCCGACGGTAAA
ACCATCCTTGTCCATAACTCTGGTCGTATCAGTGCACCAAAAGGACGATT
GAACGCCATCAATGGAACAGCGTACCAAACCGATGCTGCCAACTTCCCAG
GGGAATTAATCGTCAGCTTCCCAGGAACTCCACAATCCAAGAAAGCTAAC
TATGTACAACTCATTGATCCAAAGACAAACATTCGAAAAAAATTCTTACT
GCACCACTGCTACTTATGAAGGTTTTACTCGGACTTTTATTATGTGCAGT
GGCATCGCAAGCATTCTTATTCAAGAAGATCAAAACTGTGTCCGAATTGG
ATGTAAACAAATATTCTGGTCGTTGGTATGAGATTTAGTCGTTAAATTGG
GACCTGAAGTTAATGGTGAATACGCCTACACCATTATTACCTCCAACTAC
AAAGCTTTCACATGGATCTTAGCCCGTGATGTCAAATCATTCAGAGCTAA
CTACGAACAAGAAGCTCTAGAATACTTAAAGAATAATGGATACAATTGGT
TCTGGAATCGACCACGAAAAGTTTTCCAAGGTGAAGAATGTATTTATCCA
CCAATGTAAACCGACTTGCTGCCGACGGTAAAACCATCCTTGTCCATAAC
TCTGGTCGTATCAGTGCACCAAAAGGACGATTGAACGCCATCAATGGAAC
AGCGTACCAAACCGATGCTGCCAACTTCCCAGGGGAATTAATCGTCAGCT
TCCCAGGAACTCCACAATCCAAGAAAGCTAACTATGTACAACTCATTGAT
CCAAAGACAAACATTCGAAAAAAATTCTTACTGCACCACTGCTACTTATG
AAGGTTTTACTCGGACTTTTATTATGTGCAGTGGCATCGCAAGCATTCTT
ATTCAAGAAGATCAAAACTGTGTCCGAATTGGATGTAAACAAATATTCTG
GTCGTTGGTATGAGATTTAGTCGTTAAATTGGGACCTGAAGTTAATGGTG
AATACGCCTACACCATTATTACCTCCAACTACAAAGCTTTCACATGGATC
TTAGCCCGTGATGTCAAATCATTCAGAGCTAACTACGAACAAGAAGCTCT
AGAATACTTAAAGAATAATGGATACAATTGGTTCTGGAATCGACCACGAA
AAGTTTTCCAAGGTGAAGAATGTATTTATCCACCAATGTAAACCGACTTG
CTGCCGACGGTAAAACCATCCTTGTCCATAACTCTGGTCGTATCAGTGCA
CCAAAAGGACGATTGAACGCCATCAATGGAACAGCGTACCAAACCGATGC
TGCCAACTTCCCAGGGGAATTAATCGTCAGCTTCCCAGGAACTCCACAAT
CCAAGAAAGCTAACTATGTACAACTCATTGATCCAAAGACAAACATTCGA
AAAAAATTCTTACTGCACCACTGCTACTTATGAAGGTTTTACTCGGACTT
TTATTATGTGCAGTGGCATCGCAAGCATTCTTATTCAAGAAGATCAAAAC
TGTGTCCGAATTGGATGTAAACAAATATTCTGGTCGTTGGTATGAGATTT
AGTCGTTAAATTGGGACCTGAAGTTAATGGTGAATACGCCTACACCATTA
TTACCTCCAACTACAAAGCTTTCACATGGATCTTAGCCCGTGATGTCAAA
TCATTCAGAGCTAACTACGAACAAGAAGCTCTAGAATACTTAAAGAATAA
TGGATACAATTGGTTCTGGAATCGACCACGAAAAGTTTTCCAAGGTGAAG
AATGTATTTATCCACCAATGTAAACCGACTTGCTGCCGACGGTAAAACCA
TCCTTGTCCATAACTCTGGTCGTATCAGTGCACCAAAAGGACGATTGAAC
GCCATCAATGGAACAGCGTACCAAACCGATGCTGCCAACTTCCCAGGGGA
ATTAATCGTCAGCTTCCCAGGAACTCCACAATCCAAGAAAGCTAACTATG
TACAACTCATTGATCCAAAGACAAACATTCGAAAAAAATTCTTACTGCAC
CACTGCTACTTATGAAGGTTTTACTCGGACTTTTATTATGTGCAGTGGCA
TCGCAAGCATTCTTATTCAAGAAGATCAAAACTGTGTCCGAATTGGATGT
AAACAAATATTCTGGTCGTTGGTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043363XLOC_043363Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069646-exon-scaffold_503-1575043694:240558..240748TCONS_00069646-exon-scaffold_503-1575043694:240558..240748Clytia hemisphaericaexon
TCONS_00069646-exon-scaffold_503-1575043694:239976..240039TCONS_00069646-exon-scaffold_503-1575043694:239976..240039Clytia hemisphaericaexon
TCONS_00069646-exon-scaffold_503-1575043694:239290..239463TCONS_00069646-exon-scaffold_503-1575043694:239290..239463Clytia hemisphaericaexon
TCONS_00069646-exon-scaffold_503-1575043694:238498..238810TCONS_00069646-exon-scaffold_503-1575043694:238498..238810Clytia hemisphaericaexon
TCONS_00069646-exon-scaffold_503-1510915933:240558..240748TCONS_00069646-exon-scaffold_503-1510915933:240558..240748Clytia hemisphaericaexon
TCONS_00069646-exon-scaffold_503-1510915933:239976..240039TCONS_00069646-exon-scaffold_503-1510915933:239976..240039Clytia hemisphaericaexon
TCONS_00069646-exon-scaffold_503-1510915933:239290..239463TCONS_00069646-exon-scaffold_503-1510915933:239290..239463Clytia hemisphaericaexon
TCONS_00069646-exon-scaffold_503-1510915933:238498..238810TCONS_00069646-exon-scaffold_503-1510915933:238498..238810Clytia hemisphaericaexon
TCONS_00069646-exon-scaffold_503-1491911889:240558..240748TCONS_00069646-exon-scaffold_503-1491911889:240558..240748Clytia hemisphaericaexon
TCONS_00069646-exon-scaffold_503-1491911889:239976..240039TCONS_00069646-exon-scaffold_503-1491911889:239976..240039Clytia hemisphaericaexon
TCONS_00069646-exon-scaffold_503-1491911889:239290..239463TCONS_00069646-exon-scaffold_503-1491911889:239290..239463Clytia hemisphaericaexon
TCONS_00069646-exon-scaffold_503-1491911889:238498..238810TCONS_00069646-exon-scaffold_503-1491911889:238498..238810Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069646-proteinTCONS_00069646-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:238498..240748 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.665624	0.713997	1.87459	1.106	0.318958	0.252045	0	0.560809	0.336545	1.18027	1.34873	0.975264	141.394	60.0871	7.82384	42.1431	4.5471	55.2618	56.8181	65.6756	270.039	249.933	209.42	118.996	87.609	140.514	195.866	105.686	2416.44	570.78
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022271Lipocalin_ApoD
IPR012674Calycin
IPR000566Lipocln_cytosolic_FA-bd_dom
IPR022272Lipocalin_CS
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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