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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069646 ID=TCONS_00069646|Name=TCONS_00069646|organism=Clytia hemisphaerica|type=transcript|length=742bp CAGCAACAAGCTAAGGTAACAAgacaacacaaaaaaaaacaagatattCT TAGGAAAACTCACCAACAGGAAATATGAAGGTTTTACTCGGACTTTTATT ATGTGCAGTGGCATCGCAAGCATTCTTATTCAAGAAGATCAAAACTGTGT CCGAATTGGATGTAAACAAATATTCTGGTCGTTGGTATGAGatgTACAAC TCATTGATCCAAAgacaaacattcgaaaaaaattcttacTGCACCACTGC TACTTaccGACTTGCTGCCGACGGTAAAACCATCCTTGTCCATAACTCTG GTCGTATCAGTGCACCAAAAGGACGATTGAACGCCATCAATGGAACAGCG TACCAAACCGATGCTGCCAACTTCCCAGGGGAATTAATCGTCAGCTTCCC AGGAACTCCACAATCCAAGAAAGCTAACTATTTAGTCGTTAAATTGGGAC CTGAAGTTAATGGTGAATACGCCTACACCATTATTACCTCCAACTACAAA GCTTTCACATGGATCTTAGCCCGTGATGTCAAATCATTCAGAGCTAACTA CGAACAAGAAGCTCTAGAATACTTAAAGAATAATGGATACAATTGGTTCT GGAATCGACCACGAAAAGTTTTCCAAGGTGAAGAATGTATTTATCCACCA ATGTAAATTTTTCTGACATGTAATTTTATATTATGCTTTTTAAATGTTAA TTGTCTTGTTGAAATATATTGTCGCTGAACATCATTTAAAAG Run BLAST on NCBI protein sequence of TCONS_00069646-protein >TCONS_00069646-protein ID=TCONS_00069646-protein|Name=TCONS_00069646-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MKVLLGLLLCAVASQAFLFKKIKTVSELDVNKYSGRWYEMYNSLIQRQTF EKNSYCTTATYRLAADGKTILVHNSGRISAPKGRLNAINGTAYQTDAANF PGELIVSFPGTPQSKKANYLVVKLGPEVNGEYAYTIITSNYKAFTWILAR DVKSFRANYEQEALEYLKNNGYNWFWNRPRKVFQGEECIYPPM Run BLAST on NCBI transcript from alignment at scaffold_503:238498..240748- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069646 ID=TCONS_00069646|Name=TCONS_00069646|organism=Clytia hemisphaerica|type=transcript|length=2251bp|location=Sequence derived from alignment at scaffold_503:238498..240748- (Clytia hemisphaerica) CAGCAACAAGCTAAGGTAACAAGACAACACAAAAAAAAACAAGATATTCT
TAGGAAAACTCACCAACAGGAAATATGAAGGTTTTACTCGGACTTTTATT
ATGTGCAGTGGCATCGCAAGCATTCTTATTCAAGAAGATCAAAACTGTGT
CCGAATTGGATGTAAACAAATATTCTGGTCGTTGGTATGAGGTAAGGATG
AAATTTCAAGCTATTTTCTACCACACAATATGTCATTACCGAAATAATCT
GAAATCAACCTTGACCCCTGTGTATAATTGGCTATTTGATAATTATTGAT
ACAATCATGGACAAAATGTTTTAGATAGAGGGGATTTCCATGCGAAATTT
TAAACACCACAAATGATTTTTATGCCCCTTAAACTACAGTTTTGTCGCTG
AGTTTTAACATAAAACTTAAGACTCAAGACCCTCCAAAATCGAAATATTC
AATGGAAGAAAGTGGAAGTGCTAAAATAGCAATTCTCGCCCGAACTTTAA
ATTCTGAAAAACGTTACAATTCACTAAAATCTCACATATATTTCGACCAT
GATTGTAGCGCCAGATAATATTCCCTGGCGTCTAGCAGTAACACAAATAA
AGCCTGGGATACATGGGGACGAGTTTGATTTTCTATAATGTGACTTTGAC
AGTTCTTTACAAACGCGTACATACTCAATCGACCAAACTCTTCAATTTAA
TTTTTTTAGATGTACAACTCATTGATCCAAAGACAAACATTCGAAAAAAA
TTCTTACTGCACCACTGCTACTTGTAAGTTTATTCGTTCAAATTTTTATT
CCTTTGAATTTTTATTCGTTCAAATTTTTATTACAAAGATATTTATTTAA
ATTAGTTATTTATTTAAATTTTCCAAAGAAGAGCAATTTAAGGGTCAAAA
TAGTAAAATTTGGTTAAAACGCCCAAAATGCCTAATTTCTATCAATGAAT
AAGAGCAGGAAAAGAAATAGGCTTCTGCTCATCCTCTAGCGAAGAGAGTT
TCTTATATAGGAAGTATATATCTATAGAGGTCTGCGATTCAGAATAGAAA
AGAAAAAATTGAGGCTTTAAGTGCCAAAAAAAAAAATCAACCGACCCTCA
ACAAAATTTTACTGGTTCTTATCTAGAAAAATATACCTCTTTAGACGGAT
GACAGATAAACTTCCGGTACCGAGGCATTATATAAGCTGTTTTGTTTAAC
CAAACTCACCAAAAGCCATCGATGCCACAACAAAATATCTGCAAAACTTA
ATACTTCCCTGCTTATGTTTATTTTTTCATTTTAGACCGACTTGCTGCCG
ACGGTAAAACCATCCTTGTCCATAACTCTGGTCGTATCAGTGCACCAAAA
GGACGATTGAACGCCATCAATGGAACAGCGTACCAAACCGATGCTGCCAA
CTTCCCAGGGGAATTAATCGTCAGCTTCCCAGGAACTCCACAATCCAAGA
AAGCTAACTGTGAGTTGTGATTTTAACGAATCATTCGACATGACTTTCGT
TGAAATGTCACCACAACACAATACTTAAACAGACCCCTTCTCACAGAACC
ACTAGCACTCCTTCCCACTTGAAGAATTGACCAAAAAATCGTCCCTAGCG
GAAAATTATCCGGCAATTCCAACTGAAAATAATCAAATTAACCAATCTTC
GCTGCAAAATATCATGCTATCCCCCCCTTTCCCACTGGAATTTTATGACT
TAGAACAATGGAATTTAAATCCCCAGCCACAAAAAAATCGAGTTTCAGTT
CGTTATTATTAACCTCACTGGATATATAAATCCTACCCGGTCTCTGAGAA
AACCTTAAAATGTTCTTAGCTTGTTCTTAACATTTCAGCCATCGAAGCCT
CGTGTTCTTATATAGTTTTTTCTTATAAAAAAACAAACGGTTGCAACCTT
TGTATCTAAACTAGAATTTTATTTTTGACTTTATATAGATTTAGTCGTTA
AATTGGGACCTGAAGTTAATGGTGAATACGCCTACACCATTATTACCTCC
AACTACAAAGCTTTCACATGGATCTTAGCCCGTGATGTCAAATCATTCAG
AGCTAACTACGAACAAGAAGCTCTAGAATACTTAAAGAATAATGGATACA
ATTGGTTCTGGAATCGACCACGAAAAGTTTTCCAAGGTGAAGAATGTATT
TATCCACCAATGTAAATTTTTCTGACATGTAATTTTATATTATGCTTTTT
AAATGTTAATTGTCTTGTTGAAATATATTGTCGCTGAACATCATTTAAAA
G Coding sequence (CDS) from alignment at scaffold_503:238498..240748- >TCONS_00069646 ID=TCONS_00069646|Name=TCONS_00069646|organism=Clytia hemisphaerica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_503:238498..240748- (Clytia hemisphaerica) ATTTAGTCGTTAAATTGGGACCTGAAGTTAATGGTGAATACGCCTACACC ATTATTACCTCCAACTACAAAGCTTTCACATGGATCTTAGCCCGTGATGT CAAATCATTCAGAGCTAACTACGAACAAGAAGCTCTAGAATACTTAAAGA ATAATGGATACAATTGGTTCTGGAATCGACCACGAAAAGTTTTCCAAGGT GAAGAATGTATTTATCCACCAATGTAAACCGACTTGCTGCCGACGGTAAA ACCATCCTTGTCCATAACTCTGGTCGTATCAGTGCACCAAAAGGACGATT GAACGCCATCAATGGAACAGCGTACCAAACCGATGCTGCCAACTTCCCAG GGGAATTAATCGTCAGCTTCCCAGGAACTCCACAATCCAAGAAAGCTAAC TATGTACAACTCATTGATCCAAAGACAAACATTCGAAAAAAATTCTTACT GCACCACTGCTACTTATGAAGGTTTTACTCGGACTTTTATTATGTGCAGT GGCATCGCAAGCATTCTTATTCAAGAAGATCAAAACTGTGTCCGAATTGG ATGTAAACAAATATTCTGGTCGTTGGTATGAGATTTAGTCGTTAAATTGG GACCTGAAGTTAATGGTGAATACGCCTACACCATTATTACCTCCAACTAC AAAGCTTTCACATGGATCTTAGCCCGTGATGTCAAATCATTCAGAGCTAA CTACGAACAAGAAGCTCTAGAATACTTAAAGAATAATGGATACAATTGGT TCTGGAATCGACCACGAAAAGTTTTCCAAGGTGAAGAATGTATTTATCCA CCAATGTAAACCGACTTGCTGCCGACGGTAAAACCATCCTTGTCCATAAC TCTGGTCGTATCAGTGCACCAAAAGGACGATTGAACGCCATCAATGGAAC AGCGTACCAAACCGATGCTGCCAACTTCCCAGGGGAATTAATCGTCAGCT TCCCAGGAACTCCACAATCCAAGAAAGCTAACTATGTACAACTCATTGAT CCAAAGACAAACATTCGAAAAAAATTCTTACTGCACCACTGCTACTTATG AAGGTTTTACTCGGACTTTTATTATGTGCAGTGGCATCGCAAGCATTCTT ATTCAAGAAGATCAAAACTGTGTCCGAATTGGATGTAAACAAATATTCTG GTCGTTGGTATGAGATTTAGTCGTTAAATTGGGACCTGAAGTTAATGGTG AATACGCCTACACCATTATTACCTCCAACTACAAAGCTTTCACATGGATC TTAGCCCGTGATGTCAAATCATTCAGAGCTAACTACGAACAAGAAGCTCT AGAATACTTAAAGAATAATGGATACAATTGGTTCTGGAATCGACCACGAA AAGTTTTCCAAGGTGAAGAATGTATTTATCCACCAATGTAAACCGACTTG CTGCCGACGGTAAAACCATCCTTGTCCATAACTCTGGTCGTATCAGTGCA CCAAAAGGACGATTGAACGCCATCAATGGAACAGCGTACCAAACCGATGC TGCCAACTTCCCAGGGGAATTAATCGTCAGCTTCCCAGGAACTCCACAAT CCAAGAAAGCTAACTATGTACAACTCATTGATCCAAAGACAAACATTCGA AAAAAATTCTTACTGCACCACTGCTACTTATGAAGGTTTTACTCGGACTT TTATTATGTGCAGTGGCATCGCAAGCATTCTTATTCAAGAAGATCAAAAC TGTGTCCGAATTGGATGTAAACAAATATTCTGGTCGTTGGTATGAGATTT AGTCGTTAAATTGGGACCTGAAGTTAATGGTGAATACGCCTACACCATTA TTACCTCCAACTACAAAGCTTTCACATGGATCTTAGCCCGTGATGTCAAA TCATTCAGAGCTAACTACGAACAAGAAGCTCTAGAATACTTAAAGAATAA TGGATACAATTGGTTCTGGAATCGACCACGAAAAGTTTTCCAAGGTGAAG AATGTATTTATCCACCAATGTAAACCGACTTGCTGCCGACGGTAAAACCA TCCTTGTCCATAACTCTGGTCGTATCAGTGCACCAAAAGGACGATTGAAC GCCATCAATGGAACAGCGTACCAAACCGATGCTGCCAACTTCCCAGGGGA ATTAATCGTCAGCTTCCCAGGAACTCCACAATCCAAGAAAGCTAACTATG TACAACTCATTGATCCAAAGACAAACATTCGAAAAAAATTCTTACTGCAC CACTGCTACTTATGAAGGTTTTACTCGGACTTTTATTATGTGCAGTGGCA TCGCAAGCATTCTTATTCAAGAAGATCAAAACTGTGTCCGAATTGGATGT AAACAAATATTCTGGTCGTTGGTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00069646-exon-scaffold_503-1575043694:240558..240748 | TCONS_00069646-exon-scaffold_503-1575043694:240558..240748 | Clytia hemisphaerica | exon |
TCONS_00069646-exon-scaffold_503-1575043694:239976..240039 | TCONS_00069646-exon-scaffold_503-1575043694:239976..240039 | Clytia hemisphaerica | exon |
TCONS_00069646-exon-scaffold_503-1575043694:239290..239463 | TCONS_00069646-exon-scaffold_503-1575043694:239290..239463 | Clytia hemisphaerica | exon |
TCONS_00069646-exon-scaffold_503-1575043694:238498..238810 | TCONS_00069646-exon-scaffold_503-1575043694:238498..238810 | Clytia hemisphaerica | exon |
TCONS_00069646-exon-scaffold_503-1510915933:240558..240748 | TCONS_00069646-exon-scaffold_503-1510915933:240558..240748 | Clytia hemisphaerica | exon |
TCONS_00069646-exon-scaffold_503-1510915933:239976..240039 | TCONS_00069646-exon-scaffold_503-1510915933:239976..240039 | Clytia hemisphaerica | exon |
TCONS_00069646-exon-scaffold_503-1510915933:239290..239463 | TCONS_00069646-exon-scaffold_503-1510915933:239290..239463 | Clytia hemisphaerica | exon |
TCONS_00069646-exon-scaffold_503-1510915933:238498..238810 | TCONS_00069646-exon-scaffold_503-1510915933:238498..238810 | Clytia hemisphaerica | exon |
TCONS_00069646-exon-scaffold_503-1491911889:240558..240748 | TCONS_00069646-exon-scaffold_503-1491911889:240558..240748 | Clytia hemisphaerica | exon |
TCONS_00069646-exon-scaffold_503-1491911889:239976..240039 | TCONS_00069646-exon-scaffold_503-1491911889:239976..240039 | Clytia hemisphaerica | exon |
TCONS_00069646-exon-scaffold_503-1491911889:239290..239463 | TCONS_00069646-exon-scaffold_503-1491911889:239290..239463 | Clytia hemisphaerica | exon |
TCONS_00069646-exon-scaffold_503-1491911889:238498..238810 | TCONS_00069646-exon-scaffold_503-1491911889:238498..238810 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_503 | supercontig | scaffold_503:238498..240748 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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