TCONS_00069645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069645
Unique NameTCONS_00069645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069645 ID=TCONS_00069645|Name=TCONS_00069645|organism=Clytia hemisphaerica|type=transcript|length=714bp
AAGAAGACAACAACACAACAACAACATAAAGAAATTCAACTGAAGATGAA
ATacttattcttatttttcatcaTGTGTATTGGAAGAACTCAGGCTTCTA
GTTGCAGAATAAGAACTGTACGTAAATTGGATCTCGACAAATATTCGGGC
AGATGGTTTGAGATGTACAACTCGTTGATTCCAAGGTTAACATTTCAGAG
AAATTCCTTTTGCACGACAGCCACGTACACAGTCGTTGGTGATAGCATTA
GAGTTTTAAACGCTGGTCGTAGAGGAGGTCCAAGAGGCAGGATTACCAAA
TACGGCTGACGGGACTGCAACTCGTCCTAATCCAAGAAAATATCCAGGAG
AGATAATCGTGAATTTCCCAGGAGGAAGTCCACCATCCACATCGCCAAAT
TATTTGGTTGTCAAATTAGGTCCAGTCGTCAACGGTAAATATGATTATGC
TATTGTGACCACTGTCAATAAGGCTTACTTTTGGATCTTGGCACGTGATG
TGAACACTTTCAGGGTGAAGTACGAGCAAAGTTTATTGGAATACGCCAGT
TGTAATGGTTATAACACAAACTATAACCGGCCTTTAAAAAGTGTCCAGGG
AGGTGAATGTGTTTATTAAATTTAGATGTTGTAttgtatattcttttatt
tttatatacctTTTCGGAATTGAAGACACTTGTTACGTaaataataattt
aatttttaattttg
Run BLAST on NCBI

protein sequence of TCONS_00069645-protein

>TCONS_00069645-protein ID=TCONS_00069645-protein|Name=TCONS_00069645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
KKTTTQQQHKEIQLKMKYLFLFFIMCIGRTQASSCRIRTVRKLDLDKYSG
RWFEMYNSLIPRLTFQRNSFCTTATYTVVGDSIRVLNAGRRGGPRGRITK
YG
Run BLAST on NCBI

transcript from alignment at scaffold_503:235314..237152-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069645 ID=TCONS_00069645|Name=TCONS_00069645|organism=Clytia hemisphaerica|type=transcript|length=1839bp|location=Sequence derived from alignment at scaffold_503:235314..237152- (Clytia hemisphaerica)
AAGAAGACAACAACACAACAACAACATAAAGAAATTCAACTGAAGATGAA
ATACTTATTCTTATTTTTCATCATGTGTATTGGAAGAACTCAGGCTTCTA
GTTGCAGAATAAGAACTGTACGTAAATTGGATCTCGACAAATATTCGGGC
AGATGGTTTGAGGTTAGTGTCGTTTTTTTTTTTTTCGACGATATCGTGTA
TCGAATTATTTACAGGCTTCTGATTTGGCTAAGGTTTTTAACAGAATTTT
TCAGTTTCAATACATTCACTCTTCAGTTACAAGGATGCGCTAGAATACGA
GTTGATGTAGTTGGTTCAAACTGCCAGCCCTCTGTATTCTGTATTCCTTT
ACTTTTACAAATCCTGCTCAAAAAGGTAGACCTTTACGTCATTTTTTCTA
GATGTACAACTCGTTGATTCCAAGGTTAACATTTCAGAGAAATTCCTTTT
GCACGACAGCCACGTGTAAGTATTTTCCTTGTTAAACCTCAGTAATGACA
GACACGTGACCATTGTATATTTTATTCAATGTTAATTAATTAATTAATTA
AATATTCTTTATACACCAAGTGATACACACCTGTTTCACAGCTTCTAAAA
ACTGGAAAACTTGGGTAAAATTTCGTTCCTGGTGGGAAAAATACCCTACA
ATTTCAGTCCCACTGGAAAAAATTGATTTTTATTTCATCCAAAGTTTATA
TATTCAAGGGAAAAACATCGCACTCAAAAACCATCCCCACTTAGAACAAT
AGAATTATGGTCATTGCAATTTCAATAGAAATATTCATCCTTTAATATGG
GATGAAGTTTCACCGGGGCTGTAAGACAGGCGTGTGACAATGGTGGTCGT
TGTTACTCAATGATGGTTTTCTCAAAATAATTTCTTAATTTCATTGAAAA
ACTTTAGACACAGTCGTTGGTGATAGCATTAGAGTTTTAAACGCTGGTCG
TAGAGGAGGTCCAAGAGGCAGGATTACCAAATACGGCTGACGGGACTGCA
ACTCGTCCTAATCCAAGAAAATATCCAGGAGAGATAATCGTGAATTTCCC
AGGAGGAAGTCCACCATCCACATCGCCAAATTGTAAGAATTTTTCTAAGT
CAACCTACAGCAGACCAGCAACGTTGTTTCTAACATTATATAATTCTTGT
GGTCATTAGATGCCATTGTATGAACGATCTGTTTATTATAGAATCCGTCC
CAGCTGGCACACAAGGATGTTTCAACGTTTATCTAAACGACGTTCACAAC
GTCCATATAACGTTATATGAACGTTGAAACAACGTTGTGTGTCAGCTGGG
GTGTGTTAAAGGCCCGGTAGGAGCCCCTACAGATTGGGAAAATTAGCCAT
TGAAAATACCCTAAACAAAAGACGATGCTTTTATATTTCCAAGTAATTTT
AGTTTTCTAAGAATTATGATTTATATTCTAGTGCAAATTGGATTACAACA
TCACTATGTAACGTATGTAAGAAATAGAAAAAGTTCAGTAAATACTTAAT
ATTAAAAGCTCACTTTTTTTCTATAGATTTGGTTGTCAAATTAGGTCCAG
TCGTCAACGGTAAATATGATTATGCTATTGTGACCACTGTCAATAAGGCT
TACTTTTGGATCTTGGCACGTGATGTGAACACTTTCAGGGTGAAGTACGA
GCAAAGTTTATTGGAATACGCCAGTTGTAATGGTTATAACACAAACTATA
ACCGGCCTTTAAAAAGTGTCCAGGGAGGTGAATGTGTTTATTAAATTTAG
ATGTTGTATTGTATATTCTTTTATTTTTATATACCTTTTCGGAATTGAAG
ACACTTGTTACGTAAATAATAATTTAATTTTTAATTTTG

Coding sequence (CDS) from alignment at scaffold_503:235314..237152-

>TCONS_00069645 ID=TCONS_00069645|Name=TCONS_00069645|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_503:235314..237152- (Clytia hemisphaerica)
ACACAGTCGTTGGTGATAGCATTAGAGTTTTAAACGCTGGTCGTAGAGGA
GGTCCAAGAGGCAGGATTACCAAATACGGCTGAATGTACAACTCGTTGAT
TCCAAGGTTAACATTTCAGAGAAATTCCTTTTGCACGACAGCCACGTAAG
AAGACAACAACACAACAACAACATAAAGAAATTCAACTGAAGATGAAATA
CTTATTCTTATTTTTCATCATGTGTATTGGAAGAACTCAGGCTTCTAGTT
GCAGAATAAGAACTGTACGTAAATTGGATCTCGACAAATATTCGGGCAGA
TGGTTTGAGACACAGTCGTTGGTGATAGCATTAGAGTTTTAAACGCTGGT
CGTAGAGGAGGTCCAAGAGGCAGGATTACCAAATACGGCTGAATGTACAA
CTCGTTGATTCCAAGGTTAACATTTCAGAGAAATTCCTTTTGCACGACAG
CCACGTAAGAAGACAACAACACAACAACAACATAAAGAAATTCAACTGAA
GATGAAATACTTATTCTTATTTTTCATCATGTGTATTGGAAGAACTCAGG
CTTCTAGTTGCAGAATAAGAACTGTACGTAAATTGGATCTCGACAAATAT
TCGGGCAGATGGTTTGAGACACAGTCGTTGGTGATAGCATTAGAGTTTTA
AACGCTGGTCGTAGAGGAGGTCCAAGAGGCAGGATTACCAAATACGGCTG
AATGTACAACTCGTTGATTCCAAGGTTAACATTTCAGAGAAATTCCTTTT
GCACGACAGCCACGTAAGAAGACAACAACACAACAACAACATAAAGAAAT
TCAACTGAAGATGAAATACTTATTCTTATTTTTCATCATGTGTATTGGAA
GAACTCAGGCTTCTAGTTGCAGAATAAGAACTGTACGTAAATTGGATCTC
GACAAATATTCGGGCAGATGGTTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043362XLOC_043362Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069645-exon-scaffold_503-1575043694:236991..237152TCONS_00069645-exon-scaffold_503-1575043694:236991..237152Clytia hemisphaericaexon
TCONS_00069645-exon-scaffold_503-1575043694:236688..236751TCONS_00069645-exon-scaffold_503-1575043694:236688..236751Clytia hemisphaericaexon
TCONS_00069645-exon-scaffold_503-1575043694:236071..236245TCONS_00069645-exon-scaffold_503-1575043694:236071..236245Clytia hemisphaericaexon
TCONS_00069645-exon-scaffold_503-1575043694:235314..235626TCONS_00069645-exon-scaffold_503-1575043694:235314..235626Clytia hemisphaericaexon
TCONS_00069645-exon-scaffold_503-1510915933:236991..237152TCONS_00069645-exon-scaffold_503-1510915933:236991..237152Clytia hemisphaericaexon
TCONS_00069645-exon-scaffold_503-1510915933:236688..236751TCONS_00069645-exon-scaffold_503-1510915933:236688..236751Clytia hemisphaericaexon
TCONS_00069645-exon-scaffold_503-1510915933:236071..236245TCONS_00069645-exon-scaffold_503-1510915933:236071..236245Clytia hemisphaericaexon
TCONS_00069645-exon-scaffold_503-1510915933:235314..235626TCONS_00069645-exon-scaffold_503-1510915933:235314..235626Clytia hemisphaericaexon
TCONS_00069645-exon-scaffold_503-1491911889:236991..237152TCONS_00069645-exon-scaffold_503-1491911889:236991..237152Clytia hemisphaericaexon
TCONS_00069645-exon-scaffold_503-1491911889:236688..236751TCONS_00069645-exon-scaffold_503-1491911889:236688..236751Clytia hemisphaericaexon
TCONS_00069645-exon-scaffold_503-1491911889:236071..236245TCONS_00069645-exon-scaffold_503-1491911889:236071..236245Clytia hemisphaericaexon
TCONS_00069645-exon-scaffold_503-1491911889:235314..235626TCONS_00069645-exon-scaffold_503-1491911889:235314..235626Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069645-proteinTCONS_00069645-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:235314..237152 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0748649	0	0.169115	0.828811	1.24661	0	0.374305	3.59767	2.32907	0.0398919	0.299671	0	0.0540554	0	0.0781477	0.407547	0.298181	0.241652	0.366161	0.30171	0	0.192661	0	0.389877	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012674Calycin
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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