TCONS_00069624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069624
Unique NameTCONS_00069624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069624 ID=TCONS_00069624|Name=TCONS_00069624|organism=Clytia hemisphaerica|type=transcript|length=784bp
ATTCGCAAGGTTGAAGAACAGGTAACTAAAGCTATCTCTGCTGCACAAAA
ATTACCAATTCATGCATCAAAGATGTTAGATGGCTCTGCAGAGAAATCGC
TATACAACAAGCTTGTCAAAAGAGATGGTAAAAGCCATTCAGAAAAGCAA
TCTCTTCAGATGTATGGgccattcaaaaattttgatccaGAAAATTTCTT
GACACAAAAGCAGATTGTAAACTTTGTAAAGGCCAACAATAAGTATGAAT
TATACCCTCCTAATTCAGTAAAGAGTGGCAAACCAATTAATTCCTAGTCA
AATGAAATTGTGAGAGTGTGAATCAAAAAACCCCTTGCCTAGATGCAAAA
ATGATCAAACATGCATCTAAgaaagccaaaatttcaaaggAGAATGAGCA
AGCTTTGAAATACTAATTTCAACTTTGAGTCTGATCAATATTCATCGACA
ACCATAtgcttcttttcttttcattcgATTTCAATCATTTACTTTCAGAT
CAAATCTTACTGAATTCCATAAGTTGAAACATAATGGAGTGATATTTAAA
TCCCTTGGCTATAAACGATCACCAAGAAGGTCAAATGCAgctatcatttt
caaaacagATGGTATTAATCAAGCTGGATTGATACAGACCTTCCTTAAAG
TAAATCAAAATGATGGTGTATTTGTCATTGTCTCCTTGTTGAACaaatta
aaagtgatttttctgGAAGTTTGGGTGGTAGAAAGATAACTCTTGAACAC
ATTAAGTCTTACAACAGGTATTTCATAAACGGGG
Run BLAST on NCBI

transcript from alignment at scaffold_503:73339..74484+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069624 ID=TCONS_00069624|Name=TCONS_00069624|organism=Clytia hemisphaerica|type=transcript|length=1146bp|location=Sequence derived from alignment at scaffold_503:73339..74484+ (Clytia hemisphaerica)
ATTCGCAAGGTTGAAGAACAGGTATGGAATTTTCACTCAAAgtggatttt
tttaaattttgactgCATCTGACTGTCtcaattatttttcatcttttttt
aatGAATGATTGCCTGATTATTTTATCCTCAATCCCAGGTAACTAAAGCT
ATCTCTGCTGCACAAAAATTACCAATTCATGCATCAAAGATGTTAGATGG
CTCTGCAGAGAAATCGCTATACAACAAGCTTGTCAAAAGAGATGGgtgag
gaattttttttttcatatctgAAAATTTATGCTTAATTTGTGGAAATTAA
ATGCTGTAAGTTTCATTTGTAAATGTAATAACACCTTTTAAGTAGTTtaa
caaaaatatgtttttcctTTCCATTTACAGTAAAAGCCATTCAGAAAAGC
AATCTCTTCAGATGTATGGgccattcaaaaattttgatccaGAAAATTTC
TTGACACAAAAGCAGATTGTAAACTTTGTAAAGGCCAACAATAAGTATGA
ATTATACCCTCCTAATTCAGTAAAGAGTGGCAAACCAATTAATTCCTAGT
CAAATGAAATTGTGAGAGTGTGAATCAAAAAACCCCTTGCCTAGATGCAA
AAATGATCAAACATGCATCTAAgaaagccaaaatttcaaaggAGAATGAG
CAAGCTTTGAAATACTAATTTCAACTTTGAGTCTGATCAATATTCATCGA
CAACCATAtgcttcttttcttttcattcgATTTCAATCATTTACTTTCAG
ATCAAATCTTACTGAATTCCATAAGTTGAAACATAATGGAGTGATATTTA
AATCCCTTGGCTATAAACGATCACCAAGAAGGTCAAATGCAgctatcatt
ttcaaaacagATGGTATTAATCAAGCTGGATTGATACAGACCTTCCTTAA
AGTAACCAACTTTTTATAATAAGGGCAGGGATTAAAATTTACTAGATCAA
ttcttttcaaatcatttaATGTATCAAATACTTTAATGTTGTTTCTTAAT
TTTACTTTTAGGTAAATCAAAATGATGGTGTATTTGTCATTGTCTCCTTG
TTGAACaaattaaaagtgatttttctgGAAGTTTGGGTGGTAGAAAGATA
ACTCTTGAACACATTAAGTCTTACAACAGGTATTTCATAAACGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043357XLOC_043357Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069624-exon-scaffold_503-1491911889:73339..73359TCONS_00069624-exon-scaffold_503-1491911889:73339..73359Clytia hemisphaericaexon
TCONS_00069624-exon-scaffold_503-1510915933:73339..73359TCONS_00069624-exon-scaffold_503-1510915933:73339..73359Clytia hemisphaericaexon
TCONS_00069624-exon-scaffold_503-1575043694:73339..73359TCONS_00069624-exon-scaffold_503-1575043694:73339..73359Clytia hemisphaericaexon
TCONS_00069624-exon-scaffold_503-1491911889:73477..73583TCONS_00069624-exon-scaffold_503-1491911889:73477..73583Clytia hemisphaericaexon
TCONS_00069624-exon-scaffold_503-1510915933:73477..73583TCONS_00069624-exon-scaffold_503-1510915933:73477..73583Clytia hemisphaericaexon
TCONS_00069624-exon-scaffold_503-1575043694:73477..73583TCONS_00069624-exon-scaffold_503-1575043694:73477..73583Clytia hemisphaericaexon
TCONS_00069624-exon-scaffold_503-1491911889:73719..74239TCONS_00069624-exon-scaffold_503-1491911889:73719..74239Clytia hemisphaericaexon
TCONS_00069624-exon-scaffold_503-1510915933:73719..74239TCONS_00069624-exon-scaffold_503-1510915933:73719..74239Clytia hemisphaericaexon
TCONS_00069624-exon-scaffold_503-1575043694:73719..74239TCONS_00069624-exon-scaffold_503-1575043694:73719..74239Clytia hemisphaericaexon
TCONS_00069624-exon-scaffold_503-1491911889:74350..74484TCONS_00069624-exon-scaffold_503-1491911889:74350..74484Clytia hemisphaericaexon
TCONS_00069624-exon-scaffold_503-1510915933:74350..74484TCONS_00069624-exon-scaffold_503-1510915933:74350..74484Clytia hemisphaericaexon
TCONS_00069624-exon-scaffold_503-1575043694:74350..74484TCONS_00069624-exon-scaffold_503-1575043694:74350..74484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:73339..74484 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.672324	1.48115	0.156913	0.54678	1.44602	0.857026	1.17752	1.96383	1.29579	0.69572	3.2311	1.58402	4.02573	0.892073	3.25095	2.20125	1.43662	2.79897	2.7796	2.90657	2.5475	1.6863	1.6222	2.40253	4.14426	4.47941	1.74986	1.00824	0.299449	0.664617
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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