TCONS_00069623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069623
Unique NameTCONS_00069623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069623 ID=TCONS_00069623|Name=TCONS_00069623|organism=Clytia hemisphaerica|type=transcript|length=528bp
ATTCGCAAGGTTGAAGAACAGGTAACTAAAGCTATCTCTGCTGCACAAAA
ATTACCAATTCATGCATCAAAGATGTTAGATGGCTCTGCAGAGAAATCGC
TATACAACAAGCTTGTCAAAAGAGATGGTAAAAGCCATTCAGAAAAGCAA
TCTCTTCAGATGTATGGgccattcaaaaattttgatccaGAAAATTTCTT
GACACAAAAGCAGATTGTAAACTTTGTAAAGGCCAACAATAAATCAAATC
TTACTGAATTCCATAAGTTGAAACATAATGGAGTGATATTTAAATCCCTT
GGCTATAAACGATCACCAAGAAGGTCAAATGCAgctatcattttcaaaac
agATGGTATTAATCAAGCTGGATTGATACAGACCTTCCTTAAAGTAAATC
AAAATGATGGTGTATTTGTCATTGTCTCCTTGTTGAACaaattaaaagtg
atttttctgGAAGTTTGGGTGGTAGAAAGATAACTCTTGAACACATTAAG
TCTTACAACAGGTATTTCATAAACGGGG
Run BLAST on NCBI

protein sequence of TCONS_00069623-protein

>TCONS_00069623-protein ID=TCONS_00069623-protein|Name=TCONS_00069623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
IRKVEEQVTKAISAAQKLPIHASKMLDGSAEKSLYNKLVKRDGKSHSEKQ
SLQMYGPFKNFDPENFLTQKQIVNFVKANNKSNLTEFHKLKHNGVIFKSL
GYKRSPRRSNAAIIFKTDGINQAGLIQTFLKVNQNDGVFVIVSLLNKLKV
IFLEVWVVER
Run BLAST on NCBI

transcript from alignment at scaffold_503:73339..74484+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069623 ID=TCONS_00069623|Name=TCONS_00069623|organism=Clytia hemisphaerica|type=transcript|length=1146bp|location=Sequence derived from alignment at scaffold_503:73339..74484+ (Clytia hemisphaerica)
ATTCGCAAGGTTGAAGAACAGGTATGGAATTTTCACTCAAAgtggatttt
tttaaattttgactgCATCTGACTGTCtcaattatttttcatcttttttt
aatGAATGATTGCCTGATTATTTTATCCTCAATCCCAGGTAACTAAAGCT
ATCTCTGCTGCACAAAAATTACCAATTCATGCATCAAAGATGTTAGATGG
CTCTGCAGAGAAATCGCTATACAACAAGCTTGTCAAAAGAGATGGgtgag
gaattttttttttcatatctgAAAATTTATGCTTAATTTGTGGAAATTAA
ATGCTGTAAGTTTCATTTGTAAATGTAATAACACCTTTTAAGTAGTTtaa
caaaaatatgtttttcctTTCCATTTACAGTAAAAGCCATTCAGAAAAGC
AATCTCTTCAGATGTATGGgccattcaaaaattttgatccaGAAAATTTC
TTGACACAAAAGCAGATTGTAAACTTTGTAAAGGCCAACAATAAGTATGA
ATTATACCCTCCTAATTCAGTAAAGAGTGGCAAACCAATTAATTCCTAGT
CAAATGAAATTGTGAGAGTGTGAATCAAAAAACCCCTTGCCTAGATGCAA
AAATGATCAAACATGCATCTAAgaaagccaaaatttcaaaggAGAATGAG
CAAGCTTTGAAATACTAATTTCAACTTTGAGTCTGATCAATATTCATCGA
CAACCATAtgcttcttttcttttcattcgATTTCAATCATTTACTTTCAG
ATCAAATCTTACTGAATTCCATAAGTTGAAACATAATGGAGTGATATTTA
AATCCCTTGGCTATAAACGATCACCAAGAAGGTCAAATGCAgctatcatt
ttcaaaacagATGGTATTAATCAAGCTGGATTGATACAGACCTTCCTTAA
AGTAACCAACTTTTTATAATAAGGGCAGGGATTAAAATTTACTAGATCAA
ttcttttcaaatcatttaATGTATCAAATACTTTAATGTTGTTTCTTAAT
TTTACTTTTAGGTAAATCAAAATGATGGTGTATTTGTCATTGTCTCCTTG
TTGAACaaattaaaagtgatttttctgGAAGTTTGGGTGGTAGAAAGATA
ACTCTTGAACACATTAAGTCTTACAACAGGTATTTCATAAACGGGG

Coding sequence (CDS) from alignment at scaffold_503:73339..74484+

>TCONS_00069623 ID=TCONS_00069623|Name=TCONS_00069623|organism=Clytia hemisphaerica|type=CDS|length=2415bp|location=Sequence derived from alignment at scaffold_503:73339..74484+ (Clytia hemisphaerica)
ATTCGCAAGGTTGAAGAACAGGTAACTAAAGCTATCTCTGCTGCACAAAA
ATTACCAATTCATGCATCAAAGATGTTAGATGGCTCTGCAGAGAAATCGC
TATACAACAAGCTTGTCAAAAGAGATGGTAAAAGCCATTCAGAAAAGCAA
TCTCTTCAGATGTATGGgccattcaaaaattttgatccaGAAAATTTCTT
GACACAAAAGCAGATTGTAAACTTTGTAAAGGCCAACAATAAATCAAATC
TTACTGAATTCCATAAGTTGAAACATAATGGAGTGATATTTAAATCCCTT
GGCTATAAACGATCACCAAGAAGGTCAAATGCAgctatcattttcaaaac
agATGGTATTAATCAAGCTGGATTGATACAGACCTTCCTTAAAGTAAATC
AAAATGATGGTGTATTTGTCATTGTCTCCTTGTTGAACaaattaaaagtg
atttttctgGAAGTTTGGGTGGTAGAAAGATAAATTCGCAAGGTTGAAGA
ACAGGTAACTAAAGCTATCTCTGCTGCACAAAAATTACCAATTCATGCAT
CAAAGATGTTAGATGGCTCTGCAGAGAAATCGCTATACAACAAGCTTGTC
AAAAGAGATGGTAAAAGCCATTCAGAAAAGCAATCTCTTCAGATGTATGG
gccattcaaaaattttgatccaGAAAATTTCTTGACACAAAAGCAGATTG
TAAACTTTGTAAAGGCCAACAATAAATCAAATCTTACTGAATTCCATAAG
TTGAAACATAATGGAGTGATATTTAAATCCCTTGGCTATAAACGATCACC
AAGAAGGTCAAATGCAgctatcattttcaaaacagATGGTATTAATCAAG
CTGGATTGATACAGACCTTCCTTAAAGTAAATCAAAATGATGGTGTATTT
GTCATTGTCTCCTTGTTGAACaaattaaaagtgatttttctgGAAGTTTG
GGTGGTAGAAAGATAAATTCGCAAGGTTGAAGAACAGGTAACTAAAGCTA
TCTCTGCTGCACAAAAATTACCAATTCATGCATCAAAGATGTTAGATGGC
TCTGCAGAGAAATCGCTATACAACAAGCTTGTCAAAAGAGATGGTAAAAG
CCATTCAGAAAAGCAATCTCTTCAGATGTATGGgccattcaaaaattttg
atccaGAAAATTTCTTGACACAAAAGCAGATTGTAAACTTTGTAAAGGCC
AACAATAAATCAAATCTTACTGAATTCCATAAGTTGAAACATAATGGAGT
GATATTTAAATCCCTTGGCTATAAACGATCACCAAGAAGGTCAAATGCAg
ctatcattttcaaaacagATGGTATTAATCAAGCTGGATTGATACAGACC
TTCCTTAAAGTAAATCAAAATGATGGTGTATTTGTCATTGTCTCCTTGTT
GAACaaattaaaagtgatttttctgGAAGTTTGGGTGGTAGAAAGATAAA
TTCGCAAGGTTGAAGAACAGGTAACTAAAGCTATCTCTGCTGCACAAAAA
TTACCAATTCATGCATCAAAGATGTTAGATGGCTCTGCAGAGAAATCGCT
ATACAACAAGCTTGTCAAAAGAGATGGTAAAAGCCATTCAGAAAAGCAAT
CTCTTCAGATGTATGGgccattcaaaaattttgatccaGAAAATTTCTTG
ACACAAAAGCAGATTGTAAACTTTGTAAAGGCCAACAATAAATCAAATCT
TACTGAATTCCATAAGTTGAAACATAATGGAGTGATATTTAAATCCCTTG
GCTATAAACGATCACCAAGAAGGTCAAATGCAgctatcattttcaaaaca
gATGGTATTAATCAAGCTGGATTGATACAGACCTTCCTTAAAGTAAATCA
AAATGATGGTGTATTTGTCATTGTCTCCTTGTTGAACaaattaaaagtga
tttttctgGAAGTTTGGGTGGTAGAAAGATAAATTCGCAAGGTTGAAGAA
CAGGTAACTAAAGCTATCTCTGCTGCACAAAAATTACCAATTCATGCATC
AAAGATGTTAGATGGCTCTGCAGAGAAATCGCTATACAACAAGCTTGTCA
AAAGAGATGGTAAAAGCCATTCAGAAAAGCAATCTCTTCAGATGTATGGg
ccattcaaaaattttgatccaGAAAATTTCTTGACACAAAAGCAGATTGT
AAACTTTGTAAAGGCCAACAATAAATCAAATCTTACTGAATTCCATAAGT
TGAAACATAATGGAGTGATATTTAAATCCCTTGGCTATAAACGATCACCA
AGAAGGTCAAATGCAgctatcattttcaaaacagATGGTATTAATCAAGC
TGGATTGATACAGACCTTCCTTAAAGTAAATCAAAATGATGGTGTATTTG
TCATTGTCTCCTTGTTGAACaaattaaaagtgatttttctgGAAGTTTGG
GTGGTAGAAAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043357XLOC_043357Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069623-proteinTCONS_00069623-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069623-exon-scaffold_503-1491911889:73339..73359TCONS_00069623-exon-scaffold_503-1491911889:73339..73359Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1510915933:73339..73359TCONS_00069623-exon-scaffold_503-1510915933:73339..73359Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1575043694:73339..73359TCONS_00069623-exon-scaffold_503-1575043694:73339..73359Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1491911889:73477..73583TCONS_00069623-exon-scaffold_503-1491911889:73477..73583Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1510915933:73477..73583TCONS_00069623-exon-scaffold_503-1510915933:73477..73583Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1575043694:73477..73583TCONS_00069623-exon-scaffold_503-1575043694:73477..73583Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1491911889:73719..73832TCONS_00069623-exon-scaffold_503-1491911889:73719..73832Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1510915933:73719..73832TCONS_00069623-exon-scaffold_503-1510915933:73719..73832Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1575043694:73719..73832TCONS_00069623-exon-scaffold_503-1575043694:73719..73832Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1491911889:74089..74239TCONS_00069623-exon-scaffold_503-1491911889:74089..74239Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1510915933:74089..74239TCONS_00069623-exon-scaffold_503-1510915933:74089..74239Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1575043694:74089..74239TCONS_00069623-exon-scaffold_503-1575043694:74089..74239Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1491911889:74350..74484TCONS_00069623-exon-scaffold_503-1491911889:74350..74484Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1510915933:74350..74484TCONS_00069623-exon-scaffold_503-1510915933:74350..74484Clytia hemisphaericaexon
TCONS_00069623-exon-scaffold_503-1575043694:74350..74484TCONS_00069623-exon-scaffold_503-1575043694:74350..74484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:73339..74484 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17063	0	0.472706	0	26.3397	16.4697	19.4683	17.6102	11.5676	16.3635	11.3447	11.164	9.34677	10.0878	5.07418	9.81458	8.22674	6.63336	6.72694	4.62012	5.96875	3.61485	6.39358	6.08455	8.57655	13.5591	7.8139	3.92145	5.62542	3.50204
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top