TCONS_00069622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069622
Unique NameTCONS_00069622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1207

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069622 ID=TCONS_00069622|Name=TCONS_00069622|organism=Clytia hemisphaerica|type=transcript|length=1207bp
TATCCAATTAACTTACAATGGAGAACAAAAATGTTACAAAGTTCTGTTGC
TTAGCTCATTGTTTGATCTCCccgCAAAATGTCTAGTCCAAGAAACCGTT
CAGTTTAATGGATACTATGGGTGCAGTTACTGTGAAATCGAGGGAGAACC
CATAATGAAATTAAAAGGGACTAAATATGTCAAAACCTCGACAATTGTTT
TTCCTATGAAAACAATGGAAttacCATCAAAGcggacaaaagaaaaaaca
attgcACAAGCAATGGTATCATTGGAAAACAATTTAGTGGTAAACGGTAT
TCGAGGCTTGTCTGTATTGGGTAAACTTACATATTATGATATTATCTGGG
GAGTACCTTTTGATACCATGCATGGAGCTTTTCTGGGTGTAACAAAGTAT
AGTAGTTCTTTCACTCCTTTAATACAGGATGTATGTAATGTATTGTAATT
tgatgtttatttttattttggttatttgaactgagtaatatcaagttaaa
CATTTCAGATCTTAAAATATATGCAACCTAACAATTTGGCTAAAATAGAT
GGGAGAGTTTGCTTTGAAGCATAGGTATAAAGATGACTTTATCTTTGAAA
ACGTAGTTTACCTTTGAAATAAgggaatttttaaaattcaagtTAGGATG
GCCNAACCTAACAATTTGGCTAAAATAGATGGGAGAGTTTGCTTTGAAGC
ATATGTATAAAGatgactttatttttgaaaacgtaGTTTACCTTTGAAAT
AAggcaatttttaaaattcaggtTGGGATGGCATAAGGGGTTGGAGGGGT
CTTTCCCATAATGAAGCTTAAATTctcttgttttattatttttagaagAC
TTCTAGGCTTGTGGTTTGACACTGAAAACCATAAAAATGCATGGTACCTT
GGAAAGGTTTTGAAAACACTCGATTCTGTTTATCTCGCAATGACACCACC
AGATGAAGTATCTAGGCAGCCAAGAAGCATTGTAAAACATCGAAATTACT
TTAAAGcaaaCGAATTTCGTAATTGGCTATATTATTATGGACCAGTTATT
ATGCTTGGTTTTCTGCCTGAACCATTTTACAGtcattttctattCCTTGT
CAAAGGGATATATACTTTACAAAAGCTATCAATAacacaaaatgaaattg
aatctGCTGAGGAAGATTTAAAAGTATTCGTATTTCAAACAGATAAACTT
TATGGTA
Run BLAST on NCBI

transcript from alignment at scaffold_503:69989..73192+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069622 ID=TCONS_00069622|Name=TCONS_00069622|organism=Clytia hemisphaerica|type=transcript|length=3204bp|location=Sequence derived from alignment at scaffold_503:69989..73192+ (Clytia hemisphaerica)
TATCCAATTAACTTACAATGGAGAACAAAAATGTTACAAAGTTCTGTTGC
TTAGCTCATTGTTTGATCTCCccggtatgtttttttttcaattgaaataa
ataaattgataAGGTACTCTTGTAACCAAAGCATAGTGATTTGCCCTGAT
AGGAGCTCAATGTACCCAGACTTATTTATTACACTAATACTCAAGTATTT
AACGTgcacaaaaaagacaaaaggaagaaaattaaaaaagaaaattaaaa
ctagCAAGGGGTGATTTgtatttgtatttatctttaaTCAAAGTTCATTT
AAATAATATTAATCCAATCTCTTCTTATATTAAAGCAAAATGTCTAGTCC
AAGAAACCGTTCAGTTTAATGGATACTATGGGTGCAGTTACTGTGAAATC
GAGGGAGAACCCATAATGAAATTAAAAGGGACTAAATATGTCAAAACCTC
GACAATTGTTTTTCCTATGAAAACAATGGAAttacCATCAAAGcggacaa
aagaaaaaacaattgcACAAGCAATGGTATCATTGGAAAACAATTTAGTG
GTAATCATGTTTATCAAAACGTAATTTTATGAATAATCACATCAGAACGA
TATAGGTTATAGATAtttctaaaaattgttataaagcAAGATTTAAGATT
TCATGTAGTATGAAAATCTACTtgtttgtgaaaatttaatggtttaCACT
TTTaatgaaagcttttttccttttcaGGTAAACGGTATTCGAGGCTTGTC
TGTATTGGGTAAACTTACATATTATGATATTATCTGGGGAGTACCTTTTG
ATACCATGCATGGAGCTTTTCTGGGTGTAACAAAGTATAGTAGTTCTTTC
ACTCCTTTAATACAGGATGTATGTAATGTATTGTAATTtgatgtttattt
ttattttggttatttgaactgagtaatatcaagttaaaCATTTCAGATCT
TAAAATATATGCAACCTAACAATTTGGCTAAAATAGATGGGAGAGTTTGC
TTTGAAGCATAGGTATAAAGATGACTTTATCTTTGAAAACGTAGTTTACC
TTTGAAATAAgggaatttttaaaattcaagtTAGGATGGCCNAACCTAAC
AATTTGGCTAAAATAGATGGGAGAGTTTGCTTTGAAGCATATGTATAAAG
atgactttatttttgaaaacgtaGTTTACCTTTGAAATAAggcaattttt
aaaattcaggtTGGGATGGCATAAGGGGTTGGAGGGGTCTTTCCCATAAT
GAAGCTTAAATTctcttgttttattatttttagaagACTTCTAGGCTTGT
GGTTTGACACTGAAAACCATAAAAATGCATGGTACCTTGGAAAGGTTTTG
AAAACACTCGATTCTGTTTATCTCGCAATGACACCACCAGATGAAGTATC
TAGGCAGCCAAGAAGCATTGTAAAACATCGAAATTACTTTAAAGGTTATC
AATTTAATACCAGATAATTATTTTCTTTGGGGTTTAGGGGTTTTGTCGAA
TATTAATTCTTACATGTCAATTTCACCTCATTTCAACACTGAAAGGACAC
TTTAACGAGAATCCTTTTTATGTTTAATAAATTTTTATGTTTATCCTTTA
TTCAATTATACAATAAGATTATTTATAATTTGAGCTCCTCTTTGATGATT
GTACTACCCTATAACATGTGATATTTTGAAAGGTTCaaatgttgtttatt
ttttatttataaaatattaataataactagccggtacccggcgtcgcacg
ccggtttaactgtttgctgaacgcatttaaagtcctttggatgttgggaa
ggtggcataaacacgatgaaatcaaaattaaagagaagaattctcttcaa
agtttgactctatccctcctgggtgacgtatcttttaaccatattttgaa
aaagatttttgtggcaaaaatgatcagaaaacagaaaaagggcgccattc
ccaaattacaccataccggcgaccagcgacgtccgagacggctttgaaat
tagatttttttgNagtttttaccgccttttgaatttatttttaatgttgc
tgttgttctaacaaacttgtcttgtgattattatgttttattttatattt
gttcttttctttaacagattctgtttaaaagattttcttttgttttgaaa
agaattcgaatgtctcaaatcaaataaggtcgttaattacattcgaaaac
ataaaacaaaaaaaaagaaagaaaaaaaaagacaaagtcacatctatcaa
tcaaaacaaagtctttataaaacggcgcgaatctgatttaacacatttgt
ggagcaagaaacaaaagtcatcttttaaaagaacaaaacattgcttgcga
aaacgaaagtgacacacaaacaaaatgacatacagactacggctattaat
atatagattattaTAATATTAATAATAGATTTCCTTGAGCCTTACTCTTg
tgtacctaatagccggggtttggaaaaaaatctgaaaacttaATAAGTAG
GAGGTTGGAAtcaaaatgtcctgggtggagaatttttaaaaaggagacta
atacagcagaattaccttaaagaaattcaataatttaatttttgttattt
tttcaaattcagcaaaCGAATTTCGTAATTGGCTATATTATTATGGACCA
GTTATTATGCTTGGTTTTCTGCCTGAACCATTTTACAGGTATACAGTCTA
TTCAAAAGACTATGGATTTTTAAATTGACTCCTCTTCAAAACTATAATAG
TGATGTCACTATGGTTAGAAGGTTGAGGAACTTTCAAAGGTTTCTTTGTC
TTCTAAAACTTGTCTTTTGATTTAGATTTTGTGCAGCGTTCCCAAAAATA
AGCAATTTTGAACCCTTTCTTTGCGAAAAGGGGTGTAAAAATTAATGGTA
AAGGATTTAATTACAGTGACTCAAATCCAGGGGGCAGACATTCTATATGA
AAGCTAAAAAGGCCTTTGAATTGTTTGATATCCAATTACATTTTATCGGT
ACTaaataattaaattaatttACTTCATGAGAAGTTCAAGAATGGTATTT
ATTGATAATGCGTGTCTCTTCtattttagtcattttctattCCTTGTCAA
AGGGATATATACTTTACAAAAGCTATCAATAacacaaaatgaaattgaat
ctGCTGAGGAAGATTTAAAAGTATTCGTATTTCAAACAGATAAACTTTAT
GGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043356XLOC_043356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069622-exon-scaffold_503-1491911889:69989..70062TCONS_00069622-exon-scaffold_503-1491911889:69989..70062Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1510915933:69989..70062TCONS_00069622-exon-scaffold_503-1510915933:69989..70062Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1575043694:69989..70062TCONS_00069622-exon-scaffold_503-1575043694:69989..70062Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1491911889:70324..70538TCONS_00069622-exon-scaffold_503-1491911889:70324..70538Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1510915933:70324..70538TCONS_00069622-exon-scaffold_503-1510915933:70324..70538Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1575043694:70324..70538TCONS_00069622-exon-scaffold_503-1575043694:70324..70538Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1491911889:70716..71432TCONS_00069622-exon-scaffold_503-1491911889:70716..71432Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1510915933:70716..71432TCONS_00069622-exon-scaffold_503-1510915933:70716..71432Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1575043694:70716..71432TCONS_00069622-exon-scaffold_503-1575043694:70716..71432Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1491911889:72601..72676TCONS_00069622-exon-scaffold_503-1491911889:72601..72676Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1510915933:72601..72676TCONS_00069622-exon-scaffold_503-1510915933:72601..72676Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1575043694:72601..72676TCONS_00069622-exon-scaffold_503-1575043694:72601..72676Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1491911889:73068..73192TCONS_00069622-exon-scaffold_503-1491911889:73068..73192Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1510915933:73068..73192TCONS_00069622-exon-scaffold_503-1510915933:73068..73192Clytia hemisphaericaexon
TCONS_00069622-exon-scaffold_503-1575043694:73068..73192TCONS_00069622-exon-scaffold_503-1575043694:73068..73192Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:69989..73192 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.250097	0.595796	0.579713	0.157514	2.41182	2.20264	2.17053	3.47179	0.593392	2.47337	2.67356	1.1651	1.73488	1.58762	2.18946	2.10421	2.2714	2.64804	1.60519	1.09127	1.45468	1.08417	1.54914	0.551697	1.64472	3.29099	2.46114	1.21436	0.829723	0.872333
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top