TCONS_00069609 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069609
Unique NameTCONS_00069609
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069609 ID=TCONS_00069609|Name=TCONS_00069609|organism=Clytia hemisphaerica|type=transcript|length=298bp
TGGACATCCTGTTGATTCCACAAAACTGAAAACTATCGTAAAAGATGCAG
AAATCAAAGATGACGAGTTATTGGGACTTATCGATCAAGTTACAGAGGAA
TGTGATGTTTGTACCCGTTACCGAAAAGCCAGAGCCAGACCCGTCGTATC
GTTATCGCTTTCCAAAGAATTTAATGGttgccttgcaatggatttcaAGT
TCATCACAATTAACGATAAAAAGTACATTATTTTTCATATGATCGATTTG
TTTACTCGCTACTCTGCGGCGTCCGTCATCAAATCTAAACACAAGGNN
Run BLAST on NCBI

protein sequence of TCONS_00069609-protein

>TCONS_00069609-protein ID=TCONS_00069609-protein|Name=TCONS_00069609-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
GHPVDSTKLKTIVKDAEIKDDELLGLIDQVTEECDVCTRYRKARARPVVS
LSLSKEFNGCLAMDFKFITINDKKYIIFHMIDLFTRYSAASVIKSKHKX
Run BLAST on NCBI

transcript from alignment at scaffold_502:30465..30762

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069609 ID=TCONS_00069609|Name=TCONS_00069609|organism=Clytia hemisphaerica|type=transcript|length=298bp|location=Sequence derived from alignment at scaffold_502:30465..30762 (Clytia hemisphaerica)
NNCCTTGTGTTTAGATTTGATGACGGACGCCGCAGAGTAGCGAGTAAACA
AATCGATCATATGAAAAATAATGTACTTTTTATCGTTAATTGTGATGAAC
TtgaaatccattgcaaggcaaCCATTAAATTCTTTGGAAAGCGATAACGA
TACGACGGGTCTGGCTCTGGCTTTTCGGTAACGGGTACAAACATCACATT
CCTCTGTAACTTGATCGATAAGTCCCAATAACTCGTCATCTTTGATTTCT
GCATCTTTTACGATAGTTTTCAGTTTTGTGGAATCAACAGGATGTCCA

Coding sequence (CDS) from alignment at scaffold_502:30465..30762

>TCONS_00069609 ID=TCONS_00069609|Name=TCONS_00069609|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_502:30465..30762 (Clytia hemisphaerica)
NNCCTTGTGTTTAGATTTGATGACGGACGCCGCAGAGTAGCGAGTAAACA
AATCGATCATATGAAAAATAATGTACTTTTTATCGTTAATTGTGATGAAC
TtgaaatccattgcaaggcaaCCATTAAATTCTTTGGAAAGCGATAACGA
TACGACGGGTCTGGCTCTGGCTTTTCGGTAACGGGTACAAACATCACATT
CCTCTGTAACTTGATCGATAAGTCCCAATAACTCGTCATCTTTGATTTCT
GCATCTTTTACGATAGTTTTCAGTTTTGTGGAATCAACAGGATGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043345XLOC_043345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069609-exon-scaffold_502-1491911889:30465..30762TCONS_00069609-exon-scaffold_502-1491911889:30465..30762Clytia hemisphaericaexon
TCONS_00069609-exon-scaffold_502-1510915933:30465..30762TCONS_00069609-exon-scaffold_502-1510915933:30465..30762Clytia hemisphaericaexon
TCONS_00069609-exon-scaffold_502-1575043694:30465..30762TCONS_00069609-exon-scaffold_502-1575043694:30465..30762Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069609-proteinTCONS_00069609-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_502supercontigscaffold_502:30465..30762 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70469	1.94025	6.20809	5.76857	3.75647	4.03722	4.36583	4.78962	5.77917	4.51933	3.83743	2.95879	2.54778	3.17318	0.781922	0.969963	1.49364	0.812514	0	2.07037	2.79336	3.29729	1.3688	1.41186	4.27246	1.90653	0	0.582331	0.883355	0.45
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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