TCONS_00069608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069608
Unique NameTCONS_00069608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069608 ID=TCONS_00069608|Name=TCONS_00069608|organism=Clytia hemisphaerica|type=transcript|length=312bp
ACAACAGATGACATACGGTTAGCGAACAAGTATCTTCGCAAGCTTCAAAA
TTCAACTGCTCAGATCCACTTACCTAATATTGGTGATGTTACAAAGTCAA
CGTTGTATGCTTATAGTGACGCATCACACGCCAATCTTCCAGGATTTAAG
TCTCAAGGAGGTTTCATTATCCTGATCAAAGGTGAAAATGGAAACTCTGC
GCCTATTGTCTGGACTTCAAAGAAAGTAAAACGTGTTGTGAAAAGTCCAC
TTGCTGCCGAGACTCTTGCGCTACAGGAAGCAGTAGAACACGCATCATTA
ATTAAAGCACTN
Run BLAST on NCBI

protein sequence of TCONS_00069608-protein

>TCONS_00069608-protein ID=TCONS_00069608-protein|Name=TCONS_00069608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
TTDDIRLANKYLRKLQNSTAQIHLPNIGDVTKSTLYAYSDASHANLPGFK
SQGGFIILIKGENGNSAPIVWTSKKVKRVVKSPLAAETLALQEAVEHASL
IKAX
Run BLAST on NCBI

transcript from alignment at scaffold_502:28996..29307

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069608 ID=TCONS_00069608|Name=TCONS_00069608|organism=Clytia hemisphaerica|type=transcript|length=312bp|location=Sequence derived from alignment at scaffold_502:28996..29307 (Clytia hemisphaerica)
NAGTGCTTTAATTAATGATGCGTGTTCTACTGCTTCCTGTAGCGCAAGAG
TCTCGGCAGCAAGTGGACTTTTCACAACACGTTTTACTTTCTTTGAAGTC
CAGACAATAGGCGCAGAGTTTCCATTTTCACCTTTGATCAGGATAATGAA
ACCTCCTTGAGACTTAAATCCTGGAAGATTGGCGTGTGATGCGTCACTAT
AAGCATACAACGTTGACTTTGTAACATCACCAATATTAGGTAAGTGGATC
TGAGCAGTTGAATTTTGAAGCTTGCGAAGATACTTGTTCGCTAACCGTAT
GTCATCTGTTGT

Coding sequence (CDS) from alignment at scaffold_502:28996..29307

>TCONS_00069608 ID=TCONS_00069608|Name=TCONS_00069608|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_502:28996..29307 (Clytia hemisphaerica)
NAGTGCTTTAATTAATGATGCGTGTTCTACTGCTTCCTGTAGCGCAAGAG
TCTCGGCAGCAAGTGGACTTTTCACAACACGTTTTACTTTCTTTGAAGTC
CAGACAATAGGCGCAGAGTTTCCATTTTCACCTTTGATCAGGATAATGAA
ACCTCCTTGAGACTTAAATCCTGGAAGATTGGCGTGTGATGCGTCACTAT
AAGCATACAACGTTGACTTTGTAACATCACCAATATTAGGTAAGTGGATC
TGAGCAGTTGAATTTTGAAGCTTGCGAAGATACTTGTTCGCTAACCGTAT
GTCATCTGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043344XLOC_043344Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069608-exon-scaffold_502-1491911889:28996..29307TCONS_00069608-exon-scaffold_502-1491911889:28996..29307Clytia hemisphaericaexon
TCONS_00069608-exon-scaffold_502-1510915933:28996..29307TCONS_00069608-exon-scaffold_502-1510915933:28996..29307Clytia hemisphaericaexon
TCONS_00069608-exon-scaffold_502-1575043694:28996..29307TCONS_00069608-exon-scaffold_502-1575043694:28996..29307Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069608-proteinTCONS_00069608-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_502supercontigscaffold_502:28996..29307 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.85524	3.17716	4.33823	4.02661	2.22424	3.78954	1.13647	4.83287	3.99521	7.25136	7.07909	6.35071	3.92036	2.13643	2.19351	1.88841	2.47932	2.79893	2.63665	3.11154	0.825603	1.94861	0.789598	0.35893	0.440612	1.90198	1.41642	1.00776	0	0.389377
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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