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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069570 ID=TCONS_00069570|Name=TCONS_00069570|organism=Clytia hemisphaerica|type=transcript|length=2991bpRun BLAST on NCBI transcript from alignment at scaffold_502:119551..132210+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069570 ID=TCONS_00069570|Name=TCONS_00069570|organism=Clytia hemisphaerica|type=transcript|length=12660bp|location=Sequence derived from alignment at scaffold_502:119551..132210+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00069570 vs. Swiss-Prot (Human)
Match: ROCK2 (Rho-associated protein kinase 2 OS=Homo sapiens GN=ROCK2 PE=1 SV=4) HSP 1 Score: 386.726 bits (992), Expect = 1.746e-114 Identity = 295/790 (37.34%), Postives = 471/790 (59.62%), Query Frame = 3
Query: 9 LRAETDANIRLKKAESDLMKAQAIAEHSIKELSEKNRLLANAKANVENELLKAQVSLEAEIHSVKHAKDIRREYEKQNQGLKDEVDQLRSKYKTDATALQKLQDELFTLEKSKANTE----FELKQLQGRFESDKKTYQSQXXXXXXXXXXXXXSEIQILDRESADVQREREARI----TAESKAANL----ERQVNVLQLEIKNLNQKLTRSEQDYQASQSKVDSLKKSLDEESLKRAEIQSELNTTSNSLTVLRSQEKQLKSDYNRIQEEKKQLQENLFKLKSDTEVDDIQMKELQDQLEAEQYFSTLYKTQVRELKEEVDERAKQSQALQGDLQLLQEDRDLMSRQXXXXXXXXXXXXXXRSIVEEQFSDLEKERTMLELEVKDINARLQAEVSDKNKVYTQGEDRVKTLETTIRNKEDEIKLLEERIDQLKLDVDSAKNEKSNDTDAVESLRRQLATEKQLKTQAVNKLAEIIQRKDIXXXXXXXXXXXXXXXXXXRENKKLIMELREEKNKYQQFATKYQTQKYDYETQIXXXXXXXXXXXXXXXXXXXXIEQLGEQIN--NLKKDNETIRALVPDVDRQVSQQASFKMESWLSVPETAGGKKKRRFEWKKQLVVVSSRKIFFYNTEKAKNEATPSMILDINKLYHVRSVAQGELIRVESKDIPKIFQILYSMEGXXXXXXXXXXXXXXXXXGVVSISFKSHQFFVMTYHTPTQCDLCPKQMWNFVKPPPALQCRRCHVKMHKEHVDREEDIV-ECKA--DSATAKELLLMANNVDEQKQWVMNL 2327
LR E+D RL+K +++ K E + ++L +KN LL AK +E E + Q +LE+E H +I + + + GL++++ + ++LQ+ LEK K+N E ++LK +Q E ++ +++ A+L + K + ++ ++ +E E ++ T + K NL E++ ++L ++K QK+ + V +L +++E+ KR Q++L + + L+ EKQLK + N + E K L++ +L+ + + D QMKELQDQLEAEQYFSTLYKTQVRELKEE +E+ K + LQ Q LQ++RD ++ QLE+ L KA+SE+LARSI EEQ+SDLEKE+ M ELE+K++ AR + E+++K+ E+ +TL + + N +E + L ++ ++ + K+E+ + +QL TE+ LKTQAVNKLAEI+ RK+ +G+ T+V++KE+EN+KL MEL+ E+ K Q KYQ + + + QI+E + +++M DSKD IEQL Q+ ++ D+ +I + D + S ++E WLS+P KK F W K+ V+VSS+KI FY++E+ K ++ P M+LDI+KL+HVR V Q ++ R ++K+IP+IFQILY+ EGESK +E + ++ I K H+F YH PT C+ C K +W+ KPPPAL+CRRCH+K HK+H+D++E+I+ CK D +TAK LLL+AN+ +EQ++WV L
Sbjct: 571 LRTESDTAARLRKTQAESSKQIQQLESNNRDLQDKNCLLETAKLKLEKEFINLQSALESERRDRTHGSEIINDLQGRICGLEEDLKNGKILLAKVELEKRQLQERFTDLEKEKSNMEIDMTYQLKVIQQSLEQEEAEHKATKARLADKNKI-----YESIEEAKSEAMKEMEKKLLEERTLKQKVENLLLEAEKRCSLLDCDLKQSQQKINELLKQKDVLNEDVRNLTLKIEQETQKRCLTQNDLKMQTQQVNTLKMSEKQLKQENNHLMEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVRELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEKEKIMKELEIKEMMARHKQELTEKDATIASLEETNRTLTSDVANLANEKEELNNKLKDVQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKE-----PVKRGNDTDVRRKEKENRKLHMELKSEREKLTQQMIKYQKELNEMQAQIAEESQIRIELQMTLDSKDSDIEQLRSQLQALHIGLDSSSIGSGPGDAEADDGFPES-RLEGWLSLPVRNNTKK---FGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQILYANEGESKKEQEFPVEPVGEKSNY--ICHKGHEFIPTLYHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKVYYDISTAKNLLLLANSTEEQQKWVSRL 1344 The following BLAST results are available for this feature:
BLAST of TCONS_00069570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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