TCONS_00069525 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069525
Unique Name	TCONS_00069525
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1692

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_502:93875..95566+

transcript sequence

>TCONS_00069525 ID=TCONS_00069525|Name=TCONS_00069525|organism=Clytia hemisphaerica|type=transcript|length=1692bp
cagGACTGGAGACCACCATTTTTGCATTCTACACCCTCGAAAACATGAAA
TATagtgaaattgttaaaaatgatGTAACCATGGGATGGGCTCGAACTCA
GCAAAATTGCATTGATTTTAAGGTTTGATGTTGTAAGTAAACTGAGTTAT
AATTGAAttctttcttattctttttaGAATTAAATGGTGACGAAGAATCT
CTCGCTGTTGATGACTTGAACTCTAGTAAGAATTTGCATTATATCCACAG
CTTATCAATAAGGTATTAATTATAACGAGCACTTGTCCTGTAACTCATCA
ATTGAGCTCATTGTATCGAATTCGGGATACAAAGTAACCTTGTTTTGTAA
CCCTAATCCATCTTCATTCAAGCTGGTTAAACTTTCATTCCTTTCTATAC
TGGAAATGATGTTAGCAAAGACTTGAATTCATGTTTTAGGTAATGTTTCT
GAGGTTTTAAATTCAACTCAATTAACGGAGGTGTTTGCAGATTCTATTGA
AGGTAAGAATTTCCATCAGAATTGTTTTACAAACATGACAGCCATAATCT
AAGGTTTGTGACTGTGTGTCTATAAATCTTTTACATCCTTTTAAATCCAT
AATTCtcttatatttctttattcagTGAAAAGGCTTCCCATCCACATTCT
AAAACGTTACGCGAGTCATGTGGCCAAGGTCGAGCCAGATCGGATCAGGT
CGTATGCCCAGGAGATTAAGCAAGAAATCCTATTACTGGCAAGGGGGAAA
CTACCATCGTTTCGATTCGACATATTTACCAGAAACCCAATTGCTCAACA
TTTTCGACCTGCCGTAAGTATGTATGTCAGGAAATACCCCCCAAAATCCC
TTCAAACCACATAGAAACTACCAATAAAGGTTCCCTATCTCATATTATGA
TATTTAGTTGCTAAAACCAAGAAAAAACCAGACATGATTTTTCAGTCCAA
AAACCCATCAAACATCTACTGTCCACCATTAAAAACATGtcttgtttaca
tttgaaaaatgCACCGACATTGAGCTCAGATATCTCGAGATGTATAAAAG
CAGGACCcgtgaaattttgaatgaatgaaccTCGACCCCCACTCTGTCTG
CTACATTTTACagaatagaaaaatttcaagtggtctttattttattaaac
tttgaagTAACCCAAGTCTAAgaacgtacgtggtacgtcgtTCGGCCTGT
ATATGCGACGTACACTGTACATCGTTCGACTTCTAAAGGTTAAGACTCTT
GATCGTAAAGACTGACCCTAACATTTTAATAacgaaacatttttttgttt
aatagaTGAATCCTGATGGATCAATTTAccgtaaaattattttgagccaC
GAACTACAGCAATATTCTCTAGATGGTGagttttctttttatctttccta
acttttcagacttttctaGAAACTGAATTATGATTCGGGATATGGTACAG
TCTACCAAAATTGACTTTTCTTTGCATCTGTTTCAACGGGGCAGACTCTT
TCTAATCTGAATTAAAATGGTACAGTCtacgaaaattttaaaactcaCAT
AGACGATTGaagtttcttataagaaaattgTCGCTTTTAGGGCTTCCAAA
TCCTTGGGTATTCGTTATACCGAGTTGATGCTAATCGTTATAGCTGAATt
attcaattactcaaattcgATTTTGCTTAGGTGGGATCCCAG

Run BLAST on NCBI

transcript from alignment at scaffold_502:93875..95566+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069525 ID=TCONS_00069525|Name=TCONS_00069525|organism=Clytia hemisphaerica|type=transcript|length=1692bp|location=Sequence derived from alignment at scaffold_502:93875..95566+ (Clytia hemisphaerica)
cagGACTGGAGACCACCATTTTTGCATTCTACACCCTCGAAAACATGAAA
TATagtgaaattgttaaaaatgatGTAACCATGGGATGGGCTCGAACTCA
GCAAAATTGCATTGATTTTAAGGTTTGATGTTGTAAGTAAACTGAGTTAT
AATTGAAttctttcttattctttttaGAATTAAATGGTGACGAAGAATCT
CTCGCTGTTGATGACTTGAACTCTAGTAAGAATTTGCATTATATCCACAG
CTTATCAATAAGGTATTAATTATAACGAGCACTTGTCCTGTAACTCATCA
ATTGAGCTCATTGTATCGAATTCGGGATACAAAGTAACCTTGTTTTGTAA
CCCTAATCCATCTTCATTCAAGCTGGTTAAACTTTCATTCCTTTCTATAC
TGGAAATGATGTTAGCAAAGACTTGAATTCATGTTTTAGGTAATGTTTCT
GAGGTTTTAAATTCAACTCAATTAACGGAGGTGTTTGCAGATTCTATTGA
AGGTAAGAATTTCCATCAGAATTGTTTTACAAACATGACAGCCATAATCT
AAGGTTTGTGACTGTGTGTCTATAAATCTTTTACATCCTTTTAAATCCAT
AATTCtcttatatttctttattcagTGAAAAGGCTTCCCATCCACATTCT
AAAACGTTACGCGAGTCATGTGGCCAAGGTCGAGCCAGATCGGATCAGGT
CGTATGCCCAGGAGATTAAGCAAGAAATCCTATTACTGGCAAGGGGGAAA
CTACCATCGTTTCGATTCGACATATTTACCAGAAACCCAATTGCTCAACA
TTTTCGACCTGCCGTAAGTATGTATGTCAGGAAATACCCCCCAAAATCCC
TTCAAACCACATAGAAACTACCAATAAAGGTTCCCTATCTCATATTATGA
TATTTAGTTGCTAAAACCAAGAAAAAACCAGACATGATTTTTCAGTCCAA
AAACCCATCAAACATCTACTGTCCACCATTAAAAACATGtcttgtttaca
tttgaaaaatgCACCGACATTGAGCTCAGATATCTCGAGATGTATAAAAG
CAGGACCcgtgaaattttgaatgaatgaaccTCGACCCCCACTCTGTCTG
CTACATTTTACagaatagaaaaatttcaagtggtctttattttattaaac
tttgaagTAACCCAAGTCTAAgaacgtacgtggtacgtcgtTCGGCCTGT
ATATGCGACGTACACTGTACATCGTTCGACTTCTAAAGGTTAAGACTCTT
GATCGTAAAGACTGACCCTAACATTTTAATAacgaaacatttttttgttt
aatagaTGAATCCTGATGGATCAATTTAccgtaaaattattttgagccaC
GAACTACAGCAATATTCTCTAGATGGTGagttttctttttatctttccta
acttttcagacttttctaGAAACTGAATTATGATTCGGGATATGGTACAG
TCTACCAAAATTGACTTTTCTTTGCATCTGTTTCAACGGGGCAGACTCTT
TCTAATCTGAATTAAAATGGTACAGTCtacgaaaattttaaaactcaCAT
AGACGATTGaagtttcttataagaaaattgTCGCTTTTAGGGCTTCCAAA
TCCTTGGGTATTCGTTATACCGAGTTGATGCTAATCGTTATAGCTGAATt
attcaattactcaaattcgATTTTGCTTAGGTGGGATCCCAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043336	XLOC_043336	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00069525-exon-scaffold_502-1491911889:93875..95566	TCONS_00069525-exon-scaffold_502-1491911889:93875..95566	Clytia hemisphaerica	exon
TCONS_00069525-exon-scaffold_502-1510915933:93875..95566	TCONS_00069525-exon-scaffold_502-1510915933:93875..95566	Clytia hemisphaerica	exon
TCONS_00069525-exon-scaffold_502-1575043694:93875..95566	TCONS_00069525-exon-scaffold_502-1575043694:93875..95566	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_502	supercontig	scaffold_502:93875..95566 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0478459	0.0699859	0.103284	0.132501	0.129046	0.0597263	0.0307567	0.0337296	0	0.0749121	0.170349	0	0.0477312	0	0	0.0170767	0.0538766	0	0	0	0.0693902	0.0338461	0	0	0.0902628	0.0957749	0.131212	0.0700167	0.0265526	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00069525 vs. Swiss-Prot (Human)

BLAST of TCONS_00069525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00069525 (transcript) - C. hemisphaerica