TCONS_00069510 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069510
Unique NameTCONS_00069510
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069510 ID=TCONS_00069510|Name=TCONS_00069510|organism=Clytia hemisphaerica|type=transcript|length=414bp
gcaaaatggcGTCCGCAAGTGATGAATTAATGAGcgattttgatttaaat
tttgatgCTGAGCTGCCAGAGGAACTTGTGtcgattgaaaatttggtaTT
AGATGAAGATGTAGAAATTGATGAAGATGAGGAAATACATTTTGATGTGG
AGCCAATAATAGTTGGTGAAGATATTATCCAGGAGGCAGATGAACTTGAA
ATGGACATTGAGTCAGAATCTGCCAACTCTGAAATTTGTATAGTTTTTAC
AAGCGACACAGATGTGGCAATCGTCAAACCCTATACTGAAATAGTTGAAC
ACaaacaagaaacaaagaaaaaacctAATTTATATTGTAAACATTGTGGC
AAGCAGTATGTTATTAAGAAGTACTTGATAGATCACGAAGAATCATGTGG
TGAGTAGCTTTACC
Run BLAST on NCBI

protein sequence of TCONS_00069510-protein

>TCONS_00069510-protein ID=TCONS_00069510-protein|Name=TCONS_00069510-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
KMASASDELMSDFDLNFDAELPEELVSIENLVLDEDVEIDEDEEIHFDVE
PIIVGEDIIQEADELEMDIESESANSEICIVFTSDTDVAIVKPYTEIVEH
KQETKKKPNLYCKHCGKQYVIKKYLIDHEESCGE
Run BLAST on NCBI

transcript from alignment at scaffold_501:75050..75463

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069510 ID=TCONS_00069510|Name=TCONS_00069510|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at scaffold_501:75050..75463 (Clytia hemisphaerica)
GGTAAAGCTACTCACCACATGATTCTTCGTGATCTATCAAGTACTTCTTA
ATAACATACTGCTTGCCACAATGTTTACAATATAAATTaggttttttctt
tgtttcttgtttGTGTTCAACTATTTCAGTATAGGGTTTGACGATTGCCA
CATCTGTGTCGCTTGTAAAAACTATACAAATTTCAGAGTTGGCAGATTCT
GACTCAATGTCCATTTCAAGTTCATCTGCCTCCTGGATAATATCTTCACC
AACTATTATTGGCTCCACATCAAAATGTATTTCCTCATCTTCATCAATTT
CTACATCTTCATCTAAtaccaaattttcaatcgaCACAAGTTCCTCTGGC
AGCTCAGcatcaaaatttaaatcaaaatcgCTCATTAATTCATCACTTGC
GGACgccattttgc

Coding sequence (CDS) from alignment at scaffold_501:75050..75463

>TCONS_00069510 ID=TCONS_00069510|Name=TCONS_00069510|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_501:75050..75463 (Clytia hemisphaerica)
CTACTCACCACATGATTCTTCGTGATCTATCAAGTACTTCTTAATAACAT
ACTGCTTGCCACAATGTTTACAATATAAATTaggttttttctttgtttct
tgtttGTGTTCAACTATTTCAGTATAGGGTTTGACGATTGCCACATCTGT
GTCGCTTGTAAAAACTATACAAATTTCAGAGTTGGCAGATTCTGACTCAA
TGTCCATTTCAAGTTCATCTGCCTCCTGGATAATATCTTCACCAACTATT
ATTGGCTCCACATCAAAATGTATTTCCTCATCTTCATCAATTTCTACATC
TTCATCTAAtaccaaattttcaatcgaCACAAGTTCCTCTGGCAGCTCAG
catcaaaatttaaatcaaaatcgCTCATTAATTCATCACTTGCGGACgcc
atttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043328XLOC_043328Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069510-proteinTCONS_00069510-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069510-exon-scaffold_501-1491911889:75050..75463TCONS_00069510-exon-scaffold_501-1491911889:75050..75463Clytia hemisphaericaexon
TCONS_00069510-exon-scaffold_501-1510915933:75050..75463TCONS_00069510-exon-scaffold_501-1510915933:75050..75463Clytia hemisphaericaexon
TCONS_00069510-exon-scaffold_501-1575043694:75050..75463TCONS_00069510-exon-scaffold_501-1575043694:75050..75463Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_501supercontigscaffold_501:75050..75463 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.519186	0.843814	0.58785	0.191706	13.7697	9.77443	10.6799	9.99843	5.68761	9.93529	3.5067	5.41715	7.59648	3.58592	1.96541	1.89827	0.649586	1.46477	1.47175	2.88765	2.00792	1.46909	0.595289	1.80401	5.01685	5.63823	5.69526	2.53256	4.99422	7.04537
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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