TCONS_00069505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069505
Unique NameTCONS_00069505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069505 ID=TCONS_00069505|Name=TCONS_00069505|organism=Clytia hemisphaerica|type=transcript|length=431bp
TACTGATCGCTTCCTCCGCGCCATGATGCAACTTCGCAACACCCCTGATC
GTGATTGTGAGTTATCTCCAGCCCAAATCGTATTCGGAAGACCTATCAGA
GATGCATTTGCCTTCGCCAGTCGCCTGGACAAGTTTACCAACCCTAATGT
CCGACCCTTGTGGCGAGACGCATGGGCCAAGAAAGAAGAGGCACTTCGGG
AATGCTTCCACCACTCCGCAGAGAAGAGGAACGAGCATGCACACGCACTA
CCGAATTTGACTCCTGGACACCGCTGCTATATTCAAAACCAAAGCGGTAA
CCATCCAAAACGTTGGGATCGATCAGGAACTGTTGTTGAGACACATGGCA
ATGACAGTTACTCTTTGAAGGTGGATGGTACCGGAAGAGTGACACGCCGT
AACAGACGCCATCTACGGCAATTTCTTCCAG
Run BLAST on NCBI

protein sequence of TCONS_00069505-protein

>TCONS_00069505-protein ID=TCONS_00069505-protein|Name=TCONS_00069505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
TDRFLRAMMQLRNTPDRDCELSPAQIVFGRPIRDAFAFASRLDKFTNPNV
RPLWRDAWAKKEEALRECFHHSAEKRNEHAHALPNLTPGHRCYIQNQSGN
HPKRWDRSGTVVETHGNDSYSLKVDGTGRVTRRNRRHLRQFLP
Run BLAST on NCBI

transcript from alignment at scaffold_501:20773..21203

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069505 ID=TCONS_00069505|Name=TCONS_00069505|organism=Clytia hemisphaerica|type=transcript|length=431bp|location=Sequence derived from alignment at scaffold_501:20773..21203 (Clytia hemisphaerica)
CTGGAAGAAATTGCCGTAGATGGCGTCTGTTACGGCGTGTCACTCTTCCG
GTACCATCCACCTTCAAAGAGTAACTGTCATTGCCATGTGTCTCAACAAC
AGTTCCTGATCGATCCCAACGTTTTGGATGGTTACCGCTTTGGTTTTGAA
TATAGCAGCGGTGTCCAGGAGTCAAATTCGGTAGTGCGTGTGCATGCTCG
TTCCTCTTCTCTGCGGAGTGGTGGAAGCATTCCCGAAGTGCCTCTTCTTT
CTTGGCCCATGCGTCTCGCCACAAGGGTCGGACATTAGGGTTGGTAAACT
TGTCCAGGCGACTGGCGAAGGCAAATGCATCTCTGATAGGTCTTCCGAAT
ACGATTTGGGCTGGAGATAACTCACAATCACGATCAGGGGTGTTGCGAAG
TTGCATCATGGCGCGGAGGAAGCGATCAGTA

Coding sequence (CDS) from alignment at scaffold_501:20773..21203

>TCONS_00069505 ID=TCONS_00069505|Name=TCONS_00069505|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_501:20773..21203 (Clytia hemisphaerica)
TGGAAGAAATTGCCGTAGATGGCGTCTGTTACGGCGTGTCACTCTTCCGG
TACCATCCACCTTCAAAGAGTAACTGTCATTGCCATGTGTCTCAACAACA
GTTCCTGATCGATCCCAACGTTTTGGATGGTTACCGCTTTGGTTTTGAAT
ATAGCAGCGGTGTCCAGGAGTCAAATTCGGTAGTGCGTGTGCATGCTCGT
TCCTCTTCTCTGCGGAGTGGTGGAAGCATTCCCGAAGTGCCTCTTCTTTC
TTGGCCCATGCGTCTCGCCACAAGGGTCGGACATTAGGGTTGGTAAACTT
GTCCAGGCGACTGGCGAAGGCAAATGCATCTCTGATAGGTCTTCCGAATA
CGATTTGGGCTGGAGATAACTCACAATCACGATCAGGGGTGTTGCGAAGT
TGCATCATGGCGCGGAGGAAGCGATCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043323XLOC_043323Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069505-proteinTCONS_00069505-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069505-exon-scaffold_501-1491911889:20773..21203TCONS_00069505-exon-scaffold_501-1491911889:20773..21203Clytia hemisphaericaexon
TCONS_00069505-exon-scaffold_501-1510915933:20773..21203TCONS_00069505-exon-scaffold_501-1510915933:20773..21203Clytia hemisphaericaexon
TCONS_00069505-exon-scaffold_501-1575043694:20773..21203TCONS_00069505-exon-scaffold_501-1575043694:20773..21203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_501supercontigscaffold_501:20773..21203 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15981	0.311679	0.180945	0	0.215512	0.340601	0	0.961748	0.748995	0.667235	0.323817	0.140648	0.58797	0.412911	0.709129	0.479597	0.844067	0.847362	0.440371	0.711074	0.679358	0.551449	0.366469	0.704027	0.514742	0.448935	0.751352	0.467725	0.532129	0.221891
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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