TCONS_00069503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069503
Unique NameTCONS_00069503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069503 ID=TCONS_00069503|Name=TCONS_00069503|organism=Clytia hemisphaerica|type=transcript|length=509bp
TAGAATTATTATTTAGTCGCCTGTGCAAGGTTCACACAGGATTTACACAT
AGAATTATTTTTTAGTCGCATGTGCAAGGTTCACACAGGATTATAGATAG
CAAGTAGAGAGTTAATAGATCAGCCAGTGCAACTTTGAAACGACACGCAG
tttgaaatttatcttttttttggtTCGATTCTTTCTGGGTAAACTAATCC
TATTTGACATTAATTTCAGGTCTCAGGAGAAGGGTTTAGACTTTCATTAT
CATTCAGAATTACCTTTTACCATTATAATCATTAGGGTTAGGATATTATT
TGGCTTAACATGATAGAGTGTTATCTATTTCAAAACCATTCCAATGGAAT
ATAAAGtatgattaaattaaattttgtgtctttttcagtaaattgaaatt
ttaaagaattatcaaaaatagtatGAATGGTTGGTTCAAATAACAACAAT
GGTTCAAATGGTGATAATGGTCTATACAGAAAAGAAAATATGGTGCGTGA
AATGATTNN
Run BLAST on NCBI

transcript from alignment at scaffold_501:59543..60213-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069503 ID=TCONS_00069503|Name=TCONS_00069503|organism=Clytia hemisphaerica|type=transcript|length=671bp|location=Sequence derived from alignment at scaffold_501:59543..60213- (Clytia hemisphaerica)
TAGAATTATTATTTAGTCGCCTGTGCAAGGTTCACACAGGATTTACACAT
AGAATTATTTTTTAGTCGCATGTGCAAGGTTCACACAGGATTTACACATA
GAATTATTTTTTTTAGTCGCCTGTGCAAGGTTCACACAGGATTATAGATA
GCAAGTAGAGAGTTAATAGATCAGCCAGTGCAACTTTGAAACGACACGCA
GTTTGAAATTTATCTTTTTTTTGGTTCGATTCTTTCTGGGTAAACTAATC
CTATTTGACATTAATTTCAGGTCTCAGGAGAAGGGTTTAGACTTTCATTA
TCATTCAGAATTACCTTTTACCATTATAATCATTAGGGTTAGGATATTAT
TTGGCTTAACATGATAGAGTGTTATCTATTTCAAAACCATTCCAATGGAA
TATAAAGTATGATTAAATTAAATTTTGTGTCTTTTTCAGTAAATTGAAAT
TTTAAAGAATTATCAAAAATAGTATGAATGGTTGGTTCAAATAACAACAA
TGGTTCAAATGGTGATAATGGTCTATACAGAAAAGGTATGTAAAGGTTTT
CTTCCATTTGATAACCATTATCCTTTATATGATTCTTTTTAGTGACTTTC
CAAAATAATGTTGCTTTCTTATGACTTACCTGCTCATTTATTATAGAAAA
TATGGTGCGTGAAATGATTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043321XLOC_043321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069503-exon-scaffold_501-1575043694:60136..60213TCONS_00069503-exon-scaffold_501-1575043694:60136..60213Clytia hemisphaericaexon
TCONS_00069503-exon-scaffold_501-1575043694:59679..60084TCONS_00069503-exon-scaffold_501-1575043694:59679..60084Clytia hemisphaericaexon
TCONS_00069503-exon-scaffold_501-1575043694:59543..59567TCONS_00069503-exon-scaffold_501-1575043694:59543..59567Clytia hemisphaericaexon
TCONS_00069503-exon-scaffold_501-1510915933:60136..60213TCONS_00069503-exon-scaffold_501-1510915933:60136..60213Clytia hemisphaericaexon
TCONS_00069503-exon-scaffold_501-1510915933:59679..60084TCONS_00069503-exon-scaffold_501-1510915933:59679..60084Clytia hemisphaericaexon
TCONS_00069503-exon-scaffold_501-1510915933:59543..59567TCONS_00069503-exon-scaffold_501-1510915933:59543..59567Clytia hemisphaericaexon
TCONS_00069503-exon-scaffold_501-1491911889:60136..60213TCONS_00069503-exon-scaffold_501-1491911889:60136..60213Clytia hemisphaericaexon
TCONS_00069503-exon-scaffold_501-1491911889:59679..60084TCONS_00069503-exon-scaffold_501-1491911889:59679..60084Clytia hemisphaericaexon
TCONS_00069503-exon-scaffold_501-1491911889:59543..59567TCONS_00069503-exon-scaffold_501-1491911889:59543..59567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_501supercontigscaffold_501:59543..60213 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30085	0.461285	0.669495	0.916995	0.797395	0.126022	0.760204	0.854032	0.298964	0.493754	0.599062	0.31504	1.49436	1.87862	1.47733	1.36921	1.1541	2.18384	2.13711	0.789292	1.82943	0.836563	2.1695	2.95858	0	0.113317	2.27019	1.73058	0.656292	1.60478
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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