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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069489 ID=TCONS_00069489|Name=TCONS_00069489|organism=Clytia hemisphaerica|type=transcript|length=1587bp
TTCAAATTAATGAATTTTTAAACATCAAAAATGGTATTGGCGTAGCATTG
TCATACTTCCTGTCAAGTGACTTTATGTGTTTACAATGTTGTTTACAATA
CGTGAATCGGAGTTTTGGTTTCGTTTTAAGAAGCTTGATCGTAGGATCAC
TTGTCGAAGTCTTTCCGCAATAGTATACTAACTCATAATAAAGCATTTTT
TGCTACAGAATAAGATAGTTTGAGGTTATTTCTGCCTCTATGGCCCTAAC
AAAACCTAAAAGATCTTTTCACTGAAATACATATATGATCCGAAGACGTG
AACTGGACTAACATGTCAATCTAATATAGAAAACAAATCTTTCCGAACCT
TCAAAAACTGAATTTTAGTTTGCGTTCACTGTGATGGAGACTTTCTTTCA
ACCAGAACAAGGGCCTACACTGCCAACACTTGATCAGCATGCAAAGGAAA
TACATCAAGATAATTCGTAAATTGAAGCATGTTGAAAAGATTTCAGGAGA
GTTTGAGCCAGTATTTCAGAACCAATAGTTTTTTCATGACTGAGCAAAGA
GCAAGAACAAAAGAAAGCTGTTCAAAATGGATTGTTAATGGAACATCTGC
CAAGGACATATCTGTCCAAACCAAAGCGAGATTAACTTTAACTTAACATC
TGATTGGACCTTTTCAACGGTGAACTCATGTCAATCCGTAGTAGTAAAGG
GGAAAGCTATAGGATGAGTGACATCTTTTTGCCAATACAATCATAATAAT
TTACCAAAGTTTTTGAAtgtatttgaaattatttttgcaaGTGAATCAGC
TGCTAAGGCCTAGCAATAATGGAAGGCAAAATGTATTAAAAGTGGGTTAA
AAATTGTATTCAAAGGAAGCGATTGGTAGCCAGACAGTGAATAatattct
gagcaaaaaaagtgTTCATATATGTCCTGTGTTTGAGTACAGTATACCAT
GAAGAACTATGGCCATTTGATGACTAAATACTGCAAGTTAGATCACAATT
TAGTCAGATTTGACGTTTTACATTCCCTGGAGGTTCATGTGTTAGCTTTC
ATGTAATTCATGtcctaaaaactaattttctgTATTGTAATCAGTAAATA
TTTTGtgataataaaatttatttacaataaatacACTCCACCTTCCCCAG
ACATTAATGAGGGTAAGTTTATTCAAATCAACAAATCGACAAACCCACAT
ACCATTGCCAACCAACAAACCATTGCCAACCAACAAACTGGAACACCGGA
ACAACatcaaatttaataataatCTAATATCACCACAGTTTAAAAGGATG
CATGGAGACCAGTATGTGAGAGACATCTCAGAAAGGTGCTACTCCTCTAC
ATCCCTTAACATAATAATATAACATTGTAAGTGAAATCAGTGTAATAGAT
ATTGACATGTGTCTTCAATAATCATTTGTAATAGAGTCAATaataatcaa
tcaataaatcaatggtTCTCATTAGTTGTAACATAAATTCATCTTGACAG
CATGTCTATCATTAAATCGTATGAGTTTAGTATGCTGTGGATGGTATTTT
TTGTGCTTATTATTTtgccattttcttcttcttgaat Run BLAST on NCBI transcript from alignment at scaffold_500:6265..7851 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069489 ID=TCONS_00069489|Name=TCONS_00069489|organism=Clytia hemisphaerica|type=transcript|length=1587bp|location=Sequence derived from alignment at scaffold_500:6265..7851 (Clytia hemisphaerica)
attcaagaagaagaaaatggcaAAATAATAAGCACAAAAAATACCATCCA
CAGCATACTAAACTCATACGATTTAATGATAGACATGCTGTCAAGATGAA
TTTATGTTACAACTAATGAGAaccattgatttattgattgattattATTG
ACTCTATTACAAATGATTATTGAAGACACATGTCAATATCTATTACACTG
ATTTCACTTACAATGTTATATTATTATGTTAAGGGATGTAGAGGAGTAGC
ACCTTTCTGAGATGTCTCTCACATACTGGTCTCCATGCATCCTTTTAAAC
TGTGGTGATATTAGattattattaaatttgatGTTGTTCCGGTGTTCCAG
TTTGTTGGTTGGCAATGGTTTGTTGGTTGGCAATGGTATGTGGGTTTGTC
GATTTGTTGATTTGAATAAACTTACCCTCATTAATGTCTGGGGAAGGTGG
AGTgtatttattgtaaataaattttattatcaCAAAATATTTACTGATTA
CAATAcagaaaattagtttttaggaCATGAATTACATGAAAGCTAACACA
TGAACCTCCAGGGAATGTAAAACGTCAAATCTGACTAAATTGTGATCTAA
CTTGCAGTATTTAGTCATCAAATGGCCATAGTTCTTCATGGTATACTGTA
CTCAAACACAGGACATATATGAAcactttttttgctcagaatatTATTCA
CTGTCTGGCTACCAATCGCTTCCTTTGAATACAATTTTTAACCCACTTTT
AATACATTTTGCCTTCCATTATTGCTAGGCCTTAGCAGCTGATTCACttg
caaaaataatttcaaatacaTTCAAAAACTTTGGTAAATTATTATGATTG
TATTGGCAAAAAGATGTCACTCATCCTATAGCTTTCCCCTTTACTACTAC
GGATTGACATGAGTTCACCGTTGAAAAGGTCCAATCAGATGTTAAGTTAA
AGTTAATCTCGCTTTGGTTTGGACAGATATGTCCTTGGCAGATGTTCCAT
TAACAATCCATTTTGAACAGCTTTCTTTTGTTCTTGCTCTTTGCTCAGTC
ATGAAAAAACTATTGGTTCTGAAATACTGGCTCAAACTCTCCTGAAATCT
TTTCAACATGCTTCAATTTACGAATTATCTTGATGTATTTCCTTTGCATG
CTGATCAAGTGTTGGCAGTGTAGGCCCTTGTTCTGGTTGAAAGAAAGTCT
CCATCACAGTGAACGCAAACTAAAATTCAGTTTTTGAAGGTTCGGAAAGA
TTTGTTTTCTATATTAGATTGACATGTTAGTCCAGTTCACGTCTTCGGAT
CATATATGTATTTCAGTGAAAAGATCTTTTAGGTTTTGTTAGGGCCATAG
AGGCAGAAATAACCTCAAACTATCTTATTCTGTAGCAAAAAATGCTTTAT
TATGAGTTAGTATACTATTGCGGAAAGACTTCGACAAGTGATCCTACGAT
CAAGCTTCTTAAAACGAAACCAAAACTCCGATTCACGTATTGTAAACAAC
ATTGTAAACACATAAAGTCACTTGACAGGAAGTATGACAATGCTACGCCA
ATACCATTTTTGATGTTTAAAAATTCATTAATTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069489-exon-scaffold_500-1491911889:6265..7851 | TCONS_00069489-exon-scaffold_500-1491911889:6265..7851 | Clytia hemisphaerica | exon |
| TCONS_00069489-exon-scaffold_500-1510915933:6265..7851 | TCONS_00069489-exon-scaffold_500-1510915933:6265..7851 | Clytia hemisphaerica | exon |
| TCONS_00069489-exon-scaffold_500-1575043694:6265..7851 | TCONS_00069489-exon-scaffold_500-1575043694:6265..7851 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_500 | supercontig | scaffold_500:6265..7851 . |
Blast
The following BLAST results are available for this feature:
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