TCONS_00069488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069488
Unique NameTCONS_00069488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069488 ID=TCONS_00069488|Name=TCONS_00069488|organism=Clytia hemisphaerica|type=transcript|length=727bp
ACAAGATGAATACACCATTACCTCCAAAAGTATCAGGTAACAGCTGGCAA
ATTGAGAGTAATACACGGCTAGAGAAAAAAGTCACATGCTCGACTAGCAA
TTTCACAGACCACGAACCAATTCCATGTCGGAAGGGCTATATGTGTGATA
TACAACGACATGAGGATGAAAGGAATTCGATCCCAAATCGAGGCTTTTGC
ATCAAGAATCCCTTCAAAGaagTCGATCCGTTTAAGCCAATGGTAGTGTG
GGACGATGTAGACACAGAAAAACGAAAATTGATGATGTCAGCAAAATGGA
GTTAGTTATGGGAGTGAAATGGTATGAAATTTCAAAGCGAAAATGGTGTT
CACCTTGCACCTTTATCACTGCGTTCCAAAACTTTATGAAATTGAAATGA
AGAACAGAACCTCCATAAGACGTGCACCAAATTAAAACTCAGTAAGAAAT
ATTCATCAAGAATGAATGAAAGAAGACAACGTTGGTGGTATTAACCATTA
CCATTCAATCAGAGAGAACAACATTGTGTACTAATAGCAAGTTAACAATC
TACCGTAGAGAAAGATCACGATAAAGATTGCATTTGTTCTGTGTTCCGAG
GAGCTTTTGAATTTTGCTTGGaaatctgaaaaagattGCCACTGTAAAAA
TGAgctattgaaaaatttttgtatttatgtataaaaagaaattttttaaa
tctaagaAATCTGTAGTAAAATGATAT
Run BLAST on NCBI

transcript from alignment at scaffold_500:146884..149448-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069488 ID=TCONS_00069488|Name=TCONS_00069488|organism=Clytia hemisphaerica|type=transcript|length=2565bp|location=Sequence derived from alignment at scaffold_500:146884..149448- (Clytia hemisphaerica)
ACAAGATGAATACACCATTACCTCCAAAAGTATCAGGTTCGTGATTTTCG
ACTTTATTGATTTATATCAAAATCACCTGGCCTGGAGCTTTTTCTAACTT
TTCTTAGATATCATCACATAATTTATAATACCAGGGGGAGTAGGGTATTC
GAATCTCTGAAGACCGAACCTTAGAGAGACTAATTTTTTTGTAAAAAAGT
TGTTACTCTTAGTCAGAGTTTCTCTGCGAAAAATTTCCTAAGAGATATTT
TTGAATTTTATGGTTTCAATACCCTTAATAACCGAAAAGGGGATAATCAT
CCCAACCCTTATAGGGACTATTGTTACTTTTTTGTAGTACAAAAACTTGG
CATGTCAAAAATCTGACTCTCATCGTCCACACATACCCAACATCTATTTT
ATTGTTTCCATGTACCCCCTACTCCCGTTTGTAAAATACAAGCTTACCTG
ATGAGAATAGTTACCCAATGTTCAAACACTACTCCTAATTAAATTTTCAC
GGACTTGGATTATCTGTTTGTATGAAAACATTTATTTTTCTACAGGTAAC
AGCTGGCAAATTGAGAGTAATACACGGCTAGAGAAAAAAGTCACATGCTC
GACTAGCAATTTCACAGACCACGAACCAATTCCATGTCGGAAGGGCTATA
TGTGTGATATACAACGACATGAGGATGAAAGGAATTCGATCCCAAATCGA
GGCTTTTGCATCAAGAATCCCTTCAAAGGTAAAGTATACTTCTGCATGAG
AATTATCAAATCATTATCAACATAACTCAAGATCACGATCAAGATCATAG
ACTCAGACACCAGAGCCTTAGGTCGGTCTTTAACTTTTTCTTTTGATTCA
CTCAACAAATACCATAAACACCACAGCTTAGCTTTCTCTGAAATTAAACT
GTGGAGACAAACTGCAAGACTTTTATCGCGCATGTCTGATAGAGAGCAAG
ATAGAGAGCACATACCACCATTAGCTAAAGTAGATCGATTCCTAAAACTA
TATAAAAATATGTGTGCTATGCGCCGAGATTATCCTCTTTCAATGAATCT
TTTTTACGTTTCTTATTGTGATTGTTTGGTACGACTTTCATCCAAGATCT
TGGATGATTGCCATGGTTAAGTTTGTTCTCCCTGAGTGCATGTTGAATGA
AATCGCAGTTTCTCTTCACAGGATGATGTATGTGATATTTTCATGTTTCT
TTCTTTCTTTTTCAGAAGTCGATCCGTTTAAGCCAATGGTAGTGTGGGAC
GATGTAGACACAGGTACGTTGTCCGTCATTCTCATAGAATACCAAACCTC
CGCTGATATTCTACATTTTGCCTCCGGAACTAGTATTACTCTCGACAATG
CTAAGCTTTACCAACGTGTAAAAGAAGGAATTTCTAATTCAGAGTAGGCC
CAGAAAAGGCCCTATATCATCAACCACTTTGAATTCTCGAACATCTCAAC
AAGAACTTCCTTTCATCAGAATATCTTCTTTTATTCTTAGGGTGCTATTA
TCGAGGTCGAAAGCTGAAGGATGGAGAATATTTCTTCAATAAATGTAATT
TCTGGTAAGTTTTTTTTTAACTTTTCTTTATTGTCCACGTTCATACTTTC
ATTTGAGAATCAAGAATCTTTCCCTGGTCTTATACAATTCATGAAATCGC
CACCTGTTTACGTGTGGCGTGATTGGGGCTTTATTTTGCGTGGAGGCGTG
ATTCCATAATTTTCCGGCGCGATGTGTGATAGGGCAAGAGTTTGATGCGT
GATTTGGCTATTTTTAGCAATTTTTTTGCACGATCGTGATGAGACCAAAA
TTTGGCGTGATGACTCTCACCCCGCTGACAGGACCTCATTTTGTTCGCAG
AGATAATTTTAGTAGATGAATTTCATGCATGGGGAATGTGATAGGGCGCC
TTAAGTATAAACTTCTAAGCTATATTTCCGCTTGATTTTTATTTCAGCTT
TTGCTCGAACACTATTATCAATTGTCAAACAGCACCTTGTCATTCAACCA
AACGAACCAAGCTGTCTCGATTACCCATCTCTTATAACGACGAGTCAATG
AATTATATATAAATGAGCGAGATTAAACTGACACATTTTTATTCTAATAA
ATTAGAAAAACGAAAATTGATGATGTCAGCAAAATGGAGTTAGTTATGGG
AGTGAAATGGTATGAAATTTCAAAGCGAAAATGGTGTTCACCTTGCACCT
TTATCACTGCGTTCCAAAACTTTATGAAATTGAAATGAAGAACAGAACCT
CCATAAGACGTGCACCAAATTAAAACTCAGTAAGAAATATTCATCAAGAA
TGAATGAAAGAAGACAACGTTGGTGGTATTAACCATTACCATTCAATCAG
AGAGAACAACATTGTGTACTAATAGCAAGTTAACAATCTACCGTAGAGAA
AGATCACGATAAAGATTGCATTTGTTCTGTGTTCCGAGGAGCTTTTGAAT
TTTGCTTGGAAATCTGAAAAAGATTGCCACTGTAAAAATGAGCTATTGAA
AAATTTTTGTATTTATGTATAAAAAGAAATTTTTTAAATCTAAGAAATCT
GTAGTAAAATGATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043310XLOC_043310Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069488-exon-scaffold_500-1575043694:149413..149448TCONS_00069488-exon-scaffold_500-1575043694:149413..149448Clytia hemisphaericaexon
TCONS_00069488-exon-scaffold_500-1575043694:148721..148903TCONS_00069488-exon-scaffold_500-1575043694:148721..148903Clytia hemisphaericaexon
TCONS_00069488-exon-scaffold_500-1575043694:148186..148233TCONS_00069488-exon-scaffold_500-1575043694:148186..148233Clytia hemisphaericaexon
TCONS_00069488-exon-scaffold_500-1575043694:146884..147343TCONS_00069488-exon-scaffold_500-1575043694:146884..147343Clytia hemisphaericaexon
TCONS_00069488-exon-scaffold_500-1510915933:149413..149448TCONS_00069488-exon-scaffold_500-1510915933:149413..149448Clytia hemisphaericaexon
TCONS_00069488-exon-scaffold_500-1510915933:148721..148903TCONS_00069488-exon-scaffold_500-1510915933:148721..148903Clytia hemisphaericaexon
TCONS_00069488-exon-scaffold_500-1510915933:148186..148233TCONS_00069488-exon-scaffold_500-1510915933:148186..148233Clytia hemisphaericaexon
TCONS_00069488-exon-scaffold_500-1510915933:146884..147343TCONS_00069488-exon-scaffold_500-1510915933:146884..147343Clytia hemisphaericaexon
TCONS_00069488-exon-scaffold_500-1491911889:149413..149448TCONS_00069488-exon-scaffold_500-1491911889:149413..149448Clytia hemisphaericaexon
TCONS_00069488-exon-scaffold_500-1491911889:148721..148903TCONS_00069488-exon-scaffold_500-1491911889:148721..148903Clytia hemisphaericaexon
TCONS_00069488-exon-scaffold_500-1491911889:148186..148233TCONS_00069488-exon-scaffold_500-1491911889:148186..148233Clytia hemisphaericaexon
TCONS_00069488-exon-scaffold_500-1491911889:146884..147343TCONS_00069488-exon-scaffold_500-1491911889:146884..147343Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_500supercontigscaffold_500:146884..149448 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.113246	5.50461e-09	0.0252894	0.202636	0.802846	2.45616	0	0.293675	2.86282e-08	2.32354	0	0	1.74302	3.83277	1.05852	1.25728	1.91123	0.328634	2.67845	2.0302	3.99517	0.283191	0	1.74253	0.934728	2.19442	0.690477	2.394	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top