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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069456 ID=TCONS_00069456|Name=TCONS_00069456|organism=Clytia hemisphaerica|type=transcript|length=4406bpRun BLAST on NCBI transcript from alignment at scaffold_50:97329..114122- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069456 ID=TCONS_00069456|Name=TCONS_00069456|organism=Clytia hemisphaerica|type=transcript|length=16794bp|location=Sequence derived from alignment at scaffold_50:97329..114122- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00069456 vs. Swiss-Prot (Human)
Match: PTC1 (Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2) HSP 1 Score: 279.641 bits (714), Expect = 2.648e-76 Identity = 168/488 (34.43%), Postives = 258/488 (52.87%), Query Frame = 2
Query: 2282 KLSLTYFAQHYYGPFLVKTSTKIISMLVCLALLIISLVGVMQVEKGLDLSDMVPKQTTEYQYFSERQKYFSYYKVFVVIANNTDGTRFDYANNQQLVYDLHRKLYNVGKMVKTPNR----FWLDVFSSWLREWQTELREQWK------EKTKNGTLDKTCLPYCQNTMLEVQRIFELLTTPLRVSRPTNPIGCTLAKAPTSKESKKNIVHRSLVNEQNIINPDLFYLALSLWHTEDSLGLWESEVEMLPRPPITHINHHRCHFFPE----ILEAAP-EYSTISFEVHNIQTNEDYVQLIKDVRKICDEFKKKGLNSYPTGIPFTYWEQFVSLDDHLIVAITVLLSSIFLVALFCSMNLQAALFIVSFLGINLFETVGFIGLCGIKLSAISIIPLMMSVGAGTQFIVHSVMAFLNTEGTRDKRVRGSLEIMFASVFDCCLSSVIMIAMLASSKYDFIVRYFFQLMLWIILISMLNTLVFLPVMLSIGGP 3700
K +L+ FA+ +Y PFL+K K++ + + L LL +SL G +V GLDL+D+VP++T EY + + + KYFS+Y +++V + DY N Q L+YDLHR NV ++ N+ WL F WL+ Q W+ KNG+ D ++LL +P + + + LV+ IINP FY+ L+ W + D + S+ + P P H + + PE I A P EY+ F ++ ++ D+V+ I+ VR IC + GL+SYP G PF +WEQ++ L L++ I+V+L+ FLV +N A IV L + E G +GL GIKLSA+ ++ L+ SVG G +F VH +AFL G +++R +LE MFA V D +S+++ + MLA S++DFIVRYFF ++ + ++ +LN LV LPV+LS GP
Sbjct: 729 KWTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVT------QKADYPNIQHLLYDLHRSFSNVKYVMLEENKQLPKMWLHYFRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVL-------------AYKLLVQTGSRDKPID---------------ISQLTKQRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRP--EWVHDKADYMPETRLRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICSNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLFISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGP 1180 HSP 2 Score: 276.944 bits (707), Expect = 2.083e-75 Identity = 175/606 (28.88%), Postives = 299/606 (49.34%), Query Frame = 2
Query: 149 VRKKIHVNFYRLGCQIQKH---FLGVALFSFVILAVCIVVPLNKYGLTVETDIQNIWVASSGRLSEEVAYSEKTTGRKGFQNEAEFGYEVLMQTAKDESQNMLTSAALQDHLEMVKKVKDIKSKTFGVNWTLRHICDRYRPPDFGVAHEW-NQAIDNMVPCLVMTPLDCFWEGSIIASYGPHYTENLHMHLKSFHNRTLREGYKYHNPQDLVNYLGNSSSDQYMYKRVKRFVDKVGLGAGYMDRPCF--ATHKCPSSS---NVSK--DIAGEFQNGCYGVARKYMYWPKDVIVSKMFLDENG-FTSAHALQTVFKIQSPKTFLLDKEMSRVFASRQFGLKEATKVIDDWKLQFTKMVKEENEKRKSNSSNMLAFSTTSFKDLVKEFSNTP--RKSSTYVGLILLTVYSIFTLKRWSSTIYSYGGLGLIGVVCAVASVFAGLCLASFSRMSLNTISVQVLPFLALGLGLDNIYLMARTYVFVCDRREFKCKEIVGMCLGEVGLDITLASFANXTYVFVCDRREFKCKEIVGMCLGEVGLDITLASFANTCSFLLASFVPIGAVQTFAKQAAIIYGVNWFTVIFAFSSILSFDVVRQRHKHMDLLFCF 1924
+R K ++LGC IQK+ FL V L F AV + +ET+++ +WV GR+S E+ Y+ + G EA F ++++QT K+E N+LT+ AL HL+ + + + W L H+C Y+ + + +Q I+ + PCL++TPLDCFWEG+ + S + + +F D + +L Y + ++K +G GYMDRPC A CP+++ N +K D+A GC+G++RKYM+W +++IV + G SAHALQT+F++ +PK + + + +A +++ W+ + ++V + ++++ +L+F+TT+ D++K FS+ R +S Y +L+ Y+ T+ RW + S G +GL GV+ SV AGL L S +S N + QVLPFLALG+G+D+++L+A + + ++ G CL G + L S +N T +F +A+ +PI A++ F+ QAA++ N+ V+ F +ILS D+ R+ + +D+ CF
Sbjct: 79 LRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGL------KAANLETNVEELWVEVGGRVSRELNYTRQKIGE-----EAMFNPQLMIQTPKEEGANVLTTEALLQHLDSALQASRVHVYMYNRQWKLEHLC--YKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLRWTNF---------------DPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRTYVEVVHQS--VAQNSTQKVLSFTTTTLDDILKSFSDVSVIRVASGY---LLMLAYACLTMLRWDCS-KSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVT------------------------------------AFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCF 614 The following BLAST results are available for this feature:
BLAST of TCONS_00069456 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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