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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069455 ID=TCONS_00069455|Name=TCONS_00069455|organism=Clytia hemisphaerica|type=transcript|length=983bp
CCAAAATAtcgattcaattaaattgaaattgttaGAAACCTGTCTCAAAT
TAATGACACGATAAAATAATaagtttttgataattttgaaaaaaaaattg
ataccaAACAATAAGTATTTCATGCCTGGCTGAGTGCAATGTTAATTGTG
AAAATATTGGATATTCATTGGATGATCTCAAAGATGAACAATTCTTATTT
CTAAATGTTTTagacaaaaaaatgaaacttcgtGAAGGAGAACCTCCAGA
TTGGAATGATCACGAAAACTTTGGACCGTTGTTGCTAAAAGAGTTTGACC
ATCATCCTGGAGATAATGTCATTGATAAAGCAGTCTTTTTTGGCACTAAA
GGATTGATCGTTGgcAGTCTTTATGGTGGCTTCCACGCTGCAATCTTTGA
ACCAGCACTAGGAGTCAATGGATTAGGTTATGCTATGAGACACATAGCAA
CTTTCGGTGCTTTGACTGGTGGTGCAGGTCTTGTGTTAGGTGCAGGAATT
CCCATTGCACAAGCTGTTCGAAAGAAGAATGACCCCATCGCTTGGATGTG
GGGTGGATTTGCTGCTGGGGCCGTCTTCGCTCTCAAAAGTGGTCGCTTCG
GACGAGCAATACAATACGGATCTGCTACTGGGTTGTTCTTAGCTTTCACC
AAAACAATGGGCACTTATCAACGCCCGTACGTCGACCCGTGGGCTAATTT
ACGGCAGCCGAAACCAGACACGCTTCCTTTGTTCGATAAAGATGGTAACA
TGTATACACACAAAAGACAAAGTGCACAGGATTTGTGAGAGTATCATCGT
ATCATCGTGtatcatattattttttgtaaattcttaaattgaaataatgt
ttttaaaaccCTCAATCATCAATTATTAATTCAAAAGTTATTCAGTCGAT
GAAACGAAGCTCCTGAAACCATTTTCGATGTTTCAGAATACAGCAAAACC
TCTAATTAGCAAACTATTTTTCCCTGGTCGTTT Run BLAST on NCBI protein sequence of TCONS_00069455-protein >TCONS_00069455-protein ID=TCONS_00069455-protein|Name=TCONS_00069455-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MKLREGEPPDWNDHENFGPLLLKEFDHHPGDNVIDKAVFFGTKGLIVGSL
YGGFHAAIFEPALGVNGLGYAMRHIATFGALTGGAGLVLGAGIPIAQAVR
KKNDPIAWMWGGFAAGAVFALKSGRFGRAIQYGSATGLFLAFTKTMGTYQ
RPYVDPWANLRQPKPDTLPLFDKDGNMYTHKRQSAQDL Run BLAST on NCBI transcript from alignment at scaffold_50:245292..249605+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069455 ID=TCONS_00069455|Name=TCONS_00069455|organism=Clytia hemisphaerica|type=transcript|length=4314bp|location=Sequence derived from alignment at scaffold_50:245292..249605+ (Clytia hemisphaerica)
CCAAAATAtcgattcaattaaattgaaattgttaGAAACCTGTCTCAAAT
TAATGACACGATAAAATAATaagtttttgataattttgaaaaaaaaattg
ataccaAACAATAAGTATTTCATGCCTGGCTGAGTGCAATGTTAATTGTG
AAAATATTGGATATTCATTGGATGATCTCAAAGATGAACAATTCTTATTT
CTAAATGTTTTagacaaaaaaatgaaacttcgtGAAGGAGAACCTCCAGA
TTGGAATGATCACGAAAACTTTGGACCGTTGTTGCTAAAAGAGTTTGACC
ATCATCCTGGAGATAATGTCATTGATAAAGCAGTCTTTTTTGGCACTAAA
GGATTGATCGTTGGTAAGCCTTTACTTCTATTTCTACTCAAAGTGTAGCT
GAAAgctttcctgttttttttttacctccCTTGAATCCCTTTTCCTTTTA
CAGAGTCTTTCACAAAATGCAAAATTCCTTTGAAGGAAAAGATCTGACTG
cattcttcatttttaattttttaggcAGTCTTTATGGTGGCTTCCACGCT
GCAATCTTTGAACCAGCACTAGGAGTCAATGGATTAGGTTATGCTATGAG
ACACATAGCAACTTTCGGTGCTTTGACTGGTATGTACTCTCAAACAAAGC
TGCTTTCTTTAGATATAGAATTCGAGAAATCTTTAAATACCATTTATTGT
TTGTCCAGCCTTTTTATTGGTTTTTAACATAATTTGACGTGTTTGAAAGG
TTTTACTTAGAAAGTATTTAGAAGTTAAAatctttcgaattttttgaTCA
ATCAAATAAACAAGTGCTAAACCAAAAGAAAACTTACGCTATGATTAATA
CAAACTTACTGACCTCTGATTCGTAAAGAGAAACATGTAGATATTTCGTA
CAACCCGGTATTTCATCTCATTGATCGTTTTGACCATAATTTGTTCCTTC
TNAACTTTGTATTTAGCAAAATTACCAtttgtgaaaaaattattgggggg
ggcatagccccccccccttgcccccccagttgctacggcactggtTTAAA
TACCATTTATTGTTTGTCAGCCTTTTTATTGGTTTTTAACATAATTTGAC
GTGTTTGAAAGGTTTTACTACTTAGAAATTAGTGTTGGTTTAATTATCTT
TTGAATTTTATGATCGATCAAATGAACAAGTgctaaatcaaaaaaaaact
tacccTATGATTTATACAAACTTACTTACCTCAGAATCGTAAAGAGAAAC
ATGTAGATATTTCGTACAACCCGGTATTTCATCTCATTGCTCGTTTTGAC
CATAATTTGTTCCTTCTCTTTATACGTCAGGTGGTGCAGGTCTTGTGTTA
GGTGCAGGAATTCCCATTGCACAAGCTGTTCGAAAGAAGAATGACCCCAT
CGCTTGGATGTGGGGTGGATTTGCTGCTGGGGCCGTCTTCGCTCTCAAAA
GTAAGTCCTTTCACCAACTAAATTTCTAACCAGCTGACACCCCTTTTTAC
CCCTTGTTAAATGACAGGTCTCAGTGAGTTGATGAGAATTCTTAAGTTAA
GACATCATGAATAATTCAAAAGCGTTAATTGATATACCAGTCCAGATACA
AGTTTCCCAGAGATTCTGGGCCTTTTTCAAGGAACTTTACTAGCTTTACT
GTAAGGACTCGAAATTAAGTTTTCGTAGCACACCCAGTATAAAAACACCT
TGATTTTCGGGTAGGTATTTAAGTATAGAAAGCTTCgtaatttcatttca
atgtgTGTAAGAAGCTTTGGAGAGGTTTATGttgatttatgtaatttttg
GCAGGTTTTGATCATTTATTTTCGAGGAAAATAGCTAAGTAGAGTACTCC
TAATACGTTTTGGACAACAAAAGaagtgtttttcttaaagaaGAAATACT
AACCTACTAGTACAAATATTGTTCCACTTTTCAACAAATTTACACGATTT
CTTTCGTTTACCAAATGGTTTTAATCGTTTAAGAATCGTACCAATTTAAA
GTGATGTCAGGCTGAAACGTTATTAAacgattttaaacgtttttcttTGA
ACAAAAAGTGGTAAAacgatttgaaaagaaagtcttcAAGTTAAAACGAT
TTCCTAATTAATTAAACGAATTTGAAACTATCAAAACGAATTTGAAACTA
TCAAAACGAATTTCTTACCTCTAAAACGAATTTCTTACCTCTAAAACGAA
TATCTAAACTAGTAAACAAATATCTGAAATATTAAACGAATATCTAAACT
ATTAAACGATTACTAGCTAATAGCCAAGGCTTTTCAAATCCCCAACCATA
ATAAGCAAGGGATTTTCTACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
CGATTTTGAGTACACCAAAACGATTCTGAGAACACCAGAACGATTTTGAG
AACACCAGAACGATTTTGAGtacaccaaaacgattttgagtaCACTTAAA
CGAAATGTGGATATTTAAAACGGTTGTaaacgattttcaaaatttaaaac
gaACGAAAACGAATTCCTTTTCATAGTTTGTCAGTCATCGTTTAGAAAAC
GatttttcttctaatttttgGCTACTAAATCGTTTCATACCTTTTCACTG
TACGATTTTTTCTCAAACGattaaaacaatatttgtacACGGTCCCTAAC
TCTAATATTTAACTTAAAGATCTATAATTTCTCAATAGAcatgtatattt
atttttgaagacccagttttttgtgaaaaaatctcattttgttcaaaaat
tcagGGTAGCTTGGGAAAATGATTTAAGGAAGCCTGTTTGAAGACTTTTA
TTGTGAGGATGCCTGTTTGAAGACTTTTATTGTGAATTCCTTAAACGTCC
TTTATAGTGAATAGCCAtaaccatttttcattttctgattCGTTTTTCTA
GAAAAATACTCGCTGATCTGAATTTCCTATTAAAGGAATCTTCTTTCCAT
GTCGCTGACCTTTTCACCCTTTTTGTGGTGAAGAAAATGGAGTTAATTTG
GACATGGACATTGTACATTTGAAGCAGTATATTTTGGTTTACTAACAAAA
TGTTGATGTTTCATTTCAGGTGGTCGCTTCGGACGAGCAATACAATACGG
ATCTGCTACTGGGTTGTTCTTAGCTTTCACCAAAACAATGGGCACTTATC
AACGCCCGTACGTCGACCCGTGGGCTAATTTACGGCAGCCGAAACCAGAC
ACGCTTCCTTTGTTCGATAAAGATGGTAACATGTATACACACAAAAGACA
AAGTGCACAGGATTTGTGAGAGTATCATCGTATCATCGTGtatcatatta
ttttttgtaaattcttaaattgaaataatgtttttaaaaccCTCAATCAT
CAATTATTAATTCAAAAGTTATTCAGTCGATGAAACGAAGCTCCTGAAAC
CATTTTCGATGTTTCAGAATACAGCAAAACCTCTAATTAGCAAACTATTT
TTCCCTGGTCGTTT Coding sequence (CDS) from alignment at scaffold_50:245292..249605+ >TCONS_00069455 ID=TCONS_00069455|Name=TCONS_00069455|organism=Clytia hemisphaerica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_50:245292..249605+ (Clytia hemisphaerica)
atgaaacttcgtGAAGGAGAACCTCCAGATTGGAATGATCACGAAAACTT
TGGACCGTTGTTGCTAAAAGAGTTTGACCATCATCCTGGAGATAATGTCA
TTGATAAAGCAGTCTTTTTTGGCACTAAAGGATTGATCGTTGgcAGTCTT
TATGGTGGCTTCCACGCTGCAATCTTTGAACCAGCACTAGGAGTCAATGG
ATTAGGTTATGCTATGAGACACATAGCAACTTTCGGTGCTTTGACTGGTG
GTGCAGGTCTTGTGTTAGGTGCAGGAATTCCCATTGCACAAGCTGTTCGA
AAGAAGAATGACCCCATCGCTTGGATGTGGGGTGGATTTGCTGCTGGGGC
CGTCTTCGCTCTCAAAAGTGGTCGCTTCGGACGAGCAATACAATACGGAT
CTGCTACTGGGTTGTTCTTAGCTTTCACCAAAACAATGGGCACTTATCAA
CGCCCGTACGTCGACCCGTGGGCTAATTTACGGCAGCCGAAACCAGACAC
GCTTCCTTTGTTCGATAAAGATGGTAACATGTATACACACAAAAGACAAA
GTGCACAGGATTTGTGAatgaaacttcgtGAAGGAGAACCTCCAGATTGG
AATGATCACGAAAACTTTGGACCGTTGTTGCTAAAAGAGTTTGACCATCA
TCCTGGAGATAATGTCATTGATAAAGCAGTCTTTTTTGGCACTAAAGGAT
TGATCGTTGgcAGTCTTTATGGTGGCTTCCACGCTGCAATCTTTGAACCA
GCACTAGGAGTCAATGGATTAGGTTATGCTATGAGACACATAGCAACTTT
CGGTGCTTTGACTGGTGGTGCAGGTCTTGTGTTAGGTGCAGGAATTCCCA
TTGCACAAGCTGTTCGAAAGAAGAATGACCCCATCGCTTGGATGTGGGGT
GGATTTGCTGCTGGGGCCGTCTTCGCTCTCAAAAGTGGTCGCTTCGGACG
AGCAATACAATACGGATCTGCTACTGGGTTGTTCTTAGCTTTCACCAAAA
CAATGGGCACTTATCAACGCCCGTACGTCGACCCGTGGGCTAATTTACGG
CAGCCGAAACCAGACACGCTTCCTTTGTTCGATAAAGATGGTAACATGTA
TACACACAAAAGACAAAGTGCACAGGATTTGTGAatgaaacttcgtGAAG
GAGAACCTCCAGATTGGAATGATCACGAAAACTTTGGACCGTTGTTGCTA
AAAGAGTTTGACCATCATCCTGGAGATAATGTCATTGATAAAGCAGTCTT
TTTTGGCACTAAAGGATTGATCGTTGgcAGTCTTTATGGTGGCTTCCACG
CTGCAATCTTTGAACCAGCACTAGGAGTCAATGGATTAGGTTATGCTATG
AGACACATAGCAACTTTCGGTGCTTTGACTGGTGGTGCAGGTCTTGTGTT
AGGTGCAGGAATTCCCATTGCACAAGCTGTTCGAAAGAAGAATGACCCCA
TCGCTTGGATGTGGGGTGGATTTGCTGCTGGGGCCGTCTTCGCTCTCAAA
AGTGGTCGCTTCGGACGAGCAATACAATACGGATCTGCTACTGGGTTGTT
CTTAGCTTTCACCAAAACAATGGGCACTTATCAACGCCCGTACGTCGACC
CGTGGGCTAATTTACGGCAGCCGAAACCAGACACGCTTCCTTTGTTCGAT
AAAGATGGTAACATGTATACACACAAAAGACAAAGTGCACAGGATTTGTG
AatgaaacttcgtGAAGGAGAACCTCCAGATTGGAATGATCACGAAAACT
TTGGACCGTTGTTGCTAAAAGAGTTTGACCATCATCCTGGAGATAATGTC
ATTGATAAAGCAGTCTTTTTTGGCACTAAAGGATTGATCGTTGgcAGTCT
TTATGGTGGCTTCCACGCTGCAATCTTTGAACCAGCACTAGGAGTCAATG
GATTAGGTTATGCTATGAGACACATAGCAACTTTCGGTGCTTTGACTGGT
GGTGCAGGTCTTGTGTTAGGTGCAGGAATTCCCATTGCACAAGCTGTTCG
AAAGAAGAATGACCCCATCGCTTGGATGTGGGGTGGATTTGCTGCTGGGG
CCGTCTTCGCTCTCAAAAGTGGTCGCTTCGGACGAGCAATACAATACGGA
TCTGCTACTGGGTTGTTCTTAGCTTTCACCAAAACAATGGGCACTTATCA
ACGCCCGTACGTCGACCCGTGGGCTAATTTACGGCAGCCGAAACCAGACA
CGCTTCCTTTGTTCGATAAAGATGGTAACATGTATACACACAAAAGACAA
AGTGCACAGGATTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069455-exon-scaffold_50-1491911889:245292..245654 | TCONS_00069455-exon-scaffold_50-1491911889:245292..245654 | Clytia hemisphaerica | exon |
| TCONS_00069455-exon-scaffold_50-1510915933:245292..245654 | TCONS_00069455-exon-scaffold_50-1510915933:245292..245654 | Clytia hemisphaerica | exon |
| TCONS_00069455-exon-scaffold_50-1575043694:245292..245654 | TCONS_00069455-exon-scaffold_50-1575043694:245292..245654 | Clytia hemisphaerica | exon |
| TCONS_00069455-exon-scaffold_50-1491911889:245816..245920 | TCONS_00069455-exon-scaffold_50-1491911889:245816..245920 | Clytia hemisphaerica | exon |
| TCONS_00069455-exon-scaffold_50-1510915933:245816..245920 | TCONS_00069455-exon-scaffold_50-1510915933:245816..245920 | Clytia hemisphaerica | exon |
| TCONS_00069455-exon-scaffold_50-1575043694:245816..245920 | TCONS_00069455-exon-scaffold_50-1575043694:245816..245920 | Clytia hemisphaerica | exon |
| TCONS_00069455-exon-scaffold_50-1491911889:246622..246741 | TCONS_00069455-exon-scaffold_50-1491911889:246622..246741 | Clytia hemisphaerica | exon |
| TCONS_00069455-exon-scaffold_50-1510915933:246622..246741 | TCONS_00069455-exon-scaffold_50-1510915933:246622..246741 | Clytia hemisphaerica | exon |
| TCONS_00069455-exon-scaffold_50-1575043694:246622..246741 | TCONS_00069455-exon-scaffold_50-1575043694:246622..246741 | Clytia hemisphaerica | exon |
| TCONS_00069455-exon-scaffold_50-1491911889:249211..249605 | TCONS_00069455-exon-scaffold_50-1491911889:249211..249605 | Clytia hemisphaerica | exon |
| TCONS_00069455-exon-scaffold_50-1510915933:249211..249605 | TCONS_00069455-exon-scaffold_50-1510915933:249211..249605 | Clytia hemisphaerica | exon |
| TCONS_00069455-exon-scaffold_50-1575043694:249211..249605 | TCONS_00069455-exon-scaffold_50-1575043694:249211..249605 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_50 | supercontig | scaffold_50:245292..249605 + |
Blast
The following BLAST results are available for this feature:
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