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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069451 ID=TCONS_00069451|Name=TCONS_00069451|organism=Clytia hemisphaerica|type=transcript|length=2202bp
taaagtttgttttgatatgaaatttctTGTCTCGTGTGTTATATGTGATT
ATAAAGTGTTTGGTTTGATGTTCAGCTAGATGATGTTTGGGCGAAGTGAG
CATCTTTTTATCTCCGACGAATAAAAAAAGATCGAGGAAAGTAAGTTGTG
CATGTGCTGTCAACCCGAAACAAATTCTCTTGAGAAATGGAAACATGGAA
TTCAACATGCTACGACATTGATATGAAAGACGGGGGTAGACGGCGATATT
GCAATGTGACGGACCTGTGGCAACCGACCATCACAAAGACTGACGGATAT
GTTGCAGCTATATGTATCTTTATCTTTGCTGTTGTTGTAACTATCGTATC
TTTGCGCCGCATGAAATTTCTGAAAGATTTGTGCTGTGTGTTTGGTCGTG
ACGTAGGATGTTGCACGCTCAGCTCGTTCGTCTTTGCAGTAATTGCTGGT
GCAGTGTGGAAgattgctgacgtcatcattgattgtttcACATTTTATCG
ATTGGGAAGTGGAAGTTTGATCGATGGTTTGATCTACCGTAATGGACACG
TGTTGAACAGTATCGTCGCATTCACAGTGGTGGGAGTAGTGGGAATGATC
TTGCGTTTCCGCTTGGTGCATCTCAAGGCGGATGAcattcaaaataaaca
agacGTTCAGACGGTCAAGCTGTTGCTGGTCCTCATATCCTTTTGTTTGG
AAGATTCAGTTCAAATGTTTCTCGAGTATTTCTGGATCCAAAAGTACGTC
ACCATCAACATACCGACATATCTTGTCATCAAAGATACAATTATCGCCAT
CCTTTCTCTCTTCTCATTGGTCAGTTCCATTCTCCTATTACGTCAACAAT
CATCACGACGCGCCTTCATTTTCTTTGCGTTTGGCGTGATCATCAACATT
GCGGAGTATTTACGCATCTCTGCCGTTATCAAACAATACCGCAGGGGATC
TTTCGAGCATGATTGTTTGACAGTGAGAGATGGTAGGTTGTGGCAAACAC
CCTTCAATGGACAATGTCTGACGTCCACCGATAAATGGATCGTCGCCTTG
ACTTTCGTTCCTTTTGCTGCTTATCCTTTCTTAGTGGAAGCCTTCAAAAG
TGATATTCAATTGCTCTTCTCTAAATCCAAATGCTCTTCCACTGAACTTT
TAGTCGAAAGTTGAAACGCCTTATACGACCGATAGACCAAATAGATATCG
AAATCACCAAGTGAAATTATTACTTATGTAACAATAAGTCATCTTCGAAA
GAacttaaaacttaatttttaacTCAAGTGATAATCGGGTGATCcaattc
atttttttataagtgaGTAATAATACATTTTATGTTTATGTACATATAAA
AACTAAAGATAACTAAAAATATCATCATGTATATATTAATTCAAAAAATG
CCTTTCTTTGCTTTGGAAATCTAGAAAAGGTGTCTGTCTACCTTGCTTAG
GCACGATAGCTACAAAATCCCTGTCTCATAGCCCCGGTGAAAATTTTCCC
ATAGTGAGAACCGACCGGCGGGACCCTAAAAAGTTTCACATTTTCCATTG
AACGAGGatgaatgggccattccattttatatccatacaggagACTGGAC
GAAcatatccagggggtaatccgagaagaatttccagggggtctaaagtg
ttttttttttcatttttccagggggcaaaaagttgttcttaaaatttcaa
tGGAACATCCCAATATGTTCGAAAGCATTAGCTGAAAAATCAAAGCTCTA
TGTACATAAAATATAGTGTATATAAAACATTtcttaaaacataaaatttc
actttttcttaaaaagtcCCAATCTGAATAATTGGTATTCAGGAAACTAC
CCTCTTTCGAACGAAATGCATTGTAGATTTTCAGAGGAAAACCAAACATT
AATTGTTCATACTGACATTTTGAAGCCGTCTAGGACGACAATCTTCAGTG
AAGTAAATGTCTTGTAGACATTGATCTAATGTTTCTTTATCTTATGAACG
GTCGGTTTGTTCAAGACAGCTTATCTGCTTTGCACAATCGATCAAATTTA
TTCACGTTCTGAAGACGGCATGCTGAAGAAGTTCAGACGAAGAAGGTCGA
TTGGCTTCTTTCAGTTCCAAACAACGAAGCGTCAAATCTCGCATACCAGG
TCCCAGGGAGGATGGAATGTGTGGTCCCGTCGTTGAGCTTGCAATCTGAA
GA Run BLAST on NCBI protein sequence of TCONS_00069451-protein >TCONS_00069451-protein ID=TCONS_00069451-protein|Name=TCONS_00069451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
METWNSTCYDIDMKDGGRRRYCNVTDLWQPTITKTDGYVAAICIFIFAVV
VTIVSLRRMKFLKDLCCVFGRDVGCCTLSSFVFAVIAGAVWKIADVIIDC
FTFYRLGSGSLIDGLIYRNGHVLNSIVAFTVVGVVGMILRFRLVHLKADD
IQNKQDVQTVKLLLVLISFCLEDSVQMFLEYFWIQKYVTINIPTYLVIKD
TIIAILSLFSLVSSILLLRQQSSRRAFIFFAFGVIINIAEYLRISAVIKQ
YRRGSFEHDCLTVRDGRLWQTPFNGQCLTSTDKWIVALTFVPFAAYPFLV
EAFKSDIQLLFSKSKCSSTELLVES Run BLAST on NCBI transcript from alignment at scaffold_50:186342..189754+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069451 ID=TCONS_00069451|Name=TCONS_00069451|organism=Clytia hemisphaerica|type=transcript|length=3413bp|location=Sequence derived from alignment at scaffold_50:186342..189754+ (Clytia hemisphaerica)
taaagtttgttttgatatgaaatttctTGTCTCGTGTGTTATATGTGATT
ATAAAGTGTTTGGTTTGATGTTCAGCTAGATGATGTTTGGGCGAAGTGAG
CATCTTTTTATCTCCGACGAATAAAAAAAGATCGAGGAAAGTAAGTTGTG
CATGTGCTGTCAACCCGAAACAAATTCTCTTGAGAAATGGAAACATGGAA
TTCAACATGCTACGACATTGATATGAAAGACGGGGGTAGACGGCGATATT
GCAATGTGACGGACCTGTGGCAACCGACCATCACAAAGACTGACGGATAT
GTTGCAGCTATATGTATCTTTATCTTTGCTGTTGTTGTAACTATCGGTAA
GTAAAGTCTTTTCCAAATAATGGCGTAGTCCATGCAATTCATAATTCATA
ATTATCTTGGTTTAAAATCAATATCGTACCCCGAAGTACTTGTACCACTT
TTTGATTCTACTAATGATTGTTGGTTCGTGAGAGCACTGTCTGAACCATA
AAAAAACGATCTAAGGGACTGAGTTCGAGTTTGAGTTTGAGTTTGTTTCA
ACTTCCTTAAAACCTctgaaatgaagatgaaaaatgattattatGATTAa
tgattacacgctttttttttataagaatagtgtactttggttgagggtga
gcattattcttatttttctattgttctaaacaataggcctattgttttaa
acccgaaatctcaccctgatattcttatagaagttattcttataaaagaa
aaatcgtGTATTGCACttttaagaaagttttgaaCCTATCTGCAAAGGTT
GTATTTAAAGTATTTTGAGTGGATAACTTCAAAAGGCCTCTTAAGGTAAA
ATAGACTAAAAAGAGCAAAAATGTTTctatctttttttcgaaagcaACAT
TAAAGTATATTGTCCATCTTTGTCCTTCTTGAGCAATGTCTTGAAAGCCC
TAAATGAAAGGAATCAGGTACCCTCAAGCCCTCAAGCTCCAGTGAGTTAT
ATGTGAAAGACTTAAGTTAAGACATTTTACATCTGAACTTTTCAATAGTG
TTAGGATGTTAGGTAATCAAGGTAATTAAGGAgtttaaaaaagttgttaa
aatttCCTGAGAAGGTTTGAGCGAGAACATATAAATGCACATCTCAAtac
attcattcatttattcattcattttagTATCTTTGCGCCGCATGAAATTT
CTGAAAGATTTGTGCTGTGTGTTTGGTCGTGACGTAGGATGTTGCACGCT
CAGCTCGTTCGTCTTTGCAGTAATTGCTGGTGCAGTGTGGAAgattgctg
acgtcatcattgattgtttcACATTTTATCGATTGGGAAGTGGAAGTAAG
TCAAAAGACTGTTTGCGTTGATCAATTTTTATAGATAAATTTGATATCGA
AAAACTGAGATATCAATACTTGACGCCATTGTCTCAAAGCCCCGGTGAAA
CATTTCCTGATGGTAGTAGTGGTGAAAATTTCCATCGCGAAATCCCAATG
GgtaaaaacttttgaaagctcaaaaattccagtaAGGATGGTTTCAGGGG
GCCATTTTTTCCATTGATTTTGGGTAATgtcatgcttataaaaagtcAAC
TTCTCAGTGGGCGGCTGAAATCGTAAGGGTCCCACAGGGTCTGTGACACG
AGAGCGATACATGATTTTGGATCTCTGATGTATTTTGCGACTTACTCGTC
ATGTCTTTTACAATTCTATTTTCAGGTTTGATCGATGGTTTGATCTACCG
TAATGGACACGTGTTGAACAGTATCGTCGCATTCACAGTGGTGGGAGTAG
TGGGAATGATCTTGCGTTTCCGCTTGGTGCATCTCAAGGCGGATGAcatt
caaaataaacaagacGTTCAGACGGTCAAGCTGTTGCTGGTCCTCATATC
CTTTTGTTTGGAAGATTCAGTTCAAATGTTTCTCGAGTATTTCTGGATCC
AAAAGTACGTCACCATCAACATACCGACATATCTTGTCATCAAAGATACA
ATTATCGCCATCCTTTCTCTCTTCTCATTGGTCAGTTCCATTCTCCTATT
ACGTCAACAATCATCACGACGCGCCTTCATTTTCTTTGCGTTTGGCGTGA
TCATCAACATTGCGGAGTATTTACGCATCTCTGCCGTTATCAAACAATAC
CGCAGGGGATCTTTCGAGCATGATTGTTTGACAGTGAGAGATGGTAGGTT
GTGGCAAACACCCTTCAATGGACAATGTCTGACGTCCACCGATAAATGGA
TCGTCGCCTTGACTTTCGTTCCTTTTGCTGCTTATCCTTTCTTAGTGGAA
GCCTTCAAAAGTGATATTCAATTGCTCTTCTCTAAATCCAAATGCTCTTC
CACTGAACTTTTAGTCGAAAGTTGAAACGCCTTATACGACCGATAGACCA
AATAGATATCGAAATCACCAAGTGAAATTATTACTTATGTAACAATAAGT
CATCTTCGAAAGAacttaaaacttaatttttaacTCAAGTGATAATCGGG
TGATCcaattcatttttttataagtgaGTAATAATACATTTTATGTTTAT
GTACATATAAAAACTAAAGATAACTAAAAATATCATCATGTATATATTAA
TTCAAAAAATGCCTTTCTTTGCTTTGGAAATCTAGAAAAGGTGTCTGTCT
ACCTTGCTTAGGCACGATAGCTACAAAATCCCTGTCTCATAGCCCCGGTG
AAAATTTTCCCATAGTGAGAACCGACCGGCGGGACCCTAAAAAGTTTCAC
ATTTTCCATTGAACGAGGatgaatgggccattccattttatatccataca
ggagACTGGACGAAcatatccagggggtaatccgagaagaatttccaggg
ggtctaaagtgttttttttttcatttttccagggggcaaaaagttgttct
taaaatttcaatGGAACATCCCAATATGTTCGAAAGCATTAGCTGAAAAA
TCAAAGCTCTATGTACATAAAATATAGTGTATATAAAACATTtcttaaaa
cataaaatttcactttttcttaaaaagtcCCAATCTGAATAATTGGTATT
CAGGAAACTACCCTCTTTCGAACGAAATGCATTGTAGATTTTCAGAGGAA
AACCAAACATTAATTGTTCATACTGACATTTTGAAGCCGTCTAGGACGAC
AATCTTCAGTGAAGTAAATGTCTTGTAGACATTGATCTAATGTTTCTTTA
TCTTATGAACGGTCGGTTTGTTCAAGACAGCTTATCTGCTTTGCACAATC
GATCAAATTTATTCACGTTCTGAAGACGGCATGCTGAAGAAGTTCAGACG
AAGAAGGTCGATTGGCTTCTTTCAGTTCCAAACAACGAAGCGTCAAATCT
CGCATACCAGGTCCCAGGGAGGATGGAATGTGTGGTCCCGTCGTTGAGCT
TGCAATCTGAAGA Coding sequence (CDS) from alignment at scaffold_50:186342..189754+ >TCONS_00069451 ID=TCONS_00069451|Name=TCONS_00069451|organism=Clytia hemisphaerica|type=CDS|length=2934bp|location=Sequence derived from alignment at scaffold_50:186342..189754+ (Clytia hemisphaerica)
ATGGAAACATGGAATTCAACATGCTACGACATTGATATGAAAGACGGGGG
TAGACGGCGATATTGCAATGTGACGGACCTGTGGCAACCGACCATCACAA
AGACTGACGGATATGTTGCAGCTATATGTATCTTTATCTTTGCTGTTGTT
GTAACTATCGTATCTTTGCGCCGCATGAAATTTCTGAAAGATTTGTGCTG
TGTGTTTGGTCGTGACGTAGGATGTTGCACGCTCAGCTCGTTCGTCTTTG
CAGTAATTGCTGGTGCAGTGTGGAAgattgctgacgtcatcattgattgt
ttcACATTTTATCGATTGGGAAGTGGAAGTTTGATCGATGGTTTGATCTA
CCGTAATGGACACGTGTTGAACAGTATCGTCGCATTCACAGTGGTGGGAG
TAGTGGGAATGATCTTGCGTTTCCGCTTGGTGCATCTCAAGGCGGATGAc
attcaaaataaacaagacGTTCAGACGGTCAAGCTGTTGCTGGTCCTCAT
ATCCTTTTGTTTGGAAGATTCAGTTCAAATGTTTCTCGAGTATTTCTGGA
TCCAAAAGTACGTCACCATCAACATACCGACATATCTTGTCATCAAAGAT
ACAATTATCGCCATCCTTTCTCTCTTCTCATTGGTCAGTTCCATTCTCCT
ATTACGTCAACAATCATCACGACGCGCCTTCATTTTCTTTGCGTTTGGCG
TGATCATCAACATTGCGGAGTATTTACGCATCTCTGCCGTTATCAAACAA
TACCGCAGGGGATCTTTCGAGCATGATTGTTTGACAGTGAGAGATGGTAG
GTTGTGGCAAACACCCTTCAATGGACAATGTCTGACGTCCACCGATAAAT
GGATCGTCGCCTTGACTTTCGTTCCTTTTGCTGCTTATCCTTTCTTAGTG
GAAGCCTTCAAAAGTGATATTCAATTGCTCTTCTCTAAATCCAAATGCTC
TTCCACTGAACTTTTAGTCGAAAGTTGAATGGAAACATGGAATTCAACAT
GCTACGACATTGATATGAAAGACGGGGGTAGACGGCGATATTGCAATGTG
ACGGACCTGTGGCAACCGACCATCACAAAGACTGACGGATATGTTGCAGC
TATATGTATCTTTATCTTTGCTGTTGTTGTAACTATCGTATCTTTGCGCC
GCATGAAATTTCTGAAAGATTTGTGCTGTGTGTTTGGTCGTGACGTAGGA
TGTTGCACGCTCAGCTCGTTCGTCTTTGCAGTAATTGCTGGTGCAGTGTG
GAAgattgctgacgtcatcattgattgtttcACATTTTATCGATTGGGAA
GTGGAAGTTTGATCGATGGTTTGATCTACCGTAATGGACACGTGTTGAAC
AGTATCGTCGCATTCACAGTGGTGGGAGTAGTGGGAATGATCTTGCGTTT
CCGCTTGGTGCATCTCAAGGCGGATGAcattcaaaataaacaagacGTTC
AGACGGTCAAGCTGTTGCTGGTCCTCATATCCTTTTGTTTGGAAGATTCA
GTTCAAATGTTTCTCGAGTATTTCTGGATCCAAAAGTACGTCACCATCAA
CATACCGACATATCTTGTCATCAAAGATACAATTATCGCCATCCTTTCTC
TCTTCTCATTGGTCAGTTCCATTCTCCTATTACGTCAACAATCATCACGA
CGCGCCTTCATTTTCTTTGCGTTTGGCGTGATCATCAACATTGCGGAGTA
TTTACGCATCTCTGCCGTTATCAAACAATACCGCAGGGGATCTTTCGAGC
ATGATTGTTTGACAGTGAGAGATGGTAGGTTGTGGCAAACACCCTTCAAT
GGACAATGTCTGACGTCCACCGATAAATGGATCGTCGCCTTGACTTTCGT
TCCTTTTGCTGCTTATCCTTTCTTAGTGGAAGCCTTCAAAAGTGATATTC
AATTGCTCTTCTCTAAATCCAAATGCTCTTCCACTGAACTTTTAGTCGAA
AGTTGAATGGAAACATGGAATTCAACATGCTACGACATTGATATGAAAGA
CGGGGGTAGACGGCGATATTGCAATGTGACGGACCTGTGGCAACCGACCA
TCACAAAGACTGACGGATATGTTGCAGCTATATGTATCTTTATCTTTGCT
GTTGTTGTAACTATCGTATCTTTGCGCCGCATGAAATTTCTGAAAGATTT
GTGCTGTGTGTTTGGTCGTGACGTAGGATGTTGCACGCTCAGCTCGTTCG
TCTTTGCAGTAATTGCTGGTGCAGTGTGGAAgattgctgacgtcatcatt
gattgtttcACATTTTATCGATTGGGAAGTGGAAGTTTGATCGATGGTTT
GATCTACCGTAATGGACACGTGTTGAACAGTATCGTCGCATTCACAGTGG
TGGGAGTAGTGGGAATGATCTTGCGTTTCCGCTTGGTGCATCTCAAGGCG
GATGAcattcaaaataaacaagacGTTCAGACGGTCAAGCTGTTGCTGGT
CCTCATATCCTTTTGTTTGGAAGATTCAGTTCAAATGTTTCTCGAGTATT
TCTGGATCCAAAAGTACGTCACCATCAACATACCGACATATCTTGTCATC
AAAGATACAATTATCGCCATCCTTTCTCTCTTCTCATTGGTCAGTTCCAT
TCTCCTATTACGTCAACAATCATCACGACGCGCCTTCATTTTCTTTGCGT
TTGGCGTGATCATCAACATTGCGGAGTATTTACGCATCTCTGCCGTTATC
AAACAATACCGCAGGGGATCTTTCGAGCATGATTGTTTGACAGTGAGAGA
TGGTAGGTTGTGGCAAACACCCTTCAATGGACAATGTCTGACGTCCACCG
ATAAATGGATCGTCGCCTTGACTTTCGTTCCTTTTGCTGCTTATCCTTTC
TTAGTGGAAGCCTTCAAAAGTGATATTCAATTGCTCTTCTCTAAATCCAA
ATGCTCTTCCACTGAACTTTTAGTCGAAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00069451-exon-scaffold_50-1491911889:186342..186687 | TCONS_00069451-exon-scaffold_50-1491911889:186342..186687 | Clytia hemisphaerica | exon |
| TCONS_00069451-exon-scaffold_50-1510915933:186342..186687 | TCONS_00069451-exon-scaffold_50-1510915933:186342..186687 | Clytia hemisphaerica | exon |
| TCONS_00069451-exon-scaffold_50-1575043694:186342..186687 | TCONS_00069451-exon-scaffold_50-1575043694:186342..186687 | Clytia hemisphaerica | exon |
| TCONS_00069451-exon-scaffold_50-1491911889:187519..187686 | TCONS_00069451-exon-scaffold_50-1491911889:187519..187686 | Clytia hemisphaerica | exon |
| TCONS_00069451-exon-scaffold_50-1510915933:187519..187686 | TCONS_00069451-exon-scaffold_50-1510915933:187519..187686 | Clytia hemisphaerica | exon |
| TCONS_00069451-exon-scaffold_50-1575043694:187519..187686 | TCONS_00069451-exon-scaffold_50-1575043694:187519..187686 | Clytia hemisphaerica | exon |
| TCONS_00069451-exon-scaffold_50-1491911889:188067..189754 | TCONS_00069451-exon-scaffold_50-1491911889:188067..189754 | Clytia hemisphaerica | exon |
| TCONS_00069451-exon-scaffold_50-1510915933:188067..189754 | TCONS_00069451-exon-scaffold_50-1510915933:188067..189754 | Clytia hemisphaerica | exon |
| TCONS_00069451-exon-scaffold_50-1575043694:188067..189754 | TCONS_00069451-exon-scaffold_50-1575043694:188067..189754 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_50 | supercontig | scaffold_50:186342..189754 + |
Blast
The following BLAST results are available for this feature:
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