TCONS_00069443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069443
Unique NameTCONS_00069443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069443 ID=TCONS_00069443|Name=TCONS_00069443|organism=Clytia hemisphaerica|type=transcript|length=498bp
AATCAGAAGATATGTTTCCTGTTGTCGGGAAAGAATCTGGCGAGAAGAAA
CCTAAGAAACGAAAACAGAGTGGTAAAATGCccatgaaaacaatcgaaac
tCTTTCCGAAATGGCCAAACAATCTGAGGATAACAACAATATCTATGATA
GTGCTGAAAGCCCAAAGCCCCAGTTTGGAGGCATCAAACATATTAAACTT
CcagaatttcggaaatcaaCAGAAAAGGAAGATACAGAAGCAAGCTCTGT
TTACATGCATGCTGGTCTGAAACTGGATgcatttgattgttttcataAAT
CTTTGAATGAGTGTTTCTCTGGACGTAAAATGAGTGTCTCTGATGCTGCT
tacattttgaaacaaatttcaccaGCAATTATTATGAAAATTGTTAAAGA
GAATACAGCTACTTCATCAAGTAAAACTTCACAGACAGAACTTGGTGATA
TAACAGAGACAGTTGATCTTGAAGGATCAGTCGATTTGGAGGTTAGTG
Run BLAST on NCBI

protein sequence of TCONS_00069443-protein

>TCONS_00069443-protein ID=TCONS_00069443-protein|Name=TCONS_00069443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
SEDMFPVVGKESGEKKPKKRKQSGKMPMKTIETLSEMAKQSEDNNNIYDS
AESPKPQFGGIKHIKLPEFRKSTEKEDTEASSVYMHAGLKLDAFDCFHKS
LNECFSGRKMSVSDAAYILKQISPAIIMKIVKENTATSSSKTSQTELGDI
TETVDLEGSVDLEVS
Run BLAST on NCBI

transcript from alignment at scaffold_5:189393..189890

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069443 ID=TCONS_00069443|Name=TCONS_00069443|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at scaffold_5:189393..189890 (Clytia hemisphaerica)
CACTAACCTCCAAATCGACTGATCCTTCAAGATCAACTGTCTCTGTTATA
TCACCAAGTTCTGTCTGTGAAGTTTTACTTGATGAAGTAGCTGTATTCTC
TTTAACAATTTTCATAATAATTGCtggtgaaatttgtttcaaaatgtaAG
CAGCATCAGAGACACTCATTTTACGTCCAGAGAAACACTCATTCAAAGAT
TtatgaaaacaatcaaatgcATCCAGTTTCAGACCAGCATGCATGTAAAC
AGAGCTTGCTTCTGTATCTTCCTTTTCTGttgatttccgaaattctgGAA
GTTTAATATGTTTGATGCCTCCAAACTGGGGCTTTGGGCTTTCAGCACTA
TCATAGATATTGTTGTTATCCTCAGATTGTTTGGCCATTTCGGAAAGagt
ttcgattgttttcatggGCATTTTACCACTCTGTTTTCGTTTCTTAGGTT
TCTTCTCGCCAGATTCTTTCCCGACAACAGGAAACATATCTTCTGATT

Coding sequence (CDS) from alignment at scaffold_5:189393..189890

>TCONS_00069443 ID=TCONS_00069443|Name=TCONS_00069443|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_5:189393..189890 (Clytia hemisphaerica)
ACTAACCTCCAAATCGACTGATCCTTCAAGATCAACTGTCTCTGTTATAT
CACCAAGTTCTGTCTGTGAAGTTTTACTTGATGAAGTAGCTGTATTCTCT
TTAACAATTTTCATAATAATTGCtggtgaaatttgtttcaaaatgtaAGC
AGCATCAGAGACACTCATTTTACGTCCAGAGAAACACTCATTCAAAGATT
tatgaaaacaatcaaatgcATCCAGTTTCAGACCAGCATGCATGTAAACA
GAGCTTGCTTCTGTATCTTCCTTTTCTGttgatttccgaaattctgGAAG
TTTAATATGTTTGATGCCTCCAAACTGGGGCTTTGGGCTTTCAGCACTAT
CATAGATATTGTTGTTATCCTCAGATTGTTTGGCCATTTCGGAAAGagtt
tcgattgttttcatggGCATTTTACCACTCTGTTTTCGTTTCTTAGGTTT
CTTCTCGCCAGATTCTTTCCCGACAACAGGAAACATATCTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043278XLOC_043278Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069443-proteinTCONS_00069443-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069443-exon-scaffold_5-1491911889:189393..189890TCONS_00069443-exon-scaffold_5-1491911889:189393..189890Clytia hemisphaericaexon
TCONS_00069443-exon-scaffold_5-1510915933:189393..189890TCONS_00069443-exon-scaffold_5-1510915933:189393..189890Clytia hemisphaericaexon
TCONS_00069443-exon-scaffold_5-1575043694:189393..189890TCONS_00069443-exon-scaffold_5-1575043694:189393..189890Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:189393..189890 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.03317	4.54901	2.36292	0.951898	7.94636	7.19506	7.10225	7.53558	5.68963	8.84144	5.22365	5.55952	2.7759	3.05237	5.85542	9.35084	7.37246	3.87272	3.00143	1.50211	4.39159	3.99466	13.9347	17.4034	21.352	15.6449	4.37655	2.33539	20.9832	22.7668
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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