TCONS_00069442 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069442
Unique NameTCONS_00069442
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length976

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069442 ID=TCONS_00069442|Name=TCONS_00069442|organism=Clytia hemisphaerica|type=transcript|length=976bp
tttcacttttttgtaaCTAGTAAAATTTCCCTCGTTAGCCCTTCATCAAT
CTTCTTAACGACTTCTATATCAAAGAGCTCTGTATCGGTGATAAAGTTCA
CGAAATCAAAAGTACCCCCACCCACTCCAAAATAATGAGTCTTGGCAGCA
AACAAAGCTTTTCCTTTGGGTGCCAGAAGATCACTTAAAAAGTCACGTAT
TTTAGGGTAGTACTCGATATTATAAATCGTCTCTGATGAAAGAATCAATT
CAAATTGCTCCTTTTCTTTGATTTCACACGCCACTGCATCCCAATCACCT
GATATAAACTTGACACGTTCATTAGCGTTCACAATGNAATCGTCTCTGAT
GAAAGAATCAATTCAAATTGCTCCTTTTCTTTGATTTCACACGCCACGGC
ATCCCAATCACCTGATATAAACTTGACGCGTTCATTAGCGTTCACAATGT
CATTATCCTTGAGAGAAGCGTTAACAGTAGGTAATGTGAAAACATCAATT
ACTTCAGAATTATAATCTTGGAAATAAACAATATTTGCTCCTTTTAATAG
AGTAAACAAGCCTAGAAGCCCAGCACCACATCCCATATCCATTACGCGGG
CCTTATCGTAAACAATTAAATCGTTTTCGTGTAAATATTGCACCAAATCA
TACGTGCATTCCCATACTTTGAGCCCGCCTTCGTATTCCCCTGAATTCAA
ATCTGATGACGTAATCAATGATGTAATCTTTGAGTTAGTCACGTGATTAG
AAGCGCATTCTGGGTCAACGAAATGCATTTTGGTATCACCTATTTCGAAA
AAATTCCATTGGTAGTTTTCGAAACTAGAGCTGTTTTCGTTTGTAAAATC
GTGATCGTGTATATGGCATGGTCGTAAACTTTTGATTGattcttcatttt
tgaatatttcctcATTTCCATCTGCGGCACCACCGAAGTTaaatttaaat
gacattttcgtctgattttattttga
Run BLAST on NCBI

protein sequence of TCONS_00069442-protein

>TCONS_00069442-protein ID=TCONS_00069442-protein|Name=TCONS_00069442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MSFKFNFGGAADGNEEIFKNEESIKSLRPCHIHDHDFTNENSSSFENYQW
NFFEIGDTKMHFVDPECASNHVTNSKITSLITSSDLNSGEYEGGLKVWEC
TYDLVQYLHENDLIVYDKARVMDMGCGAGLLGLFTLLKGANIVYFQDYNS
EVIDVFTLPTVNASLKDNDIVNANERVKFISGDWDAVACEIKEKEQFELI
LSSETIXL
Run BLAST on NCBI

transcript from alignment at scaffold_5:124948..125923

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069442 ID=TCONS_00069442|Name=TCONS_00069442|organism=Clytia hemisphaerica|type=transcript|length=976bp|location=Sequence derived from alignment at scaffold_5:124948..125923 (Clytia hemisphaerica)
tcaaaataaaatcagacgaaaatgtcatttaaatttAACTTCGGTGGTGC
CGCAGATGGAAATgaggaaatattcaaaaatgaagaatCAATCAAAAGTT
TACGACCATGCCATATACACGATCACGATTTTACAAACGAAAACAGCTCT
AGTTTCGAAAACTACCAATGGAATTTTTTCGAAATAGGTGATACCAAAAT
GCATTTCGTTGACCCAGAATGCGCTTCTAATCACGTGACTAACTCAAAGA
TTACATCATTGATTACGTCATCAGATTTGAATTCAGGGGAATACGAAGGC
GGGCTCAAAGTATGGGAATGCACGTATGATTTGGTGCAATATTTACACGA
AAACGATTTAATTGTTTACGATAAGGCCCGCGTAATGGATATGGGATGTG
GTGCTGGGCTTCTAGGCTTGTTTACTCTATTAAAAGGAGCAAATATTGTT
TATTTCCAAGATTATAATTCTGAAGTAATTGATGTTTTCACATTACCTAC
TGTTAACGCTTCTCTCAAGGATAATGACATTGTGAACGCTAATGAACGCG
TCAAGTTTATATCAGGTGATTGGGATGCCGTGGCGTGTGAAATCAAAGAA
AAGGAGCAATTTGAATTGATTCTTTCATCAGAGACGATTNCATTGTGAAC
GCTAATGAACGTGTCAAGTTTATATCAGGTGATTGGGATGCAGTGGCGTG
TGAAATCAAAGAAAAGGAGCAATTTGAATTGATTCTTTCATCAGAGACGA
TTTATAATATCGAGTACTACCCTAAAATACGTGACTTTTTAAGTGATCTT
CTGGCACCCAAAGGAAAAGCTTTGTTTGCTGCCAAGACTCATTATTTTGG
AGTGGGTGGGGGTACTTTTGATTTCGTGAACTTTATCACCGATACAGAGC
TCTTTGATATAGAAGTCGTTAAGAAGATTGATGAAGGGCTAACGAGGGAA
ATTTTACTAGttacaaaaaagtgaaa

Coding sequence (CDS) from alignment at scaffold_5:124948..125923

>TCONS_00069442 ID=TCONS_00069442|Name=TCONS_00069442|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_5:124948..125923 (Clytia hemisphaerica)
atgtcatttaaatttAACTTCGGTGGTGCCGCAGATGGAAATgaggaaat
attcaaaaatgaagaatCAATCAAAAGTTTACGACCATGCCATATACACG
ATCACGATTTTACAAACGAAAACAGCTCTAGTTTCGAAAACTACCAATGG
AATTTTTTCGAAATAGGTGATACCAAAATGCATTTCGTTGACCCAGAATG
CGCTTCTAATCACGTGACTAACTCAAAGATTACATCATTGATTACGTCAT
CAGATTTGAATTCAGGGGAATACGAAGGCGGGCTCAAAGTATGGGAATGC
ACGTATGATTTGGTGCAATATTTACACGAAAACGATTTAATTGTTTACGA
TAAGGCCCGCGTAATGGATATGGGATGTGGTGCTGGGCTTCTAGGCTTGT
TTACTCTATTAAAAGGAGCAAATATTGTTTATTTCCAAGATTATAATTCT
GAAGTAATTGATGTTTTCACATTACCTACTGTTAACGCTTCTCTCAAGGA
TAATGACATTGTGAACGCTAATGAACGCGTCAAGTTTATATCAGGTGATT
GGGATGCCGTGGCGTGTGAAATCAAAGAAAAGGAGCAATTTGAATTGATT
CTTTCATCAGAGACGATTNCATTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043277XLOC_043277Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069442-proteinTCONS_00069442-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069442-exon-scaffold_5-1491911889:124948..125923TCONS_00069442-exon-scaffold_5-1491911889:124948..125923Clytia hemisphaericaexon
TCONS_00069442-exon-scaffold_5-1510915933:124948..125923TCONS_00069442-exon-scaffold_5-1510915933:124948..125923Clytia hemisphaericaexon
TCONS_00069442-exon-scaffold_5-1575043694:124948..125923TCONS_00069442-exon-scaffold_5-1575043694:124948..125923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:124948..125923 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.5065	12.8552	3.14235	1.43467	2.2456	2.26742	3.80598	4.62091	3.07929	2.94514	3.5147	2.77251	3.63002	3.64202	4.36003	6.00375	3.88904	5.69449	1.72096	1.02906	3.89083	4.25371	23.6007	17.6956	4.71791	6.64834	4.5666	3.38445	13.1943	15.1167
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019410Methyltransf_16
IPR029063SAM-dependent_MTases
Blast
[Close]
BLAST of TCONS_00069442 vs. Swiss-Prot (Human)
Match: MET18 (Histidine protein methyltransferase 1 homolog OS=Homo sapiens GN=METTL18 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.094e-24
Identity = 59/148 (39.86%), Postives = 87/148 (58.78%), Query Frame = -1 
Query:  338 SLITSSDLNSGEYEGGLKVWECTYDLVQYLHENDLIVYDKARVMDMGCGAGLLGLFTLLKGANIVYFQDYNSEVIDVFTLPTV--NASLKD--NDI------------VNANERVKFISGDWDAVACEIKEKE----QFELILSSETI 721
            S  + SDL +G YEGGLK+WECT+DL+ Y  +   + +   +V+D+GCG+GLLG+     G+  ++FQDYNS VID  TLP V  N++L+D  ND+            V    + +F SG+W      +   E    +++LIL+SETI
Sbjct:  150 SFSSHSDLITGVYEGGLKIWECTFDLLAYFTKAK-VKFAGKKVLDLGCGSGLLGITAFKGGSKEIHFQDYNSMVIDEVTLPNVVANSTLEDEENDVNEPDVKRCRKPKVTQLYKCRFFSGEWSEFCKLVLSSEKLFVKYDLILTSETI 296

HSP 2 Score: 84.3445 bits (207), Expect = 2.748e-18
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = -3 
Query:   12 RVKFISGDWDAVACEIKEKEQ----FELILSSETIYNIEYYPKIRDFLSDLLAPKGKALFAAKTHYFGVGGGTFDFVNFITDTELFDIEVVKKIDEGLTREILLVT 317
            + +F SG+W      +   E+    ++LIL+SETIYN +YY  +      LL+  G+ L A+K HYFGVGGG   F  F+ + ++F   ++K IDEGL R I+ +T
Sbjct:  262 KCRFFSGEWSEFCKLVLSSEKLFVKYDLILTSETIYNPDYYSNLHQTFLRLLSKNGRVLLASKAHYFGVGGGVHLFQKFVEERDVFKTRILKIIDEGLKRFIIEIT 367
The following BLAST results are available for this feature:
BLAST of TCONS_00069442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MET184.094e-2439.86Histidine protein methyltransferase 1 homolog OS=H... [more]
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