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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069437 ID=TCONS_00069437|Name=TCONS_00069437|organism=Clytia hemisphaerica|type=transcript|length=1339bp
TTCAGCTTATGGATTTGTTCTTGAAAGGTGATTGGTCAACGTACTTGAGT
GACCATGGTAACGCGAATAGTAAATACAATCGTGTCAAAGCGTCTGACGT
CATGAGACTTCTCGAAAAGATGATTGACACGACAAGCAAGCTGAACAAAC
TCAACATCAACTTCAAAAAATCTGATCGTGAAAAGAAGAAATTCatggaa
aatttgatgaagaagttgAAGGATTTATGAAAAAGGCGAGctacaaaaac
aacaaatgtCCATTCTTTTCAAGGGTGACCAAGAGTTTGACCTGAGTCAA
TGGTTGACCCCCCTGGGTTTAGTTCTATACGTGATTCAACCGTCCAACTG
AGAATAAAGACGTCAATGACTTTCACGTAAGCATTGCATCTAAAAGATGT
TGGTCGGTTATGATGGATGTTTTGACTATCCTTTTTTCACAAACAAAACG
AGAATAATGCATCGTGGTGGTACAATCTATTTCTAGAGTGAAACCGTCAT
CGTAGCAATTTGGTTTATTGgacattttattttgtattatgACAGAAAAC
GTTGAGAGGAAATTGGAGATTCATTTGATTGTAATACAAACCCCCTGGCT
GCTATTTTAGAATGCCTGTGAGGAGATTTCCTTCACTCGCCGTCAGATGA
ATGGAAAAATATGCAATCATTTAAAACAAGAATTGTATTGGGATGGGAGG
GCAAGGTCAAATAGTTTCCTTTTTCGTCATCCATTAAAttcatttcgaaa
gaaatcaGACATGTGCTATATACCCAGTTCCTGACCACCAGTTCCTGATG
GGTTCATGTAACCTAAATACCTTTACAGTACTTTGTCCTAAAGacagtgt
ttttttttgtaacatAGCTACACAAGTAGTCAACAGTATTCAAGTCTGGA
AATGAGAACAGTTCTCCTTTTGTCGATGCATTAGGCTTAGAAATAGGGTT
GACTTTAAACCTTTCCCAGGACACTACACGAGTGTGGTAGTTGGTATCAN
AAATAGGGTTGACTTTAAACCTTTCCCAGGACACTACACAAGTGTGGTAG
TTGGTATCGCAATAAGCTCTTTTATAATTCGTATGTTTTTTGGCAATATG
TTAACGATGTCAATAATTTTGACCGGATAGATGATGATTACAATTAACTT
TATTTTTgatacaaacaaaaaaatgtagcATGATTTAATACAAATCTTTG
TAAATAGAATTtaaatgtaatttaaaaaaCATACATTCAATTATAATTTG
TTTCCTTCCCTATTATTCGATCATACCGAAAACAAcctgttatttttatt
tgtaagTATTACTTTAGGCGCtcaaactttcgcgatttt Run BLAST on NCBI transcript from alignment at scaffold_5:149916..152921- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069437 ID=TCONS_00069437|Name=TCONS_00069437|organism=Clytia hemisphaerica|type=transcript|length=3006bp|location=Sequence derived from alignment at scaffold_5:149916..152921- (Clytia hemisphaerica)
TTCAGCTTATGGATTTGTTCTTGAAAGGTGATTGGTCAACGTACTTGAGT
GACCATGGTAACGCGAATAGTAAATACAATCGTGTCAAAGCGTCTGACGT
CATGAGACTTCTCGAAAAGTAAGTCCTTATTTTCCTCCTCATGCTAAATA
ATTTCACATTCTATTGCCTTAGTTTTATTTGCTGGACACTAGGATCAATG
CTTTTATTTCTATGAAGTGTACAAAAGATTGCCAGATTTTAACCGCTGCC
AAACTCGAGAAAAGCGTACCGGTCATCGTCCATCAGGAGGGTTACAGTCC
TTGTAGGATATTTACACCCTCGTGTCACAGACCAAGTGGGACTGGAAAAT
TCGGTCTTTTCCGATTGGAGAAATACCCTAAAAATCCAGTACTGATTTTA
ATACATTTGAACCCATTTTGAGTTTTTAAAGTAAAGAAAGTTAGCAACAT
TTAAGCGAAAAAAAAATCAAGAATAGGCCAGCCTGAGCCAAAATTTACTG
ATTCTTATAAGAAAGATCGTGTAATCTAAATTGTAGGTTTCTTAGTTCAA
CTTGTCTCTTTTTCGGGATACGAATCTGTTATTTACTTTACGGAGACTTG
CAAGCTTAACCTTTTCACCGTAGGCTCCTTCTTATGAATAAGCAGGTGAC
TTGTGGATTCGTTGGGATCCTAATTCACGAGTCTTCATAATATAGTGGTT
TTTGATATATTTTATTCAATCATATTTATTCCTCTTCATTTTCATTTCTA
TAAATTTCATTCATTCTTTTCTGTTCAAATTCATGTAGCGGCTTTTTTAT
GTTCCGAAGTCGAAGTCTCCAAAAAATTAGTGTTTTCAAAACATGTTTCT
TTTTTCCCCCGAATAAGCCTTTTCCTCCTCATCATTATCACAGGTCTCCT
TTTTTTTCTTGGAAAGCCACTTATTAAAGCATTTCCCAACTTCGCGACTT
TCTTCAGTAAACATCAAAACAACATCTTGAACTCGCATGGGAAAGCTATT
TATTTAACCAGTTTAGTCTTGGTTTCGATACTTTTTCTTGGGAAAATGCC
TCGAATGAGATTCTTAAGAGCAAATGTTTTTTCCTTTCTTCTTCTTCATT
TTTTCTTCCTTTTTTGTATTTTTACTTCATCCCAATAACTGAAGGAGTTT
TCTCTCCATCCATAGCGTGGTTCATTCAGCTGCTCAGTTTTGATATTTCA
TTTGAGGACATATGACTCTTTTATGAGTTTTTCTTCTATGATTATCATGG
CCAAAAATCGAAATAACACTCTTGTTTAACTTGTTAAACCCTCACTCACG
AATGTTTCTCTATGTAGAGAACGGTGCGATTTAAATCTTATATCTAAATT
CCCTCATATCACAAATTCTATTTCTAGATTTAAACTCATACCATAATGAG
GAGTAAAAACAGTCCCAACGAGTCTTTAAATCATATACATACCCGTCAAT
TCTTTCCACATTTTCCGTCACACCGCCGAAATTCCAACACCAAAAATTTC
TTCAAAATTTGATTTTTTGTCGACAATCCCAAAATGTTTGACTTTTTCGT
GCCGATTTCGAAATTCCAACTCGTTTTTTGTTTAATTCCGCTTTTCCGAA
TAAAAATACAAAATAGCCCGATTCTCTGTCTCCGACAGTGTAACTACACG
CGACTTGTTCTACACTATCCCTGCCTTTGTGGCTTATTAGAATGAAAACT
ACTTAGCAGTTAGCTCAAATAAAGATCCCCCTATCGAGGGATTTAGCATG
GTATTAATGAATGCATTGTGTCTATTTTTTTGCAGGATGATTGACACGAC
AAGCAAGCTGAACAAACTCAACATCAACTTCAAAAAATCTGATCGTGAAA
AGAAGAAATTCATGGAAAATTTGATGAAGAAGTTGAAGGATTTATGAAAA
AGGCGAGCTACAAAAACAACAAATGTCCATTCTTTTCAAGGGTGACCAAG
AGTTTGACCTGAGTCAATGGTTGACCCCCCTGGGTTTAGTTCTATACGTG
ATTCAACCGTCCAACTGAGAATAAAGACGTCAATGACTTTCACGTAAGCA
TTGCATCTAAAAGATGTTGGTCGGTTATGATGGATGTTTTGACTATCCTT
TTTTCACAAACAAAACGAGAATAATGCATCGTGGTGGTACAATCTATTTC
TAGAGTGAAACCGTCATCGTAGCAATTTGGTTTATTGGACATTTTATTTT
GTATTATGACAGAAAACGTTGAGAGGAAATTGGAGATTCATTTGATTGTA
ATACAAACCCCCTGGCTGCTATTTTAGAATGCCTGTGAGGAGATTTCCTT
CACTCGCCGTCAGATGAATGGAAAAATATGCAATCATTTAAAACAAGAAT
TGTATTGGGATGGGAGGGCAAGGTCAAATAGTTTCCTTTTTCGTCATCCA
TTAAATTCATTTCGAAAGAAATCAGACATGTGCTATATACCCAGTTCCTG
ACCACCAGTTCCTGATGGGTTCATGTAACCTAAATACCTTTACAGTACTT
TGTCCTAAAGACAGTGTTTTTTTTTGTAACATAGCTACACAAGTAGTCAA
CAGTATTCAAGTCTGGAAATGAGAACAGTTCTCCTTTTGTCGATGCATTA
GGCTTAGAAATAGGGTTGACTTTAAACCTTTCCCAGGACACTACACGAGT
GTGGTAGTTGGTATCANAAATAGGGTTGACTTTAAACCTTTCCCAGGACA
CTACACAAGTGTGGTAGTTGGTATCGCAATAAGCTCTTTTATAATTCGTA
TGTTTTTTGGCAATATGTTAACGATGTCAATAATTTTGACCGGATAGATG
ATGATTACAATTAACTTTATTTTTGATACAAACAAAAAAATGTAGCATGA
TTTAATACAAATCTTTGTAAATAGAATTTAAATGTAATTTAAAAAACATA
CATTCAATTATAATTTGTTTCCTTCCCTATTATTCGATCATACCGAAAAC
AACCTGTTATTTTTATTTGTAAGTATTACTTTAGGCGCTCAAACTTTCGC
GATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069437-exon-scaffold_5-1575043694:152804..152921 | TCONS_00069437-exon-scaffold_5-1575043694:152804..152921 | Clytia hemisphaerica | exon |
| TCONS_00069437-exon-scaffold_5-1575043694:149916..151136 | TCONS_00069437-exon-scaffold_5-1575043694:149916..151136 | Clytia hemisphaerica | exon |
| TCONS_00069437-exon-scaffold_5-1510915933:152804..152921 | TCONS_00069437-exon-scaffold_5-1510915933:152804..152921 | Clytia hemisphaerica | exon |
| TCONS_00069437-exon-scaffold_5-1510915933:149916..151136 | TCONS_00069437-exon-scaffold_5-1510915933:149916..151136 | Clytia hemisphaerica | exon |
| TCONS_00069437-exon-scaffold_5-1491911889:152804..152921 | TCONS_00069437-exon-scaffold_5-1491911889:152804..152921 | Clytia hemisphaerica | exon |
| TCONS_00069437-exon-scaffold_5-1491911889:149916..151136 | TCONS_00069437-exon-scaffold_5-1491911889:149916..151136 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:149916..152921 - |
Blast
The following BLAST results are available for this feature:
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