TCONS_00069435 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069435
Unique NameTCONS_00069435
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1019

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069435 ID=TCONS_00069435|Name=TCONS_00069435|organism=Clytia hemisphaerica|type=transcript|length=1019bp
aacactttttccctctttttttcagctaaaatattgaacaaaaatgggtt
gatcgccaaaattaattctcgccaaatttagaaatttcattaaatcgcca
aaataaattgcCGATCGGGCTCATTCACCAAAATTtattctcgctaaaat
ttcttctcttaaggtaaagCTAGAAATGGATGGAAAAGGTCTATCAAAGT
TTTCATACCATGGAACCTTAAGACATCGACGTTTGCTAACGAAAATTAAA
TAGAAAACAATATTTACGAATACTAAAGTGCACAATGGAAAAGTAATCAA
TAGAATATTATTAATTTATCTTATTATACAAAATATCTTCGgtaataccg
ggtgcgccaaaaaatcttttttgagacACCCGGTATAGTTGCAGAAAAAC
CACGAATGTCTATTTGATAGCTTATATTGAGCCTGGTTGCTGCTTTCTTC
GTTATCCCTCACGTTTAGGAGAAGCCAATGTAAAATATTCCCAAGCAGAT
AAAGCAAGGATATATCAATAAAATCGCAATGTAGAGGTAAACCATGACGA
TTAACAGAGCTTCGTCTTCTTCATTAGATGCTTCTCAAGAAAACTGTAAC
TTTAAGGACGAGGCTCGTCTCAAGTATCATTATTTATTCTTCTTGAGGTA
AAGGTAACATTTGTTGAATAATATTGATCAACTTCTCTAATTCTTCCTCA
GTTTTCAGACGTTCGTCCAACTCCTCAACGATCAATTGCATCTCAACAAT
CGACGTTGGTCTCAAGTTCAATAATTGCAATTTTTCTGCTTTGGTGAAAT
TGTACGGTGCTAAAGCGGTCATGAATTTCTGTACGGCTTCCGTGTCTTGA
TGCTTGGCAGGCGTCTTCTCAAGGTATTTGATGGTTTCGTAAGCTACGGT
TGCCACATTAGTGATCCGGTgttcaatcaatttttcatcttccaGGAGTT
GGAAGACTTCAGCGTTACTTAAAGTTGCCACATTCTCATTCACTACCTCC
ATTCTATATTATTGTTCTA
Run BLAST on NCBI

transcript from alignment at scaffold_5:121073..122091-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069435 ID=TCONS_00069435|Name=TCONS_00069435|organism=Clytia hemisphaerica|type=transcript|length=1019bp|location=Sequence derived from alignment at scaffold_5:121073..122091- (Clytia hemisphaerica)
AACACTTTTTCCCTCTTTTTTTCAGCTAAAATATTGAACAAAAATGGGTT
GATCGCCAAAATTAATTCTCGCCAAATTTAGAAATTTCATTAAATCGCCA
AAATAAATTGCCGATCGGGCTCATTCACCAAAATTTATTCTCGCTAAAAT
TTCTTCTCTTAAGGTAAAGCTAGAAATGGATGGAAAAGGTCTATCAAAGT
TTTCATACCATGGAACCTTAAGACATCGACGTTTGCTAACGAAAATTAAA
TAGAAAACAATATTTACGAATACTAAAGTGCACAATGGAAAAGTAATCAA
TAGAATATTATTAATTTATCTTATTATACAAAATATCTTCGGTAATACCG
GGTGCGCCAAAAAATCTTTTTTGAGACACCCGGTATAGTTGCAGAAAAAC
CACGAATGTCTATTTGATAGCTTATATTGAGCCTGGTTGCTGCTTTCTTC
GTTATCCCTCACGTTTAGGAGAAGCCAATGTAAAATATTCCCAAGCAGAT
AAAGCAAGGATATATCAATAAAATCGCAATGTAGAGGTAAACCATGACGA
TTAACAGAGCTTCGTCTTCTTCATTAGATGCTTCTCAAGAAAACTGTAAC
TTTAAGGACGAGGCTCGTCTCAAGTATCATTATTTATTCTTCTTGAGGTA
AAGGTAACATTTGTTGAATAATATTGATCAACTTCTCTAATTCTTCCTCA
GTTTTCAGACGTTCGTCCAACTCCTCAACGATCAATTGCATCTCAACAAT
CGACGTTGGTCTCAAGTTCAATAATTGCAATTTTTCTGCTTTGGTGAAAT
TGTACGGTGCTAAAGCGGTCATGAATTTCTGTACGGCTTCCGTGTCTTGA
TGCTTGGCAGGCGTCTTCTCAAGGTATTTGATGGTTTCGTAAGCTACGGT
TGCCACATTAGTGATCCGGTGTTCAATCAATTTTTCATCTTCCAGGAGTT
GGAAGACTTCAGCGTTACTTAAAGTTGCCACATTCTCATTCACTACCTCC
ATTCTATATTATTGTTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043271XLOC_043271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069435-exon-scaffold_5-1575043694:121073..122091TCONS_00069435-exon-scaffold_5-1575043694:121073..122091Clytia hemisphaericaexon
TCONS_00069435-exon-scaffold_5-1510915933:121073..122091TCONS_00069435-exon-scaffold_5-1510915933:121073..122091Clytia hemisphaericaexon
TCONS_00069435-exon-scaffold_5-1491911889:121073..122091TCONS_00069435-exon-scaffold_5-1491911889:121073..122091Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:121073..122091 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
59.9743	55.8059	51.9641	47.2533	11.4533	8.7221	15.96	16.1377	13.9786	12.5643	9.84173	8.20416	9.92494	9.62648	11.3918	10.8096	16.3814	13.4865	7.63252	9.55294	9.32413	11.4529	31.1542	27.9568	7.9356	13.018	9.36262	5.87161	11.9539	13.2936
Blast
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BLAST of TCONS_00069435 vs. Swiss-Prot (Human)
Match: RPC9 (DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens GN=CRCP PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.900e-22
Identity = 53/103 (51.46%), Postives = 66/103 (64.08%), Query Frame = -3 
Query:  727 MEVVNENVATLSNAEVFQLLEDEKLIEHRI-----------TNVATVAYETIKYLEKTPAKHQDTEAVQKFMTALAPYNFTKAEKLQLLNLRPTSIVEMQLIV 1002
            MEV + N A LSN EVFQLL D  L E R             N+ T+ YET+KY+ KTP +HQ  E V++F+TAL  +  TKAEKLQLLN RP + VE+QL+V
Sbjct:    1 MEVKDANSALLSNYEVFQLLTD--LKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMV 101
The following BLAST results are available for this feature:
BLAST of TCONS_00069435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPC91.900e-2251.46DNA-directed RNA polymerase III subunit RPC9 OS=Ho... [more]
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