TCONS_00069423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069423
Unique NameTCONS_00069423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069423 ID=TCONS_00069423|Name=TCONS_00069423|organism=Clytia hemisphaerica|type=transcript|length=557bp
CTTTTAAAGAAGTTGtcgattgaaaaaataaaattaaattcaccATGAAA
GTTTTCATCCTCCTTTCTGTCATCGTTGCATCATATGCTTTGGAAGTCAC
CAAAGTGACTGGAACAACACCACCAGCTGTCCCATGCCCAGACTCTCTCT
GTAAAGGAAAAGCTGATGGAAACTTCGAATACTACTACTATGGTCAATAC
AGACGTAACTACTTTGTCCAATGCTCCAACGGATTAGCTTACTGTCAACC
ATGCTTTCCTCTCTCTTTGGAATTCAGCGAAACATGCAACCAATGTCTTT
ACAGTAAACAtgATAAATGCGTCACCACCGAAGCATGGGAACCAGCCACC
ACCTTCGAATGTCCAGACAAATGCCCACACCGTGGACCACACTTCAATGG
AAACATTGCTGACCCCAACAACCCACATCAATATGTTGCTTGTTGGCATG
GAGCAACTGTCGGATGCATCGCTTGTCCAAAAGGATTATTGTTCAACGAG
AAATGGAACGCCTGTTTGTTTGATGGCAAATACAAGACCGAACCAGAACA
AAGAAAT
Run BLAST on NCBI

protein sequence of TCONS_00069423-protein

>TCONS_00069423-protein ID=TCONS_00069423-protein|Name=TCONS_00069423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MKVFILLSVIVASYALEVTKVTGTTPPAVPCPDSLCKGKADGNFEYYYYG
QYRRNYFVQCSNGLAYCQPCFPLSLEFSETCNQCLYSKHDKCVTTEAWEP
ATTFECPDKCPHRGPHFNGNIADPNNPHQYVACWHGATVGCIACPKGLLF
NEKWNACLFDGKYKTEPEQRN
Run BLAST on NCBI

transcript from alignment at scaffold_5:226583..227640+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069423 ID=TCONS_00069423|Name=TCONS_00069423|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at scaffold_5:226583..227640+ (Clytia hemisphaerica)
CTTTTAAAGAAGTTGtcgattgaaaaaataaaattaaattcaccATGAAA
GTTTTCATCCTCCTTTCTGTCATCGTTGGTAAGTTaactattttttttaa
tgtgaGCTGAAATATCAAAACGATAGTCTATCCATGTGATCAGtctattt
attttctttgtgttATTTCTGATTCAACCTTTCAGCATCATATGCTTTGG
AAGTCACCAAAGTGACTGGAACAACACCACCAGCTGTCCCATGCCCAGAC
TCTCTCTGTAAAGGAAAAGCTGATGGAAACTTCGAATACTACTACTATGG
TCAATACAGACGTAACTACTTTGTCCAATGCTCCAACGGATTAGCTTACT
GTCAACCATGCTTTCCTCTCTCTTTGGAATTCAGCGAAACATGCAACCAA
TGTCTTTACAGTAAACAtggtaagaatttttttcatcgaatatttattta
tttttttcaaaggggTGGAAAATtgcattaaaggttttatttttgcatAA
GTGCTCCCGTTTCGTATCAGACACagatttcatatcaggacagtttttgc
ctattgttatattgtgctgatataagcacatgtttttttctctttctgac
caatcttgctccacatccgtgtcaatccaatgtgaaaaagcttgtgaatt
aaaagtgacgagtaagcaaacgatattccttttatttaaaaacaaaacct
tgaaGAAATCTATTCTGAAATCTagcttttaattatcaagaaagAACTAT
CAGACAAATCTTTGATTAGATTTCAGATGATCTCGAGTATCTCGATAATC
TTTCCTCTTTCAGATAAATGCGTCACCACCGAAGCATGGGAACCAGCCAC
CACCTTCGAATGTCCAGACAAATGCCCACACCGTGGACCACACTTCAATG
GAAACATTGCTGACCCCAACAACCCACATCAATATGTTGCTTGTTGGCAT
GGAGCAACTGTCGGATGCATCGCTTGTCCAAAAGGATTATTGTTCAACGA
GAAATGGAACGCCTGTTTGTTTGATGGCAAATACAAGACCGAACCAGAAC
AAAGAAAT

Coding sequence (CDS) from alignment at scaffold_5:226583..227640+

>TCONS_00069423 ID=TCONS_00069423|Name=TCONS_00069423|organism=Clytia hemisphaerica|type=CDS|length=1539bp|location=Sequence derived from alignment at scaffold_5:226583..227640+ (Clytia hemisphaerica)
ATGAAAGTTTTCATCCTCCTTTCTGTCATCGTTGCATCATATGCTTTGGA
AGTCACCAAAGTGACTGGAACAACACCACCAGCTGTCCCATGCCCAGACT
CTCTCTGTAAAGGAAAAGCTGATGGAAACTTCGAATACTACTACTATGGT
CAATACAGACGTAACTACTTTGTCCAATGCTCCAACGGATTAGCTTACTG
TCAACCATGCTTTCCTCTCTCTTTGGAATTCAGCGAAACATGCAACCAAT
GTCTTTACAGTAAACAtgATAAATGCGTCACCACCGAAGCATGGGAACCA
GCCACCACCTTCGAATGTCCAGACAAATGCCCACACCGTGGACCACACTT
CAATGGAAACATTGCTGACCCCAACAACCCACATCAATATGTTGCTTGTT
GGCATGGAGCAACTGTCGGATGCATCGCTTGTCCAAAAGGATTATTGTTC
AACGAGAAATGGAACGCCTGTTTGTTTGATGGCAAATACAAGACCGAACC
AGAACAAAGAAATATGAAAGTTTTCATCCTCCTTTCTGTCATCGTTGCAT
CATATGCTTTGGAAGTCACCAAAGTGACTGGAACAACACCACCAGCTGTC
CCATGCCCAGACTCTCTCTGTAAAGGAAAAGCTGATGGAAACTTCGAATA
CTACTACTATGGTCAATACAGACGTAACTACTTTGTCCAATGCTCCAACG
GATTAGCTTACTGTCAACCATGCTTTCCTCTCTCTTTGGAATTCAGCGAA
ACATGCAACCAATGTCTTTACAGTAAACAtgATAAATGCGTCACCACCGA
AGCATGGGAACCAGCCACCACCTTCGAATGTCCAGACAAATGCCCACACC
GTGGACCACACTTCAATGGAAACATTGCTGACCCCAACAACCCACATCAA
TATGTTGCTTGTTGGCATGGAGCAACTGTCGGATGCATCGCTTGTCCAAA
AGGATTATTGTTCAACGAGAAATGGAACGCCTGTTTGTTTGATGGCAAAT
ACAAGACCGAACCAGAACAAAGAAATATGAAAGTTTTCATCCTCCTTTCT
GTCATCGTTGCATCATATGCTTTGGAAGTCACCAAAGTGACTGGAACAAC
ACCACCAGCTGTCCCATGCCCAGACTCTCTCTGTAAAGGAAAAGCTGATG
GAAACTTCGAATACTACTACTATGGTCAATACAGACGTAACTACTTTGTC
CAATGCTCCAACGGATTAGCTTACTGTCAACCATGCTTTCCTCTCTCTTT
GGAATTCAGCGAAACATGCAACCAATGTCTTTACAGTAAACAtgATAAAT
GCGTCACCACCGAAGCATGGGAACCAGCCACCACCTTCGAATGTCCAGAC
AAATGCCCACACCGTGGACCACACTTCAATGGAAACATTGCTGACCCCAA
CAACCCACATCAATATGTTGCTTGTTGGCATGGAGCAACTGTCGGATGCA
TCGCTTGTCCAAAAGGATTATTGTTCAACGAGAAATGGAACGCCTGTTTG
TTTGATGGCAAATACAAGACCGAACCAGAACAAAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043267XLOC_043267Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069423-proteinTCONS_00069423-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069423-exon-scaffold_5-1491911889:226583..226660TCONS_00069423-exon-scaffold_5-1491911889:226583..226660Clytia hemisphaericaexon
TCONS_00069423-exon-scaffold_5-1510915933:226583..226660TCONS_00069423-exon-scaffold_5-1510915933:226583..226660Clytia hemisphaericaexon
TCONS_00069423-exon-scaffold_5-1575043694:226583..226660TCONS_00069423-exon-scaffold_5-1575043694:226583..226660Clytia hemisphaericaexon
TCONS_00069423-exon-scaffold_5-1491911889:226768..227001TCONS_00069423-exon-scaffold_5-1491911889:226768..227001Clytia hemisphaericaexon
TCONS_00069423-exon-scaffold_5-1510915933:226768..227001TCONS_00069423-exon-scaffold_5-1510915933:226768..227001Clytia hemisphaericaexon
TCONS_00069423-exon-scaffold_5-1575043694:226768..227001TCONS_00069423-exon-scaffold_5-1575043694:226768..227001Clytia hemisphaericaexon
TCONS_00069423-exon-scaffold_5-1491911889:227396..227640TCONS_00069423-exon-scaffold_5-1491911889:227396..227640Clytia hemisphaericaexon
TCONS_00069423-exon-scaffold_5-1510915933:227396..227640TCONS_00069423-exon-scaffold_5-1510915933:227396..227640Clytia hemisphaericaexon
TCONS_00069423-exon-scaffold_5-1575043694:227396..227640TCONS_00069423-exon-scaffold_5-1575043694:227396..227640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:226583..227640 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.346291	0.339767	0.508362	0.109233	0	0	0	0.279478	0.210021	0.321311	0.289367	3.35078	14.1177	3.6077	0.0864707	0.0790557	0	0.226808	0.0985687	0	0.119055	0.107556	0	0	0	0	0	0.237643
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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