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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069421 ID=TCONS_00069421|Name=TCONS_00069421|organism=Clytia hemisphaerica|type=transcript|length=931bp AGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaaattt tttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGGTATT TTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATATGTTA TTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagattttca actttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATCTCGA TTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAGGATG AACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGTTGAT AAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGGAGAA TTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAACAGAG CCAATATCAATATCTATTACACACTGGTGATGTTAGATCCCGATGCACCG AGTAGAAAAGATCCTTCACAAAGAAGTTGGCTTCATTGGCTCATTGTAAA CATTCATAATACAACCCACCTACACCACCCAAAAACTCCGGTTTCCATCG CTACGTATTCCTTCTAATTGTTCagccaaagaaagaaaaagaatatcttC CAATCGTCAAGCGTGGAAAGTTCAACATCAATAAATACGCAACTAATCAT AGCTTGACAAATCTTGCGGGACTAAcatattttcaaactaaaaaagaaGA TAAACTCCAACTTCCAGCTAATGCAGATTGAGTGACAGAATAACAAATAT GATATTTTAGGAAGTATGTTAAAGACTTTCATTTGCAGTCGAAGAATTAT TTATaaagattatatttttatacataactatggtggcccataagtgccaa gtaattttttattgaaaaactcaaaaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_5:209619..213636+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069421 ID=TCONS_00069421|Name=TCONS_00069421|organism=Clytia hemisphaerica|type=transcript|length=4018bp|location=Sequence derived from alignment at scaffold_5:209619..213636+ (Clytia hemisphaerica) AGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaaattt
tttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGGTATT
TTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATATGTTA
TTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagattttca
actttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATCTCGA
TTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAGGATG
AACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGTTGAT
AAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGGAGAA
TTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAACAGAG
CCAATATCGTAAGCACATTTTTATAAAGCcctttgaagtcaaaaagattC
TATACACTAATGAAAGAATAAGAGAATAAGTCTAAATGAATAAATCAGAG
AAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNccccccccccccccgggatcgTTGCAAAGCAAAACACTCTCTAA
CCTTAATAATAATGGCATTTAGAATTTTTCGGTTCTCTAATGTAGTATGA
CGGCATTTGCAATTCTAACAGCCAACCCAAAGCTGCAATTCAGACTAATA
AATAAGCTGTCCTGTTTTGTTTTCAGAATATCTATTACACACTGGTGATG
TTAGATCCCGATGCACCGAGTAGAAAAGATCCTTCACAAAGAAGTTGGCT
TCATTGGCTCATTGTAAACATTCATGTAAGCAAAGTATCGAATGgaaata
attttgaattaaattaaattaaaatagctggaaaaaaattcaagaaaagt
tTTGGTAAATTTGGTAAACTTCTTATAATCAAGGCTACTCAGAACTAAAC
TTGTTATCAATGAATGGTCTAgtaattcatgatatacaccattgcaatgt
cttctgatattacatcatggacccaatagctgattggttgtaagtgacgt
aaaatcagtcaatacgtcacactttcaaccaatcagctattgggttcgtg
gaagacattgcaattctgcaatggtgcatatcatgaataccagATTCCAA
ACCTTTTTTCTAGAATGCAGACATTTCGACTGGATTTGAAGTCGTAGGTA
AAAACATTTTACTCCATTAAATCTTGGTTATCAAAAGTAAAAGGCAAACG
GAATAACGAGGGATAACGGATAAATTTCCTGATAATTTCCAAGTTGTTAA
AAAGAGTATGGCttgtagtgtggtcgtgttacaaaaatacagactgtttg
taggaaaaaataagatttagctgaaactttctccagaccttctctatagg
atgcttatatctcaggaaaaatcccctaaaatcccactggtggaacatct
cttttttgggcaatttcttttttccccaggcaaaatcctaagagcgaaat
tttttgaaaatttcaaacttatttccagacgaaagctctcgaaaaactat
atagaagacttttaaacggttatagccgATTTCCTTACATAACTCAAGAC
CCCACTATAATGATTTTGGAGGTATTCGAATCTCGTCAGAACATTCAAAT
GAAAACGCAAAACTTCCGTGGTCGAGTGAGGTGCAAGTTATCACATGTGG
ATGAAATATTTACttattatttatcttttttcagAATACAACCCACCTAC
ACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTTCTAATTGTTC
agccaaagaaagaaaaagaatatcttCCAATCGTCAAGCGTGGAAAGTTC
AACATCAATAAATACGCAACTAATCATAGCTTGACAAATCTTGCGGGACT
AAcatattttcaaactaaaaaagaaGATAAACTCCAACTTCCAGCTAATG
CAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAAGTATGTTAAA
GACTTTCATTTGCAGTCGAAGAATTATTTATaaagattatatttttatac
ataactatggtggcccataagtgccaagtaattttttcttgaaaaactca
aaaaaaaatttttttatacatgaaaataactttcattCTACAATTTAAAT
TGGCTctcatttcaaaatcaatttaaaagtaatttcgttttcaaaatggc
tttaaaaacaacttaaaataCGACCCAGCAAGGCCACACAAatgatttaa
attttgttttaattNNNNNNNNNNNNNNacactttcaaccaatcagctat
tgggttcgtggaagacattgcaattctgcaatggtgcatatcatgaatac
cagATTCCAAACCTTTTTTCTAGAATGCAGACATTTCGACTGGATTTGAA
GTCGTAGGTAAAAACATTTTACTCCATTAAATCTTGGTTATCAAAAGTAA
AAGGCAAACGGAATAACGAGGGATAACGGATAAATTTCCTGATAATTTCC
AAGTTGTTAAAAAGAGTATGGCttgtagtgtggtcgtgttacaaaaatac
agactgtttgtaggaaaaaataagatttagctgaaactttctccagacct
tctctataggatgcttatatctcaggaaaaatcccctaaaatcccactgg
tggaacatctcttttttgggcaatttcttttttccccaggcaaaatccta
agagcgaaattttttgaaaatttcaaacttatttccagacgaaagctctc
gaaaaactatatagaagacttttaaacggttatagccgATTTCCTTACAT
AACTCAAGACCCCACTATAATGATTTTGGAGGTATTCGAATCTCGTCAGA
ACATTCAAATGAAAACGCAAAACTTCCGTGGTCGAGTGAGGTGCAAGTTA
TCACATGTGGATGAAATATTTACttattatttatcttttttcagAATACA
ACCCACCTACACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTT
CTAATTGTTCagccaaagaaagaaaaagaatatcttCCAATCGTCAAGCG
TGGAAAGTTCAACATCAATAAATACGCAACTAATCATAGCTTGACAAATC
TTGCGGGACTAAcatattttcaaactaaaaaagaaGATAAACTCCAACTT
CCAGCTAATGCAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAA
GTATGTTAAAGACTTTCATTTGCAGTCGAAGAATTATTTATaaagattat
atttttatacataactatggtggcccataagtgccaagtaattttttatt
gaaaaactcaaaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00069421-exon-scaffold_5-1491911889:209619..210076 | TCONS_00069421-exon-scaffold_5-1491911889:209619..210076 | Clytia hemisphaerica | exon |
TCONS_00069421-exon-scaffold_5-1510915933:209619..210076 | TCONS_00069421-exon-scaffold_5-1510915933:209619..210076 | Clytia hemisphaerica | exon |
TCONS_00069421-exon-scaffold_5-1575043694:209619..210076 | TCONS_00069421-exon-scaffold_5-1575043694:209619..210076 | Clytia hemisphaerica | exon |
TCONS_00069421-exon-scaffold_5-1491911889:211045..211143 | TCONS_00069421-exon-scaffold_5-1491911889:211045..211143 | Clytia hemisphaerica | exon |
TCONS_00069421-exon-scaffold_5-1510915933:211045..211143 | TCONS_00069421-exon-scaffold_5-1510915933:211045..211143 | Clytia hemisphaerica | exon |
TCONS_00069421-exon-scaffold_5-1575043694:211045..211143 | TCONS_00069421-exon-scaffold_5-1575043694:211045..211143 | Clytia hemisphaerica | exon |
TCONS_00069421-exon-scaffold_5-1491911889:213263..213636 | TCONS_00069421-exon-scaffold_5-1491911889:213263..213636 | Clytia hemisphaerica | exon |
TCONS_00069421-exon-scaffold_5-1510915933:213263..213636 | TCONS_00069421-exon-scaffold_5-1510915933:213263..213636 | Clytia hemisphaerica | exon |
TCONS_00069421-exon-scaffold_5-1575043694:213263..213636 | TCONS_00069421-exon-scaffold_5-1575043694:213263..213636 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_5 | supercontig | scaffold_5:209619..213636 + |
Blast
The following BLAST results are available for this feature:
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