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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069419 ID=TCONS_00069419|Name=TCONS_00069419|organism=Clytia hemisphaerica|type=transcript|length=894bp
AGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaaattt
tttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGGTATT
TTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATATGTTA
TTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagattttca
actttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATCTCGA
TTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAGGATG
AACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGTTGAT
AAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGGAGAA
TTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAACAGAG
CCAATATCAATATCTATTACACACTGGTGATGTTAGATCCCGATGCACCG
AGTAGAAAAGATCCTTCACAAAGAAGTTGGCTTCATTGGCTCATTGTAAA
CATTCATAATACAACCCACCTACACCACCCAAAAACTCCGGTTTCCATCG
CTACGTATTCCTTCTAATTGTTCagccaaagaaagaaaaagaatatcttC
CAATCGTCAAGCGTGGAAAGTTCAACATCAATAAATACGCAACTAATCAT
AGCTTGACAAATCTTGCGGGACTAAcatattttcaaactaaaaaagaaGA
TAAACTCCAACTTCCAGCTAATGCAGATTGAGTGACAGAATAACAAATAT
GATATTTTAGGAAGTATGTTAAAGACTTTCATTTGCAGTCGAAGAATTAT
TTATaaagattatatttttatacataactatggtggcccataag Run BLAST on NCBI transcript from alignment at scaffold_5:209619..212389+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069419 ID=TCONS_00069419|Name=TCONS_00069419|organism=Clytia hemisphaerica|type=transcript|length=2771bp|location=Sequence derived from alignment at scaffold_5:209619..212389+ (Clytia hemisphaerica)
AGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaaattt
tttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGGTATT
TTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATATGTTA
TTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagattttca
actttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATCTCGA
TTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAGGATG
AACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGTTGAT
AAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGGAGAA
TTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAACAGAG
CCAATATCGTAAGCACATTTTTATAAAGCcctttgaagtcaaaaagattC
TATACACTAATGAAAGAATAAGAGAATAAGTCTAAATGAATAAATCAGAG
AAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNccccccccccccccgggatcgTTGCAAAGCAAAACACTCTCTAA
CCTTAATAATAATGGCATTTAGAATTTTTCGGTTCTCTAATGTAGTATGA
CGGCATTTGCAATTCTAACAGCCAACCCAAAGCTGCAATTCAGACTAATA
AATAAGCTGTCCTGTTTTGTTTTCAGAATATCTATTACACACTGGTGATG
TTAGATCCCGATGCACCGAGTAGAAAAGATCCTTCACAAAGAAGTTGGCT
TCATTGGCTCATTGTAAACATTCATGTAAGCAAAGTATCGAATGgaaata
attttgaattaaattaaattaaaatagctggaaaaaaattcaagaaaagt
tTTGGTAAATTTGGTAAACTTCTTATAATCAAGGCTACTCAGAACTAAAC
TTGTTATCAATGAATGGTCTAgtaattcatgatatacaccattgcaatgt
cttctgatattacatcatggacccaatagctgattggttgtaagtgacgt
aaaatcagtcaatacgtcacactttcaaccaatcagctattgggttcgtg
gaagacattgcaattctgcaatggtgcatatcatgaataccagATTCCAA
ACCTTTTTTCTAGAATGCAGACATTTCGACTGGATTTGAAGTCGTAGGTA
AAAACATTTTACTCCATTAAATCTTGGTTATCAAAAGTAAAAGGCAAACG
GAATAACGAGGGATAACGGATAAATTTCCTGATAATTTCCAAGTTGTTAA
AAAGAGTATGGCttgtagtgtggtcgtgttacaaaaatacagactgtttg
taggaaaaaataagatttagctgaaactttctccagaccttctctatagg
atgcttatatctcaggaaaaatcccctaaaatcccactggtggaacatct
cttttttgggcaatttcttttttccccaggcaaaatcctaagagcgaaat
tttttgaaaatttcaaacttatttccagacgaaagctctcgaaaaactat
atagaagacttttaaacggttatagccgATTTCCTTACATAACTCAAGAC
CCCACTATAATGATTTTGGAGGTATTCGAATCTCGTCAGAACATTCAAAT
GAAAACGCAAAACTTCCGTGGTCGAGTGAGGTGCAAGTTATCACATGTGG
ATGAAATATTTACttattatttatcttttttcagAATACAACCCACCTAC
ACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTTCTAATTGTTC
agccaaagaaagaaaaagaatatcttCCAATCGTCAAGCGTGGAAAGTTC
AACATCAATAAATACGCAACTAATCATAGCTTGACAAATCTTGCGGGACT
AAcatattttcaaactaaaaaagaaGATAAACTCCAACTTCCAGCTAATG
CAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAAGTATGTTAAA
GACTTTCATTTGCAGTCGAAGAATTATTTATaaagattatatttttatac
ataactatggtggcccataag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069419-exon-scaffold_5-1491911889:209619..210076 | TCONS_00069419-exon-scaffold_5-1491911889:209619..210076 | Clytia hemisphaerica | exon |
| TCONS_00069419-exon-scaffold_5-1510915933:209619..210076 | TCONS_00069419-exon-scaffold_5-1510915933:209619..210076 | Clytia hemisphaerica | exon |
| TCONS_00069419-exon-scaffold_5-1575043694:209619..210076 | TCONS_00069419-exon-scaffold_5-1575043694:209619..210076 | Clytia hemisphaerica | exon |
| TCONS_00069419-exon-scaffold_5-1491911889:211045..211143 | TCONS_00069419-exon-scaffold_5-1491911889:211045..211143 | Clytia hemisphaerica | exon |
| TCONS_00069419-exon-scaffold_5-1510915933:211045..211143 | TCONS_00069419-exon-scaffold_5-1510915933:211045..211143 | Clytia hemisphaerica | exon |
| TCONS_00069419-exon-scaffold_5-1575043694:211045..211143 | TCONS_00069419-exon-scaffold_5-1575043694:211045..211143 | Clytia hemisphaerica | exon |
| TCONS_00069419-exon-scaffold_5-1491911889:212053..212389 | TCONS_00069419-exon-scaffold_5-1491911889:212053..212389 | Clytia hemisphaerica | exon |
| TCONS_00069419-exon-scaffold_5-1510915933:212053..212389 | TCONS_00069419-exon-scaffold_5-1510915933:212053..212389 | Clytia hemisphaerica | exon |
| TCONS_00069419-exon-scaffold_5-1575043694:212053..212389 | TCONS_00069419-exon-scaffold_5-1575043694:212053..212389 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:209619..212389 + |
Blast
The following BLAST results are available for this feature:
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