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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069410 ID=TCONS_00069410|Name=TCONS_00069410|organism=Clytia hemisphaerica|type=transcript|length=1072bp
ACGTCTTTAGAATACCCAAACAAATATGGTagattcactttcgttttctc
agaaTTTTTCGATTTGTTCCATTTGTAATTGAGAGGTAGCATGAATAATC
AAACTCAAACTCTTCTTCAAGAATGTTTAGTTAGTACAGGTCATGTTGAA
TGCTGTGCAATTTTTCGAAGAAAAGATGTCCTACTGCGTGCAAACTCAAA
TGGCTTTACActCTCGATACAAGAAATGGAAGATCTCAGTAATACATTCT
CGAACTTATCTGAAACTCATAGCCGAGGAATACTTTTAAAAGACACAAAT
TACAAAGTCATTCGTGCCGACAAATATTCTATCTATGGAAAAAAGGGAAA
AGAAGGGCTTGTAATGATTCGCACTtcaattttgatcattttggcgTTAT
ACTCGGCTGATATGTACCCGAGCATTGTGGTAGAAGCTGTTGAAAAGTTA
GGTGACTATCTTCGCGAAAAGGGAAAGTGATGACCAATCAATCGAATAGA
AGATTCTCATGCTTTGGACGGTTGGACTACTCGATGTATGATTAGTCATA
ACTTTTCTGGAAAGAATGGCAGAACTATAGTCTCCGCTTTTTCATGATAC
CCTGTTTCAACTAAGAATTCGGTTATCTGGGTTTTTAGAAATCTTAGAAT
CTTCAACCCACGGGAAGTTAGGACCTTGGCGTCTATTTAGATTTAAAACA
TTCTGTTTTTTGGGCAACTAGGAGCAAATAATCAAATGTTACATATAGTA
TTTATTAAATTTAGCTGGTCTTACTAATGTATAATGTAGTTGTTTGAAAA
TGACACTACTAGTATTCTATAGTATAAGTGTACTTTCTGGTGTTTTATGA
GTTGCGTTATTTCCTTTTTAGGGGAGAAccATGCCGTTCTAAATCTTTAG
GCCTAGCATGCGTTCAGCCGATGGATTTAAAATGCCATTGTGAGAACCTT
AAACATTGTTCATAAtagtttgtatttatttttataaagtaaatTCCTTA
ATTTCACtgtaaattcttttattttaaagaaaCTCCTTTTCtatgaaaag
atattcaaattcaCTACGCAGC Run BLAST on NCBI protein sequence of TCONS_00069410-protein >TCONS_00069410-protein ID=TCONS_00069410-protein|Name=TCONS_00069410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MNNQTQTLLQECLVSTGHVECCAIFRRKDVLLRANSNGFTLSIQEMEDLS
NTFSNLSETHSRGILLKDTNYKVIRADKYSIYGKKGKEGLVMIRTSILII
LALYSADMYPSIVVEAVEKLGDYLREKGK Run BLAST on NCBI transcript from alignment at scaffold_5:48979..55650+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069410 ID=TCONS_00069410|Name=TCONS_00069410|organism=Clytia hemisphaerica|type=transcript|length=6672bp|location=Sequence derived from alignment at scaffold_5:48979..55650+ (Clytia hemisphaerica)
ACGTCTTTAGAATACCCAAACAAATATGGTagattcactttcgttttctc
agaaTTTTTCGATTTGTTCCATTTGTAATTGAGAGGTAGCATGAATAATC
AAACTCAAACTCTTCTTCAAGAATGTTTAGTTAGTACAGGTCATGTTGAA
TGCTGTGCAATTTTTCGAAGAAAAGATGTCCTACTGCGTGCAAACTCAAA
TGGCTTTACAGTAAGTGCTGCTGgctaaaattatgaaaatgaaaacagtc
CCATCTCCCCAGACCATGCAGACAGTGCTCTTTTTGAGGGACAGGGCAGA
TTTCGATCAAATTTAAATCTGAGGGGCAGAAAAGCTCAAACTTTTACCAT
ATTTTCaatgtattttgaaaaagtttttggcAATTTCAGGGGAGGgtttt
caattttccaaaattcctTGCCTCTTGGGGACAGCAGCTGGCCATGCCAT
TCAGTTTTCAGAGCATGCCATGTCATCGGTCATCATGACCGATGACATGG
GATGCTCTGAAAACTGATAAGTTCATTGTTGCATTTAACCATGGCATTCT
GTTATTCTTGAATATGATAGTAGTATGACAAAAACACTCTCCAAATGGac
gaaatggtgaaaataagaacatgttaataaaaaagaacatttttaggctt
ataaAACTCATAAAAAGAACACTTGAAGGCAATTTTGGATGTTATTATGA
AAAATGGGGCGTAACCATGAATATGAAAAATACGGTGATTGTcgcatttt
ctttttttacctgTTTTCATTGGTTTTTTTCTGTcgcgttttttttattt
gacccgtttttatttgatcaattttttttcgaaagcaTGCAGCGGTCAGT
GATTTTTAAACATCTATTTCCCAGGCATAGTCTTCCTGGAAAGTTTAATT
TgttggccaaaagtttcaaaaatcttattcctagaaatccAATTTGTCGA
GTAAAAGCTAcatctcctggaaaagggaaacaggcTCTTCGACTGCTTCT
GTTTTTTGAAGGGGAAGGTTTGTGGGGTTACCTTAaagtgtatatatttt
cgcggTTAATTTTAACCCAAAACCGTGTTTCATgagtactaattttcgcg
atcGTTACTTAATTTTTCGCatgtattaaattttgcgattcaATAAgttg
gatttttatttttaagtgttaaaaggaaaaaaagactgATTTGCTTAAAG
GAGATCTAACGGCAAAAGTTTCTTTATCCTTAATTTTTGACAGAGTACAG
GcctaattaaataaaaaacattgcaaaaagaACGAGTGCAAAATCTTTCA
TATTGATTGAATTATCATTGTTTAAAATATCTCTTTATTTAAAAGTAGAG
GGTTTCGTGACGTCAGCGCTGAACTTTCATTTCGATAGAGAAACTGTTTG
TAGACAAAAATTATGGAAAGAAGATgttttatagcaaaaaaaaatacctC
TGATTCTGATGTGTCTAACTCCGTTTCTTCATCAGTAGAATGGTTAAAAA
TGTctgagaaatcattttcttcaCTTGAAGATTCACTCGACGACATTTTG
CTCTGAATTTAGAAGTCTAAATGAATGTGCTAAATGattttatcaagaaa
tttttctttatataaaACTCACTAAAAgtttagagaaaaagagagaaaat
cttGTTTAACAAACAAGTTGTTCAGCAATGACGTCACACGCTTAAATCTT
TGAAGGGATATAATTTCCTATtgagttaaaatttttcaacataatATAGC
TCATTTTAATCCCCACAATATAAAGTttccataatttccaaaaaaatgga
GCAAAATTTTTGCCGTTAGATCTCCTTTAAAACATAATGTATATGATAGA
AAACTAGTACTTGCgtgtattttttttcgaaaatttaaacCTTAATAAAT
TTTGCAAAACTTAGCCAAAATAACTCACGAAATTAAGTACATgcgaaaat
atatacacttAAGGTATAACTAACCTTCAAGAAGCAGGTCTTGATTACTT
CCTTACTCAGAATCCAATTCAAAATGGCGCCTGGGATTTACTTTTGGTGT
TggtcaatttttaaattttttacaaattctcAGCATggctatctatctat
ctatctatctatatatttaagtagtAACAAAACATACATGTTCGTTCTCC
ctacatataaaaacatttaacaaaaaaatttaaatgaaaatgagttaaaa
taaaatgtttggttctttattcaaaaataatttatataaaaTTCCTAAAG
AAAAAGCTCATATCAAACCGAGGGTAAGTAGTAAAGTTGAGAATTAAAGG
CTGAGAATATTGACACAAAGCTTAACATAATGGCTTGGTGCTGAGAATAC
CAAAATGTGAAGGCAGGGCGGTATTGAATACTAGGAGTTGAAATTAAGTT
GAATCCACAAGCTGAAAATGTAAATTGGCGGTGATGAGAagttcaagtca
aaaaaataaattataaatgaGTTAAATAAATTAGATAAATAGctataaac
atttaaaatattttttatggttTCAGAGAGAAAGGCTTCAAAATGAGTGA
TGTAAGAAAGAGTAAGGTGAACAAAGgcaaagaatttaaaattagtGAGA
ATAAAAACATGGGTGGAGGCTAACCTAAACTTGCAACAAAATAGAAAGTT
TCATTAGcttcatgcaaaataaaaaggTAAGATAAATTAAATAattcgct
aaggcgaaattaataaataaaaatatatgtaaATAAATCACTAAAAGTTA
GAGATGCTAGAAATTATACTGGAAATTACTCCTTGTGTTAAGTAAGAGTT
AATTGGAAAAGGAAAGTCAGAAACTAGTCTGTCAAAATAAGacgaaattt
cgattttaaattcatttctattttcaatattcaataCTTCTTTTGGCAAC
TCATTCCACCATTTAACAGTTATGGGCAGAAAAGAATCTCTGTATGCTAT
TACTATTCCGTGTATTGGCTGGCATTTAACACTATCACGAACTTGTTTTG
GGAGAATGCTCTGTATTTCCAACTTTCCTGATCTTATGTCATGAAATACA
GCAACAGAATCAACTTTTCTTTGGTGTTCCAAAGTTTTCCATTTTAGATC
ATTCAACATTCTAGTAGGACTAGCATCCCACGACGAATTCGAGAAAACAA
AGCGGGCTCCTTTACGTTGGACCATTTCAATATTATCACATAAGGTTTGG
CTCGATACTGGGTTCCACACTGGAGATGCATAGGACAGGATAGGTCTAAC
ATATGTATTGAATGCTTTCGCTTTGATTTTACGTGAACAATTCCTCAGGT
TCCTTTGAAGAAAAGATCTCTTTGGCTTTCAAAGGAAAGTTCAAAGTTTT
AAATGTTGTTGATTTAGTCTATTGTAGCTCTGACTTACACCCACAGTGGT
AACTGCTCATATTCATTGACCTAAAGGCTACTAAAGTCTGTTTCGAAAGT
TGTATAAATTAAACATTGGTTTcactttgatgtttttattatttttggtt
attttggttcaaatataaacaaaattatTCCAGGTATGTTTTCTTATCGC
GATGTACTTGTTTCTATCTCATTGATGATAATCAATGCGTTTTTTCAGAA
TGATTATAACTTAGTGTGTACGAAATGTGTATCAGTGTTTCAACGTCAAA
AATGTTGATTCGAGCACCAAGAAGatgactaccttaaaggaagaaatttt
ggcggaaagaaaatttggcggatttggcggatttcactgaaatccgccaa
attaagttcccgccaaaatttcttttttccgccatccgccaaattaaatt
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNatttagttttttcgtccatccgccaaattaaattcc
ctctgaaaaaacttttttggccatccgccaaattaaattcccgccaaaat
ttcttcctttaaggtaatttAGTCTTCACTTGTATTGTGGGATACTTAGA
CGCTACAGTAGAATTAGAAAGAAAACgcgataaaaaaaagaaaacgggtc
aaaaaaagaaaacgagCTGTTCCTCCCTCACAGGAACCAATGTTCCACCT
CTGAGAATTCCTCTGAAATACAAAAGGTTTGTCATCCTAATATCGGAATT
CCGTGAAATTTTTGAACGATAAAGGCCCGATTCCCCTCTTTCACCAAccg
taccccccccccccaaaaaaaaaagtatatgaatCGAAGTAACCCCAACT
TGATCGAGTTCATTACATTTTGGTTCAGAATTTTGGTTAAGAAAGGTCAG
TaaatctttctaaaagcattttttcgattggttttacttttttaacagCA
TGTAAAGGTGGTGAAATTCTGGGAAGACTAAGTAGAAGtacacgcttttc
tttttatgagaatatcttctataagattATCaacgtgaaaattgaaaatt
gttaGACTTAATTTGAAACTTTGAGACATTATATTTTAGCTCCCAATGTG
CACTCAAAAGTctcaaactctcaaattgatcatttctcgtGTTTGTataa
aagtcaagtctaaaaatgtaagaatacgttaagattATTTCACCCTTAAT
TTTATTGGCGATTTCTTAaaaatacttgaccctcatccaaagtacactat
tcttacaAAGCGTAATAAGATAAATCCTTGCTTTTTTACccctcaaattt
ttttatagctCTCGATACAAGAAATGGAAGATCTCAGTAATACATTCTCG
AACTTATCTGAAACTCATAGCCGAGGAATACTTTTAAAAGACACAAATTA
CAAAGTCATTCGTGCCGACAAATATTCTATCTATGGAAAAAAGGTGAGCG
CATTGATAAGTTCTCCAAAATAAAAAGGTTGCGAGGCCCTTGCGTGGTCA
AGAATGTTGATAAATGATATGGTTTCTTTAGTAACTACTGACTTTGAATT
CTTGGCATCATCAAAAAGTAAACTATGTTTATTAATCAAGCACTTTACAC
ATTtgagaaatacaaaaaatttaatcaaattttacCGAAATTTAATAAAG
CAAATGGCGGAAATTAGTAATCTAATCTCTCGGGTAACtctaaaaaaaat
ctctttctgCCAAAATTCCTTTTCCTTTAAGGTGATTATTAATCTAACTT
CTATACACtatttcgaccgtagccacctaTTGCTGTGtgtgcgggcattt
tttgtctgttttaccaccctaaaaccgccccagtctttttttcgcgtctg
aagacaatagaaaagagtgtaaaaaaaggattggatcgagtttaagatgg
caaattaaataataaagtggcacgtgcctgaccacgcgactacggtcgaa
aaaatATATTGGTTGGTACACTTTTCCAAAAAGTTTGGAAATAAGATGAT
GAATCTTTACCTAGAAATTTCAGATTTATCACATGGTTTTACTTTATTTT
AAGGGAAAAGAAGGGCTTGTAATGATTCGCACTtcaattttgatcatttt
ggcgTTATACTCGGCTGATATGTACCCGAGCATTGTGGTAGAAGCTGTTG
AAAAGTTAGGTAAGTTGAGTTAGTTTATTGTATATTTGGCAATAGTTTCG
TACTTAAGACGCTAACCCTAACTAAACCTAACAGGGGGATCAGTAAAAAA
CCTTTTGAGTGCTTGAGAGTATAATATTGTTCAAGAGGTatcgaaaaatc
ttaaaatatcttttgaaatattacttttgaaaaatattgtctcGCGAAAA
TATCTGCtcacgaaaatttatccacttttgatgattttctgaaatttcga
cattaaaaaaagtttttttagtttttttgaaatagttttcGAACTTTTTA
GGTGACTATCTTCGCGAAAAGGGAAAGTGATGACCAATCAATCGAATAGA
AGATTCTCATGCTTTGGACGGTTGGACTACTCGATGTATGATTAGTCATA
ACTTTTCTGGAAAGAATGGCAGAACTATAGTCTCCGCTTTTTCATGATAC
CCTGTTTCAACTAAGAATTCGGTTATCTGGGTTTTTAGAAATCTTAGAAT
CTTCAACCCACGGGAAGTTAGGACCTTGGCGTCTATTTAGATTTAAAACA
TTCTGTTTTTTGGGCAACTAGGAGCAAATAATCAAATGTTACATATAGTA
TTTATTAAATTTAGCTGGTCTTACTAATGTATAATGTAGTTGTTTGAAAA
TGACACTACTAGTATTCTATAGTATAAGTGTACTTTCTGGTGTTTTATGA
GTTGCGTTATTTCCTTTTTAGGGGAGAAccATGCCGTTCTAAATCTTTAG
GCCTAGCATGCGTTCAGCCGATGGATTTAAAATGCCATTGTGAGAACCTT
AAACATTGTTCATAAtagtttgtatttatttttataaagtaaatTCCTTA
ATTTCACtgtaaattcttttattttaaagaaaCTCCTTTTCtatgaaaag
atattcaaattcaCTACGCAGC Coding sequence (CDS) from alignment at scaffold_5:48979..55650+ >TCONS_00069410 ID=TCONS_00069410|Name=TCONS_00069410|organism=Clytia hemisphaerica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_5:48979..55650+ (Clytia hemisphaerica)
ATGAATAATCAAACTCAAACTCTTCTTCAAGAATGTTTAGTTAGTACAGG
TCATGTTGAATGCTGTGCAATTTTTCGAAGAAAAGATGTCCTACTGCGTG
CAAACTCAAATGGCTTTACActCTCGATACAAGAAATGGAAGATCTCAGT
AATACATTCTCGAACTTATCTGAAACTCATAGCCGAGGAATACTTTTAAA
AGACACAAATTACAAAGTCATTCGTGCCGACAAATATTCTATCTATGGAA
AAAAGGGAAAAGAAGGGCTTGTAATGATTCGCACTtcaattttgatcatt
ttggcgTTATACTCGGCTGATATGTACCCGAGCATTGTGGTAGAAGCTGT
TGAAAAGTTAGGTGACTATCTTCGCGAAAAGGGAAAGTGAATGAATAATC
AAACTCAAACTCTTCTTCAAGAATGTTTAGTTAGTACAGGTCATGTTGAA
TGCTGTGCAATTTTTCGAAGAAAAGATGTCCTACTGCGTGCAAACTCAAA
TGGCTTTACActCTCGATACAAGAAATGGAAGATCTCAGTAATACATTCT
CGAACTTATCTGAAACTCATAGCCGAGGAATACTTTTAAAAGACACAAAT
TACAAAGTCATTCGTGCCGACAAATATTCTATCTATGGAAAAAAGGGAAA
AGAAGGGCTTGTAATGATTCGCACTtcaattttgatcattttggcgTTAT
ACTCGGCTGATATGTACCCGAGCATTGTGGTAGAAGCTGTTGAAAAGTTA
GGTGACTATCTTCGCGAAAAGGGAAAGTGAATGAATAATCAAACTCAAAC
TCTTCTTCAAGAATGTTTAGTTAGTACAGGTCATGTTGAATGCTGTGCAA
TTTTTCGAAGAAAAGATGTCCTACTGCGTGCAAACTCAAATGGCTTTACA
ctCTCGATACAAGAAATGGAAGATCTCAGTAATACATTCTCGAACTTATC
TGAAACTCATAGCCGAGGAATACTTTTAAAAGACACAAATTACAAAGTCA
TTCGTGCCGACAAATATTCTATCTATGGAAAAAAGGGAAAAGAAGGGCTT
GTAATGATTCGCACTtcaattttgatcattttggcgTTATACTCGGCTGA
TATGTACCCGAGCATTGTGGTAGAAGCTGTTGAAAAGTTAGGTGACTATC
TTCGCGAAAAGGGAAAGTGAATGAATAATCAAACTCAAACTCTTCTTCAA
GAATGTTTAGTTAGTACAGGTCATGTTGAATGCTGTGCAATTTTTCGAAG
AAAAGATGTCCTACTGCGTGCAAACTCAAATGGCTTTACActCTCGATAC
AAGAAATGGAAGATCTCAGTAATACATTCTCGAACTTATCTGAAACTCAT
AGCCGAGGAATACTTTTAAAAGACACAAATTACAAAGTCATTCGTGCCGA
CAAATATTCTATCTATGGAAAAAAGGGAAAAGAAGGGCTTGTAATGATTC
GCACTtcaattttgatcattttggcgTTATACTCGGCTGATATGTACCCG
AGCATTGTGGTAGAAGCTGTTGAAAAGTTAGGTGACTATCTTCGCGAAAA
GGGAAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069410-exon-scaffold_5-1491911889:48979..49188 | TCONS_00069410-exon-scaffold_5-1491911889:48979..49188 | Clytia hemisphaerica | exon |
| TCONS_00069410-exon-scaffold_5-1510915933:48979..49188 | TCONS_00069410-exon-scaffold_5-1510915933:48979..49188 | Clytia hemisphaerica | exon |
| TCONS_00069410-exon-scaffold_5-1575043694:48979..49188 | TCONS_00069410-exon-scaffold_5-1575043694:48979..49188 | Clytia hemisphaerica | exon |
| TCONS_00069410-exon-scaffold_5-1491911889:53887..54021 | TCONS_00069410-exon-scaffold_5-1491911889:53887..54021 | Clytia hemisphaerica | exon |
| TCONS_00069410-exon-scaffold_5-1510915933:53887..54021 | TCONS_00069410-exon-scaffold_5-1510915933:53887..54021 | Clytia hemisphaerica | exon |
| TCONS_00069410-exon-scaffold_5-1575043694:53887..54021 | TCONS_00069410-exon-scaffold_5-1575043694:53887..54021 | Clytia hemisphaerica | exon |
| TCONS_00069410-exon-scaffold_5-1491911889:54632..54737 | TCONS_00069410-exon-scaffold_5-1491911889:54632..54737 | Clytia hemisphaerica | exon |
| TCONS_00069410-exon-scaffold_5-1510915933:54632..54737 | TCONS_00069410-exon-scaffold_5-1510915933:54632..54737 | Clytia hemisphaerica | exon |
| TCONS_00069410-exon-scaffold_5-1575043694:54632..54737 | TCONS_00069410-exon-scaffold_5-1575043694:54632..54737 | Clytia hemisphaerica | exon |
| TCONS_00069410-exon-scaffold_5-1491911889:55030..55650 | TCONS_00069410-exon-scaffold_5-1491911889:55030..55650 | Clytia hemisphaerica | exon |
| TCONS_00069410-exon-scaffold_5-1510915933:55030..55650 | TCONS_00069410-exon-scaffold_5-1510915933:55030..55650 | Clytia hemisphaerica | exon |
| TCONS_00069410-exon-scaffold_5-1575043694:55030..55650 | TCONS_00069410-exon-scaffold_5-1575043694:55030..55650 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:48979..55650 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005455 | PFN |
Blast
BLAST of TCONS_00069410 vs. Swiss-Prot (Human)
Match: PROF4 (Profilin-4 OS=Homo sapiens GN=PFN4 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 7.195e-22 Identity = 44/114 (38.60%), Postives = 71/114 (62.28%), Query Frame = 1
Query: 136 TGHVECCAIFRRKDVLLRANSNGFTLSIQEMEDLSNTFS-NLSETHSRGILLKDTNYKVIRADKYSIYGKKGKEGLVMIRTSILIILALYSADMYPSIVVEAVEKLGDYLREKG 474
T HV+ A+ + ++ L S GF ++ ++ L N F+ N + G+ K +Y+ +RAD+YS+Y K G+V+++T + +++A Y+ MYPSI VEA E LGDYLR+KG
Sbjct: 15 TKHVDSAALIKIQERSLCVASPGFNVTPSDVRTLVNGFAKNPLQARREGLYFKGKDYRCVRADEYSLYAKNENTGVVVVKTHLYLLVATYTEGMYPSICVEATESLGDYLRKKG 128
The following BLAST results are available for this feature:
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