|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069395 ID=TCONS_00069395|Name=TCONS_00069395|organism=Clytia hemisphaerica|type=transcript|length=1751bp
GAAAGTTTGAATTTAGAAACATTGTGCTAGCTTGGTGATTGTGGTAAAAG
CTAAATCTTACTGAGAATTTGAACAATTAAAATTTGACTCATGAAAATTC
TCTTGATTACTTAAAATAGACTTCCAACTATTGACCTATACATTCAGTTT
TAGAACACTCGTGATcaccaagaaaaagaaaaaaagatgcACATTCTAAA
GGCTTTGCTGGTATTGTTCCATTTGCATAGTTTAAATTCATTAAATATCG
ATTCAAAAAATACTATAACATCGTTGCCCCATGACTTCTTTGATATAAGT
CATCATGTTGGAAAGTCAACAACTGTACTTGTAATTTTGTATTTGTTAGC
TCTACTTGGATTAGTTTTATTAGTGGTTGGACTCAAATGTTTCCGCCTGT
TTGTCTTTTCCAGTGGTATGGCATTTTACTGGTTTATCATCTTCAGTGCA
TTGTCTAGGTACACTAATCTGAAGGAAGAGAGTCACCAAGATACTCTCAT
CGTATCTTTCATGGTTTCCTTAGTTGGTGGTGGTTTCACCTTGTTTTTGT
ATGGATTTGAGAAATGCTTTTATTTGGTTTTCTATAAAACATGTTTGGCA
TTTGGAATATTTTCGTTTGCTATCGTTTTCTACACACCAGTTGGGGATTT
TGAATTATGGAATGGGAATTATGTATTTTATTCTATATTTACCTCGTTTG
CGTTCATATGTGGTATTGTATGTTTATTTATACCGAAAATGGCTTGCATA
TCAAGTTCAAGTTGATAGGTTCGTACACAATTATCATGCTGATATGTGAT
AAACTATTATCTCCAAGGGAAAATGCAGTATGTTATTTTAACAATTGTTA
ATCGTATGACTGTCCTAAAATGTGAGCTATGTCAATCGTACAATCAAGTA
GATTACATCCTGGTAGGTGCTTGGGGAGGACTTTTCATCCTCGGTTGCAC
TATTCAATATTTCACCAACAAGGGTCAGGACTTTCAAGAACTACGTTACA
AAGGATGTTTCAACTTTGGCGAAAAGAAACAAAcaagagaagaagaagaa
tgtACCCCTCTGCATGTAGATGACCAACTTGAACATTCTTTTGGTGGATA
TGGTGGTTTAGATAATAAGTCAGCATTTGAGCTGGTTCTTGAGTGCTATC
CGGAACACCTACATAGTTACCTCCGTCAACATTTATACGTCGAGTATTCT
TCTATAGAGTCATTATATCAGCAAATATCTGTGCAACACTCTTATCAATT
CACCGAAAACACAACAAACAATGATCAAAATGTTGACCATCTAGTTTTGA
ATAGTGAAGCCCAATCAGCTTTTTACAGCAAACCAACTGAAAGATATCCT
AAAATTGCATATTTAGGCTGATATATAATTTAGCCAGGAGTATATCCTAG
AGAAGCCTATTTTTATGTCAACAAAGAAAGATGGGAGAACCTTTTTTCAG
AGGcattatcaattttaatttacttcCACAGTTCAATTTCTGAGAATGAC
TTTGTACTTTTAtgctttttaaagaaaataggaGGCATTAGATATACTCT
GGGATACACTCTGGATATAGAATGTTATGTGTTGGTTCATAGGAAAAAGT
CTTGTAAAACCTAATTGCTATTTTGACAataattatttcttaaaatacag
tTTAGAAATGGAAAATGAGTGTTATGCAATCcatattttttaaggaaaaa
tattttctagacCCATCAGCATCACTTTTTTGGCAATAAACCTCACAAAT
T Run BLAST on NCBI protein sequence of TCONS_00069395-protein >TCONS_00069395-protein ID=TCONS_00069395-protein|Name=TCONS_00069395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MHILKALLVLFHLHSLNSLNIDSKNTITSLPHDFFDISHHVGKSTTVLVI
LYLLALLGLVLLVVGLKCFRLFVFSSGMAFYWFIIFSALSRYTNLKEESH
QDTLIVSFMVSLVGGGFTLFLYGFEKCFYLVFYKTCLAFGIFSFAIVFYT
PVGDFELWNGNYVFYSIFTSFAFICGIVCLFIPKMACISSSS Run BLAST on NCBI transcript from alignment at scaffold_498:392792..394542 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069395 ID=TCONS_00069395|Name=TCONS_00069395|organism=Clytia hemisphaerica|type=transcript|length=1751bp|location=Sequence derived from alignment at scaffold_498:392792..394542 (Clytia hemisphaerica)
AATTTGTGAGGTTTATTGCCAAAAAAGTGATGCTGATGGgtctagaaaat
atttttccttaaaaaatatgGATTGCATAACACTCATTTTCCATTTCTAA
actgtattttaagaaataattatTGTCAAAATAGCAATTAGGTTTTACAA
GACTTTTTCCTATGAACCAACACATAACATTCTATATCCAGAGTGTATCC
CAGAGTATATCTAATGCCtcctattttctttaaaaagcaTAAAAGTACAA
AGTCATTCTCAGAAATTGAACTGTGgaagtaaattaaaattgataatgCC
TCTGAAAAAAGGTTCTCCCATCTTTCTTTGTTGACATAAAAATAGGCTTC
TCTAGGATATACTCCTGGCTAAATTATATATCAGCCTAAATATGCAATTT
TAGGATATCTTTCAGTTGGTTTGCTGTAAAAAGCTGATTGGGCTTCACTA
TTCAAAACTAGATGGTCAACATTTTGATCATTGTTTGTTGTGTTTTCGGT
GAATTGATAAGAGTGTTGCACAGATATTTGCTGATATAATGACTCTATAG
AAGAATACTCGACGTATAAATGTTGACGGAGGTAACTATGTAGGTGTTCC
GGATAGCACTCAAGAACCAGCTCAAATGCTGACTTATTATCTAAACCACC
ATATCCACCAAAAGAATGTTCAAGTTGGTCATCTACATGCAGAGGGGTac
attcttcttcttctcttgTTTGTTTCTTTTCGCCAAAGTTGAAACATCCT
TTGTAACGTAGTTCTTGAAAGTCCTGACCCTTGTTGGTGAAATATTGAAT
AGTGCAACCGAGGATGAAAAGTCCTCCCCAAGCACCTACCAGGATGTAAT
CTACTTGATTGTACGATTGACATAGCTCACATTTTAGGACAGTCATACGA
TTAACAATTGTTAAAATAACATACTGCATTTTCCCTTGGAGATAATAGTT
TATCACATATCAGCATGATAATTGTGTACGAACCTATCAACTTGAACTTG
ATATGCAAGCCATTTTCGGTATAAATAAACATACAATACCACATATGAAC
GCAAACGAGGTAAATATAGAATAAAATACATAATTCCCATTCCATAATTC
AAAATCCCCAACTGGTGTGTAGAAAACGATAGCAAACGAAAATATTCCAA
ATGCCAAACATGTTTTATAGAAAACCAAATAAAAGCATTTCTCAAATCCA
TACAAAAACAAGGTGAAACCACCACCAACTAAGGAAACCATGAAAGATAC
GATGAGAGTATCTTGGTGACTCTCTTCCTTCAGATTAGTGTACCTAGACA
ATGCACTGAAGATGATAAACCAGTAAAATGCCATACCACTGGAAAAGACA
AACAGGCGGAAACATTTGAGTCCAACCACTAATAAAACTAATCCAAGTAG
AGCTAACAAATACAAAATTACAAGTACAGTTGTTGACTTTCCAACATGAT
GACTTATATCAAAGAAGTCATGGGGCAACGATGTTATAGTATTTTTTGAA
TCGATATTTAATGAATTTAAACTATGCAAATGGAACAATACCAGCAAAGC
CTTTAGAATGTgcatctttttttctttttcttggtgATCACGAGTGTTCT
AAAACTGAATGTATAGGTCAATAGTTGGAAGTCTATTTTAAGTAATCAAG
AGAATTTTCATGAGTCAAATTTTAATTGTTCAAATTCTCAGTAAGATTTA
GCTTTTACCACAATCACCAAGCTAGCACAATGTTTCTAAATTCAAACTTT
C Coding sequence (CDS) from alignment at scaffold_498:392792..394542 >TCONS_00069395 ID=TCONS_00069395|Name=TCONS_00069395|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_498:392792..394542 (Clytia hemisphaerica)
TCAACTTGAACTTGATATGCAAGCCATTTTCGGTATAAATAAACATACAA
TACCACATATGAACGCAAACGAGGTAAATATAGAATAAAATACATAATTC
CCATTCCATAATTCAAAATCCCCAACTGGTGTGTAGAAAACGATAGCAAA
CGAAAATATTCCAAATGCCAAACATGTTTTATAGAAAACCAAATAAAAGC
ATTTCTCAAATCCATACAAAAACAAGGTGAAACCACCACCAACTAAGGAA
ACCATGAAAGATACGATGAGAGTATCTTGGTGACTCTCTTCCTTCAGATT
AGTGTACCTAGACAATGCACTGAAGATGATAAACCAGTAAAATGCCATAC
CACTGGAAAAGACAAACAGGCGGAAACATTTGAGTCCAACCACTAATAAA
ACTAATCCAAGTAGAGCTAACAAATACAAAATTACAAGTACAGTTGTTGA
CTTTCCAACATGATGACTTATATCAAAGAAGTCATGGGGCAACGATGTTA
TAGTATTTTTTGAATCGATATTTAATGAATTTAAACTATGCAAATGGAAC
AATACCAGCAAAGCCTTTAGAATGTgcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069395-exon-scaffold_498-1491911889:392792..394542 | TCONS_00069395-exon-scaffold_498-1491911889:392792..394542 | Clytia hemisphaerica | exon |
| TCONS_00069395-exon-scaffold_498-1510915933:392792..394542 | TCONS_00069395-exon-scaffold_498-1510915933:392792..394542 | Clytia hemisphaerica | exon |
| TCONS_00069395-exon-scaffold_498-1575043694:392792..394542 | TCONS_00069395-exon-scaffold_498-1575043694:392792..394542 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:392792..394542 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025256 | DUF4203 |
Blast
The following BLAST results are available for this feature:
|
