TCONS_00069393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069393
Unique NameTCONS_00069393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069393 ID=TCONS_00069393|Name=TCONS_00069393|organism=Clytia hemisphaerica|type=transcript|length=448bp
cgcaattttttttgctaagaaCAGTAACGTTTCTGCAAGATCAGCATTTT
TTTCATATCAATCTGGCTTTAACTTTCCTAgaaatgggctattccaaaaa
tagTGTGTACCCCctatatgttgaggaggtgtgacgtccagggtgatTTG
GTTTTTCGAGTGTAAGAATCCAGGGTTAAAAGGAAGTGGAAGATCCAGGG
TGGTCGATAAAACTGAGTCAAAAATCCAGGATGGTccaaaaaatacgaaa
aaaattCTAGGAGctcttgaaaaattgaaaaaatccagAGGAGTcacctt
tcccaaaaaagacCTCCTCGACATAGGGAGTAAAATTTTTTCTGGTATAG
CCCAATGTGACTATTATTACTTTGCAGTTTCAATGTTGTTTCCAAAGACA
CGTATATTGAGAAACCAGAAAAATCCGTTCAGATCTATCAAAAGTGTG
Run BLAST on NCBI

transcript from alignment at scaffold_498:387630..388077

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069393 ID=TCONS_00069393|Name=TCONS_00069393|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at scaffold_498:387630..388077 (Clytia hemisphaerica)
CACACTTTTGATAGATCTGAACGGATTTTTCTGGTTTCTCAATATACGTG
TCTTTGGAAACAACATTGAAACTGCAAAGTAATAATAGTCACATTGGGCT
ATACCAGAAAAAATTTTACTCCCTATGTCGAGGAGgtcttttttgggaaa
ggtgACTCCTctggattttttcaatttttcaagagCTCCTAGaatttttt
tcgtattttttggACCATCCTGGATTTTTGACTCAGTTTTATCGACCACC
CTGGATCTTCCACTTCCTTTTAACCCTGGATTCTTACACTCGAAAAACCA
AatcaccctggacgtcacacctcctcaacatatagGGGGTACACActatt
tttggaatagcccatttcTAGGAAAGTTAAAGCCAGATTGATATGAAAAA
AATGCTGATCTTGCAGAAACGTTACTGttcttagcaaaaaaaattgcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043246XLOC_043246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069393-exon-scaffold_498-1491911889:387630..388077TCONS_00069393-exon-scaffold_498-1491911889:387630..388077Clytia hemisphaericaexon
TCONS_00069393-exon-scaffold_498-1510915933:387630..388077TCONS_00069393-exon-scaffold_498-1510915933:387630..388077Clytia hemisphaericaexon
TCONS_00069393-exon-scaffold_498-1575043694:387630..388077TCONS_00069393-exon-scaffold_498-1575043694:387630..388077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_498supercontigscaffold_498:387630..388077 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.144755	0.168074	0	0.800732	1.10731	0.572539	0.536004	0.12509	0.774718	0.75196	0.494309	0.0987244	0	0	0.452283	0.334306	0.114217	0.157798	0	0.717613	0.210016	1.36161	0.154738	0.478128	0.711197	1.01772	0.217228	0.659038	1.34291
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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