TCONS_00069385 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069385
Unique NameTCONS_00069385
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length823

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069385 ID=TCONS_00069385|Name=TCONS_00069385|organism=Clytia hemisphaerica|type=transcript|length=823bp
CATAATTTCCCGGGGAAACAGAgtaattttgcattaaaaaaCAACCGGTA
GAGTGGTTAATAAAAGTCCATATCACCAATAAATGTACCTGCGTTTTGAG
ACGATTGGTTATCTGTTAGCTGGTACAAATACATGTGAGCTTTCTCAAAA
TACGATAAgttttcttgttgttgttgttgttgttgttgttgttgttgttg
ctgttgtttaTTAGAAGACCCTTTTGCTGATGATANTATAAGGTTTAAAA
ATCTCTTTTAAAATTGCATTACAACAGAAATTGAAAtagaaactaaaaat
aaaactcTAATTAATTGAACTTTAAAAACCATCCTCAAGGGAAAAGTGAA
ACTTCAAAGTGAAAAAGTTCTTTACTGATATAATGACTGACGTCAAATGG
ACCTATCCAATCACTATTAACACGATCACGTTTCCCGACTGCTTTACGTA
GCACGATTTTACCCCAGTTTGATTCCTCACCCGGTATAATCCAATCCTTC
GCCGGCTCTTTCTTCTTTCGGTCACTAAtacagattttaaatttttgtgt
aaACGGCCAACTCATTTGGTCATCAAAGACACCTTTCATGATTCGAATTG
AAAAATAGACGTCACCGTGTAGTCGATCAATTCGAGCACGGAATTGAACT
CGGTATCCAGGTGTTTTTGTGTAGAAAACACTTCCGTGTTGTACGGGTTC
AGTAGCAGTTTCCATCTTAGTATGTCTCCGTATTGCCCACATGATCGGTG
CTTGAGATAAAACAGGGACTGTGATCAAATCATCTTtgttgacaaatttt
ggttgttcCAATCGGTCTCCTAA
Run BLAST on NCBI

protein sequence of TCONS_00069385-protein

>TCONS_00069385-protein ID=TCONS_00069385-protein|Name=TCONS_00069385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
LGDRLEQPKFVNKDDLITVPVLSQAPIMWAIRRHTKMETATEPVQHGSVF
YTKTPGYRVQFRARIDRLHGDVYFSIRIMKGVFDDQMSWPFTQKFKICIS
DRKKKEPAKDWIIPGEESNWGKIVLRKAVGKRDRVNSDWIGPFDVSHYIS
KELFHFEVSLFP
Run BLAST on NCBI

transcript from alignment at scaffold_498:180429..181251

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069385 ID=TCONS_00069385|Name=TCONS_00069385|organism=Clytia hemisphaerica|type=transcript|length=823bp|location=Sequence derived from alignment at scaffold_498:180429..181251 (Clytia hemisphaerica)
TTAGGAGACCGATTGgaacaaccaaaatttgtcaacaAAGATGATTTGAT
CACAGTCCCTGTTTTATCTCAAGCACCGATCATGTGGGCAATACGGAGAC
ATACTAAGATGGAAACTGCTACTGAACCCGTACAACACGGAAGTGTTTTC
TACACAAAAACACCTGGATACCGAGTTCAATTCCGTGCTCGAATTGATCG
ACTACACGGTGACGTCTATTTTTCAATTCGAATCATGAAAGGTGTCTTTG
ATGACCAAATGAGTTGGCCGTttacacaaaaatttaaaatctgtaTTAGT
GACCGAAAGAAGAAAGAGCCGGCGAAGGATTGGATTATACCGGGTGAGGA
ATCAAACTGGGGTAAAATCGTGCTACGTAAAGCAGTCGGGAAACGTGATC
GTGTTAATAGTGATTGGATAGGTCCATTTGACGTCAGTCATTATATCAGT
AAAGAACTTTTTCACTTTGAAGTTTCACTTTTCCCTTGAGGATGGTTTTT
AAAGTTCAATTAATTAgagttttatttttagtttctaTTTCAATTTCTGT
TGTAATGCAATTTTAAAAGAGATTTTTAAACCTTATANTATCATCAGCAA
AAGGGTCTTCTAAtaaacaacagcaacaacaacaacaacaacaacaacaa
caacaacaagaaaacTTATCGTATTTTGAGAAAGCTCACATGTATTTGTA
CCAGCTAACAGATAACCAATCGTCTCAAAACGCAGGTACATTTATTGGTG
ATATGGACTTTTATTAACCACTCTACCGGTTGttttttaatgcaaaatta
cTCTGTTTCCCCGGGAAATTATG

Coding sequence (CDS) from alignment at scaffold_498:180429..181251

>TCONS_00069385 ID=TCONS_00069385|Name=TCONS_00069385|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_498:180429..181251 (Clytia hemisphaerica)
TTAGGAGACCGATTGgaacaaccaaaatttgtcaacaAAGATGATTTGAT
CACAGTCCCTGTTTTATCTCAAGCACCGATCATGTGGGCAATACGGAGAC
ATACTAAGATGGAAACTGCTACTGAACCCGTACAACACGGAAGTGTTTTC
TACACAAAAACACCTGGATACCGAGTTCAATTCCGTGCTCGAATTGATCG
ACTACACGGTGACGTCTATTTTTCAATTCGAATCATGAAAGGTGTCTTTG
ATGACCAAATGAGTTGGCCGTttacacaaaaatttaaaatctgtaTTAGT
GACCGAAAGAAGAAAGAGCCGGCGAAGGATTGGATTATACCGGGTGAGGA
ATCAAACTGGGGTAAAATCGTGCTACGTAAAGCAGTCGGGAAACGTGATC
GTGTTAATAGTGATTGGATAGGTCCATTTGACGTCAGTCATTATATCAGT
AAAGAACTTTTTCACTTTGAAGTTTCACTTTTCCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043238XLOC_043238Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069385-exon-scaffold_498-1491911889:180429..181251TCONS_00069385-exon-scaffold_498-1491911889:180429..181251Clytia hemisphaericaexon
TCONS_00069385-exon-scaffold_498-1510915933:180429..181251TCONS_00069385-exon-scaffold_498-1510915933:180429..181251Clytia hemisphaericaexon
TCONS_00069385-exon-scaffold_498-1575043694:180429..181251TCONS_00069385-exon-scaffold_498-1575043694:180429..181251Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069385-proteinTCONS_00069385-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_498supercontigscaffold_498:180429..181251 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.0949	34.5189	27.278	22.5953	15.5064	12.3149	15.526	19.8903	12.3689	16.5778	20.6062	12.4682	14.6247	15.9661	17.8159	21.3474	14.3743	17.5343	7.25173	8.48688	12.5079	13.0933	42.5156	34.2469	30.2742	27.9633	12.4991	14.8611	26.7789	31.6699
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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