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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069379 ID=TCONS_00069379|Name=TCONS_00069379|organism=Clytia hemisphaerica|type=transcript|length=2031bp
CGAGGACTTCCCCGCACCCTCCAATTAAAATCTTCATTCGATTTGGCTTT
ATTCATCTCGTCTGCTCTTCTTTTCCATTCTTTGATTTGCTCTCTCTCCA
TTTTCGGTAAATCGTCGGTGATGCTCAATTTTACGTATTTCTCGTGCTGT
CTTAGTTCAGTCAACTTCTTCATGAAGCGGTACTTTATATGGCTGTCTTT
GAATGCGACTTTGATTGGGCGCACACCATTTGATTGTTTTCCAACTCGAG
AGACGAAGGTTGGTTGAGCTTTTACGTTGACGTCGTTCAAAAGTTCGTTC
ACGAAATCGatatcttctttattttctttttcaacgcACCCCGTGGATGA
TGATGTTTGCGTCTATCGATAGCTTTCTTTGGTCTTCGATTTGTTCTTCG
ACTTTCTCCCTTCTAAGTAACTGCTTCATGTTGTTTAGGTTCAACGAACC
ATTTACTTTTGCAGCGTCGGTAAAACTTCTTGGTTCTTTTGCCACTTGAA
CTTTCGAAATCTTAGCATTCACTGTCTCTTCAATTTTGGTGGATAGCTTC
TTTTCCAGGACGGAAAATTGGCTCTGGATTAGATCAGTTAActtgatttt
tatcttttaggTATTCCTGACATCTTGCCTGTAAGTCCTTGACCACGGTG
TTAAGTCTCTTTTCATTCTCACTTTTAACGGTGTATAATGCTTTCACATG
CATCAATTTCTTTATAGCTGTGTGTACAGCATTCTATTCTTTCTGCTTGA
TGATGGATTTTTATGCTGAGGTCTTTTGCCGGGGAACAACAAGTTATGCA
TTGGTATTTTCTGTAACCTTTATTCAAAAACACAGAGACCCCACTCGgca
tgtttttcatgattttcatgatttttgcaaatttggcatttttcatggtt
tttagCATGTTTTGGATCATTTTGGCATGTTTTTCAGAGAAACATTAGGg
aattttgtttatattgtcTATTCTCTGTCCTGATATTCAGATTCATTAAA
GATAGCTCAAAATAGCACTTTCAGCCCcccaaaattctaaaattttctca
ctTGCCCAACCTTGGTGGGCAACGTTAAATATTATCTTAAGTTTTCAATA
AATACCATTGACAGAAATGTTAAAACAAGGATGTGTCAGGTAGGGGGGAT
CCATCTTTTCCAATGCTTTATAGGGAGGTATTAGATTTCCCGAAAAAAAT
GGGGGggtttaagattttagggggggggtcaagGAAAAATTAGGGGGGGT
AACaacttttggtcaaaatatctatcatatttatattgatttagatattt
ggtaTGGGACAACTAAAAAACAAGTGTAGATAGCTAAATCTTTGCCTGCT
GCACCATGTTAAACtctttttttcatatattttcatatatatttttgata
caaatttcaatgttttcggTTTTGAATGACTGGTGGACTGCTGCTGTCAA
TAGCAcgggttcgaaattttttttaaataggggATACACATATacggggg
atgaaataaaaataagggGTTTAGatccctctgcacactatgtttTTCTC
TGTTCAAGCTCTACTTTATAAAACAAGTAGCCAATATTTGGAAGTTTTGT
CAAGACTACATGTCACTGAACCACCTCATTATTTTTCCAGGGTTTAGACA
GGTCCATGACCTCGGCAAAACACAGGGTTTTTTTAAAGCAccaattttta
aaatgtctcTTGCATTATAGCTTGTATTCTAGTGTCTGGATATAcatgat
ttttaaatatttctcctTTGGGGCCAACCTTGGTTTTTTCAGGAACAGGG
CTCCCTAAGCTAAAATTTGCCTTATGTATATTTTTCTGATTCTTTGTTAT
ATTGTTCCTACATTTCAATCAGTTATTTTCTATTTAGTTTTCCAcccttg
aaaagacactttttttgcATCTTGAAAATCATAAACTTTCCTATTgtcca
accatggtgggctacATTTTAAATTGCAGCCTTTGATTGATTAATAAATT
CCAAGTGAAATGATTTCTACTTATGTTTGTG Run BLAST on NCBI transcript from alignment at scaffold_498:87791..89821 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069379 ID=TCONS_00069379|Name=TCONS_00069379|organism=Clytia hemisphaerica|type=transcript|length=2031bp|location=Sequence derived from alignment at scaffold_498:87791..89821 (Clytia hemisphaerica)
CACAAACATAAGTAGAAATCATTTCACTTGGAATTTATTAATCAATCAAA
GGCTGCAATTTAAAATgtagcccaccatggttggacAATAGGAAAGTTTA
TGATTTTCAAGATgcaaaaaaagtgtcttttcaagggTGGAAAACTAAAT
AGAAAATAACTGATTGAAATGTAGGAACAATATAACAAAGAATCAGAAAA
ATATACATAAGGCAAATTTTAGCTTAGGGAGCCCTGTTCCTGAAAAAACC
AAGGTTGGCCCCAAaggagaaatatttaaaaatcatgTATATCCAGACAC
TAGAATACAAGCTATAATGCAAgagacattttaaaaattggTGCTTTAAA
AAAACCCTGTGTTTTGCCGAGGTCATGGACCTGTCTAAACCCTGGAAAAA
TAATGAGGTGGTTCAGTGACATGTAGTCTTGACAAAACTTCCAAATATTG
GCTACTTGTTTTATAAAGTAGAGCTTGAACAGAGAAaaacatagtgtgca
gagggatCTAAACcccttatttttatttcatcccccgtATATGTGTATcc
cctatttaaaaaaaatttcgaacccgTGCTATTGACAGCAGCAGTCCACC
AGTCATTCAAAAccgaaaacattgaaatttgtatcaaaaatatatatgaa
aatatatgaaaaaaagaGTTTAACATGGTGCAGCAGGCAAAGATTTAGCT
ATCTACACTTGTTTTTTAGTTGTCCCAtaccaaatatctaaatcaatata
aatatgatagatattttgaccaaaagttGTTACCCCCCCTAATTTTTCct
tgaccccccccctaaaatcttaaaccCCCCCATTTTTTTCGGGAAATCTA
ATACCTCCCTATAAAGCATTGGAAAAGATGGATCCCCCCTACCTGACACA
TCCTTGTTTTAACATTTCTGTCAATGGTATTTATTGAAAACTTAAGATAA
TATTTAACGTTGCCCACCAAGGTTGGGCAagtgagaaaattttagaattt
tgggGGGCTGAAAGTGCTATTTTGAGCTATCTTTAATGAATCTGAATATC
AGGACAGAGAATAgacaatataaacaaaattcCCTAATGTTTCTCTGAAA
AACATGCCAAAATGATCCAAAACATGctaaaaaccatgaaaaatgccaaa
tttgcaaaaatcatgaaaatcatgaaaaacatgcCGAGTGGGGTCTCTGT
GTTTTTGAATAAAGGTTACAGAAAATACCAATGCATAACTTGTTGTTCCC
CGGCAAAAGACCTCAGCATAAAAATCCATCATCAAGCAGAAAGAATAGAA
TGCTGTACACACAGCTATAAAGAAATTGATGCATGTGAAAGCATTATACA
CCGTTAAAAGTGAGAATGAAAAGAGACTTAACACCGTGGTCAAGGACTTA
CAGGCAAGATGTCAGGAATAcctaaaagataaaaatcaagTTAACTGATC
TAATCCAGAGCCAATTTTCCGTCCTGGAAAAGAAGCTATCCACCAAAATT
GAAGAGACAGTGAATGCTAAGATTTCGAAAGTTCAAGTGGCAAAAGAACC
AAGAAGTTTTACCGACGCTGCAAAAGTAAATGGTTCGTTGAACCTAAACA
ACATGAAGCAGTTACTTAGAAGGGAGAAAGTCGAAGAACAAATCGAAGAC
CAAAGAAAGCTATCGATAGACGCAAACATCATCATCCACGGGGTgcgttg
aaaaagaaaataaagaagatatCGATTTCGTGAACGAACTTTTGAACGAC
GTCAACGTAAAAGCTCAACCAACCTTCGTCTCTCGAGTTGGAAAACAATC
AAATGGTGTGCGCCCAATCAAAGTCGCATTCAAAGACAGCCATATAAAGT
ACCGCTTCATGAAGAAGTTGACTGAACTAAGACAGCACGAGAAATACGTA
AAATTGAGCATCACCGACGATTTACCGAAAATGGAGAGAGAGCAAATCAA
AGAATGGAAAAGAAGAGCAGACGAGATGAATAAAGCCAAATCGAATGAAG
ATTTTAATTGGAGGGTGCGGGGAAGTCCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069379-exon-scaffold_498-1491911889:87791..89821 | TCONS_00069379-exon-scaffold_498-1491911889:87791..89821 | Clytia hemisphaerica | exon |
| TCONS_00069379-exon-scaffold_498-1510915933:87791..89821 | TCONS_00069379-exon-scaffold_498-1510915933:87791..89821 | Clytia hemisphaerica | exon |
| TCONS_00069379-exon-scaffold_498-1575043694:87791..89821 | TCONS_00069379-exon-scaffold_498-1575043694:87791..89821 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:87791..89821 . |
Blast
The following BLAST results are available for this feature:
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