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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069373 ID=TCONS_00069373|Name=TCONS_00069373|organism=Clytia hemisphaerica|type=transcript|length=1565bp
TTTATAGGTAGgaatacaaattatattttttaagtaAACTATCGTACAAA
AGTCTTATAACAATAACGAGTataataatatatatatatacgcAATATAA
TATATAcgcaataaacaaaacaaaaattgatgatAATATACTATGCAGTT
ATACTTAGTGAGTTTAGTTTCTAGGATCGGTGGTTTCACATATTCAAGTc
tactacacgtttttcttttataagagcaaactatataagaacatagggcc
aaaatgttaaaaacaagttaagaacattttaaggcttgagGACTCAAAAG
CACCGAAATTCTTGAGAAAGTGGACAAAAATAGTCATAACattaggaaaa
taaaaacatgttaagaacatttttaggcttaaaactcaaaaagttaagat
ggcttcgaaaattttggatgttcttttaaaaaacgtgtagttgacAACAA
CTTATTATCACAAAGCTAAATCTACCTCTAAAATAAGGTTTCTAAGGCTT
AGTTTTCTGGAAAACACTCCGCTAAACAAAGAACAAAAGTTGTGCTAAGA
TAACCCTTCTTCAATATtgagaaaaaataatgataaatacGCAATATAAG
AAAGAAAGTAGTATAAAATGAACTAAAATNACGTATAAAGAGTTTTAGGA
ATgatataaatatatttttttgtgagTATACATACATTTTATTATACATA
AATTTATCTTTGTATTGCAAGAAAAATACAGTATTAGTTTTTGGGCAACA
AAGAATTACATTTTATTCTAAGCTCTCCGAATTTAAGAAATCTACGGAAA
TTAGGGCAGGGCTGGGTATGGGCATTATGGACAGGGCAATCTAGGCACTC
TTCCcagcaaatttttcatttataaagGCGTTACACAATTCCCATTCATA
CTTTTCTCCGCAATATATAAAATACGTAAAAAATCATATCGCCAAAAAGA
GCAAACTTGTCAAAAAGCAACATTTTCTGAACAATTGGGCGTAAAAAAAA
TGCATTCACCTTTGACGCCTCTCTCAATCACAAAAACGAGGCTTTCGGAT
ATCAAAAACCCCTACAATGAGCTCTCATAGCAAACGAACGATAAAACCAG
TTTACAGATCACGTGACAAGCGGGAGCAATCACGTGTTTTCTTTTGAACT
TATTGTTCCTTCCGTCGCCACAGTCCCCTCTGTATGAGCAGCCGGTTTTT
CATCATTTGCTTTTTCTTGAGTCTCTTCTCTCTCGTCGCTTACTTGACCT
TTGAcattcaaatcttcattttgatGGTTTTCTTTAATGTCTCCTTTTTC
GTCTTCATTATTTGCTTCTGACATTTCTTCAGAATTCGTTGTATTATCCG
CTGAGAAAACAACAGGtccattaaaatcaaaataaactaccaaaatcgaa
atattgtCCATTGATCGTTGCTTGATAGCCAAATCAACTAATTTGCCGGC
AGCCGAATCTCGAGTTCCTTCTTCCATACATTTCCGTACTAATTGTACAG
CGTCGAAAGGTTCCACTGTATCCCACAATCCATCGCACGCTAAGATTACA
AATTCCTCGTCACCT Run BLAST on NCBI transcript from alignment at scaffold_498:505032..506648- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069373 ID=TCONS_00069373|Name=TCONS_00069373|organism=Clytia hemisphaerica|type=transcript|length=1617bp|location=Sequence derived from alignment at scaffold_498:505032..506648- (Clytia hemisphaerica)
TTTATAGGTAGGAATACAAATTATATTTTTTAAGTAAACTATCGTACAAA
AGTCTTATAACAATAACGAGTATAATAATATATATATATACGCAATATAA
TATATACGCAATAAACAAAACAAAAATTGATGATAATATACTATGCAGTT
ATACTTAGTGAGTTTAGTTTCTAGGATCGGTGGTTTCACATATTCAAGTC
TACTACACGTTTTTCTTTTATAAGAGCAAACTATATAAGAACATAGGGCC
AAAATGTTAAAAACAAGTTAAGAACATTTTAAGGCTTGAGGACTCAAAAG
CACCGAAATTCTTGAGAAAGTGGACAAAAATAGTCATAACATTAGGAAAA
TAAAAACATGTTAAGAACATTTTTAGGCTTAAAACTCAAAAAGTTAAGAT
GGCTTCGAAAATTTTGGATGTTCTTTTAAAAAACGTGTAGTTGACAACAA
CTTATTATCACAAAGCTAAATCTACCTCTAAAATAAGGTTTCTAAGGCTT
AGTTTTCTGGAAAACACTCCGCTAAACAAAGAACAAAAGTTGTGCTAAGA
TAACCCTTCTTCAATATTGAGAAAAAATAATGATAAATACGCAATATAAG
AAAGAAAGTAGTATAAAATGAACTAAAATGGTATAAAGAGTTTTAGGAAT
GTTATAAATATATTTTTTGGTGAGTATACATNACGTATAAAGAGTTTTAG
GAATGATATAAATATATTTTTTTGTGAGTATACATACATTTTATTATACA
TAAATTTATCTTTGTATTGCAAGAAAAATACAGTATTAGTTTTTGGGCAA
CAAAGAATTACATTTTATTCTAAGCTCTCCGAATTTAAGAAATCTACGGA
AATTAGGGCAGGGCTGGGTATGGGCATTATGGACAGGGCAATCTAGGCAC
TCTTCCCAGCAAATTTTTCATTTATAAAGGCGTTACACAATTCCCATTCA
TACTTTTCTCCGCAATATATAAAATACGTAAAAAATCATATCGCCAAAAA
GAGCAAACTTGTCAAAAAGCAACATTTTCTGAACAATTGGGCGTAAAAAA
AATGCATTCACCTTTGACGCCTCTCTCAATCACAAAAACGAGGCTTTCGG
ATATCAAAAACCCCTACAATGAGCTCTCATAGCAAACGAACGATAAAACC
AGTTTACAGATCACGTGACAAGCGGGAGCAATCACGTGTTTTCTTTTGAA
CTTATTGTTCCTTCCGTCGCCACAGTCCCCTCTGTATGAGCAGCCGGTTT
TTCATCATTTGCTTTTTCTTGAGTCTCTTCTCTCTCGTCGCTTACTTGAC
CTTTGACATTCAAATCTTCATTTTGATGGTTTTCTTTAATGTCTCCTTTT
TCGTCTTCATTATTTGCTTCTGACATTTCTTCAGAATTCGTTGTATTATC
CGCTGAGAAAACAACAGGTCCATTAAAATCAAAATAAACTACCAAAATCG
AAATATTGTCCATTGATCGTTGCTTGATAGCCAAATCAACTAATTTGCCG
GCAGCCGAATCTCGAGTTCCTTCTTCCATACATTTCCGTACTAATTGTAC
AGCGTCGAAAGGTTCCACTGTATCCCACAATCCATCGCACGCTAAGATTA
CAAATTCCTCGTCACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069373-exon-scaffold_498-1575043694:506022..506648 | TCONS_00069373-exon-scaffold_498-1575043694:506022..506648 | Clytia hemisphaerica | exon |
| TCONS_00069373-exon-scaffold_498-1575043694:505032..505969 | TCONS_00069373-exon-scaffold_498-1575043694:505032..505969 | Clytia hemisphaerica | exon |
| TCONS_00069373-exon-scaffold_498-1510915933:506022..506648 | TCONS_00069373-exon-scaffold_498-1510915933:506022..506648 | Clytia hemisphaerica | exon |
| TCONS_00069373-exon-scaffold_498-1510915933:505032..505969 | TCONS_00069373-exon-scaffold_498-1510915933:505032..505969 | Clytia hemisphaerica | exon |
| TCONS_00069373-exon-scaffold_498-1491911889:506022..506648 | TCONS_00069373-exon-scaffold_498-1491911889:506022..506648 | Clytia hemisphaerica | exon |
| TCONS_00069373-exon-scaffold_498-1491911889:505032..505969 | TCONS_00069373-exon-scaffold_498-1491911889:505032..505969 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:505032..506648 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001932 | PPM-type_phosphatase_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
The following BLAST results are available for this feature:
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