|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069347 ID=TCONS_00069347|Name=TCONS_00069347|organism=Clytia hemisphaerica|type=transcript|length=1879bp
agtTTTTGTTCAGTATATGAAACAACAAAATGAATTATCAAACCAACACT
CGAGATTGTCAAGCCTGGAAAGATGAAGGTTTAGAAATGAGCACGACAAG
CAATGAGGCTGCAAAACTTTTAGATCATGCTATAGACCAGATGTTTTGTA
ATGTTGCAGATCCTGCAATGGGAGGTATGATTGGGACTGTAGATAAAATG
TTGGAAGCTGACCCTGATTTCTTCATGGCAAAAATTTTCTCTATCGGAGT
TCGAGGAAGCTGCTGTAGAAATAGTCCAACCATCGCTAAACTAGTCTCTG
AATTGGAATCCGTTGATGACTCAAAGCTTAACGAGCGAGAAAAATTACAT
CGTAAAGCCAGCATTGAATGGGCTACTGAGAAAAAAACAGATGCACTTCG
AACTTGGGAATATATTTTACTACAATATCCTAAAGATACCATTGcccttt
tattttcaatcaatgGATACATCTTTTCTGGTCAATCGAGGATGTTGAGA
GATTCCCTAGCTCGAACATTACCTTATTGGAGAGAATCAGATTTTCACTT
TGGATATCTTCAAGGCTATTACGCATTTGGATTGGAACAAAGCAACCAAT
TCGTTCAAGCTGAAAAAGCTGTCAAAAAGTCTTTGGAAATCAATCCTGAT
AATACTTGGGGCTTTCACGCCTATTCTCACATCTTTGACGCAACCTGTCG
TTCCCAGGAAGGAGTTGATTTCCTTGAAGAAAATGATACATTCTTGACTG
ATGATAACAGGCTAACTTGTCATCTTTTTTGGCATCAAACTGTCAATTTA
ACCGAACTTGGGCATTATGATCGAGCTTTGAAATTGTATGATGATAAAAT
TTTATCGTTTAAGAGGACTCCCAACGCGTACCATCTCAGTGATAGTGTAC
AAGTATTGCAACGTTTAGAATTCGAAGGTATCAACGTTGGTGACAGATGG
GAAGAAGTGTACTCTGTTTACAAACCAATGTACAAATCTCATGAGCTTGT
CTACGATGATATGCATTTGACAGCTGCAATGATTCGATCCAAGACAGGCC
GTGAAAGCAAATCTAATTTCTTCGAATCAATGGAAGAGCATCTTAATAAA
AGCCTAGATACAACTTATGGAGACGTTGGTAAACGCATTGGATTTCCTTT
CGCTAAAGGTATTGCTGCTTATTGTGAAGGCAATTTTGAGGAAGCTTCCA
ATCTCTTTATACCTGTTTACAAAGACATTTGGGAAATTGGTGGAAGCAAA
GCAACACAAGACATCTTTAATCAGTATGTTATCAATGCTTGTGTTCGATC
GCCTAATCAGTTTCACAAACGCATGGCTAGATCGTTATTACATGAGCGCA
AATTGTTTAGACCAGATTCGTTGCTTACTGATCGAGTACTGGCAAAGCTT
GACGCGTACCACTGATAATCtttaaaccaaaaatattggacaTCACAAAT
TATTTCGGTCAATCTTAACCAACAATAATATTTACTttagatttttatca
aattttatccCCATTTAACATTGTGGAGACCTCCTGGATTCTGGGGTTTT
GaggattttctgattttttaaaaCAGGTAGGGGTTTGGTTTATGCAGAAT
TTCAGGTGGGGATACCCCTATGTAGTTGGGGTGATATTTTTCAGGTGgtg
gttttcaaattttccatatTAGGATAGGACTGTTTGCTTTTGgacttttt
aatctttttttacaCAGAAAAATACAAAACGAAAGCCCAGAACACGTAAT
TCACGCCgaaagttcatttttttctccagttaTTTCCtctctaaaaagaa
aaagtttgaagtCCTCAGAAATTTTTACCAAAATCAGGTGAGGGCTCGAG
GATTTTACATAAATTTATTTACAATCTGG Run BLAST on NCBI transcript from alignment at scaffold_498:141834..145863- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069347 ID=TCONS_00069347|Name=TCONS_00069347|organism=Clytia hemisphaerica|type=transcript|length=4030bp|location=Sequence derived from alignment at scaffold_498:141834..145863- (Clytia hemisphaerica)
AGTTTTTGTTCAGTATATGAAACAACAAAATGAATTATCAAACCAACACT
CGAGATTGTCAAGCCTGGAAAGATGAAGGTTTAGAAATGAGCACGACAAG
CAATGAGGCTGCAAAACTTTTAGATCATGCTATAGACCAGATGTTTTGTA
ATGTTGCAGATCCTGCAATGGGAGGTATGATTGGGACTGTAGATAAAATG
TTGGAAGCTGACCCTGATTTCTTCATGGCAAAAATTTTCTCTATCGGTGA
GTGTTTTTATTTTTCATTTTCTCCAGGTCCAGTCCAACAATTTTCGAAAA
TCTGAAGACATTAATTTTGTCTTATATAATGGACAAAGAAAATGCACCGT
AACGGTCTATTTTTCACCTAAAATTACTTATTGATTTGATGGAATTTTCT
TTATTAAAAAATAGTAGCTTTAAAGAAGTCATTACAATGCGAAAAATCTA
CTTCACTTTACCCAGCGTCGAGCGGCGCTATTTCACAAGTATTTGTAAAA
AAGTGAATCTAGGCGTATTATCAACTTTTTGAAGCTTACTGATAGCGCAA
GATAATTCACTGGCATTGTCTGGTTTTCGAACGCGTAAGATTTCGTTATT
CTAAAACAAAACGTCAGATTTCATTTGTTCTTCTATTTTGAAGTCATTGC
ATTGTCAGGGTCAAAATTTTGTCCTTGGTGGGAAAAATACCCTCCATTCT
CAGCTCAATGGAAAATTGACTTTTATTTCCTCACCAGTGCACTCCAAAAC
CATCCCATTAGATTTGTTTTACCTTAGAACAATAGGATTTCTATGATCCG
CATTGAGATTTTAAAAGATTATGAGACAGGGGTGTCATTAGAATATGACA
TTCAAAATTATTCCCATCAAAGATTTCGGTTGGCCGGGATTGATAAACTG
TTTCGGGTTTTTATGAAGCTCAGAGTGATCAATGATCATGGGTGGTTTTA
GACCCTATCGAACTTATCAGATGAAGAGATTTGTAATTGTCGTTTCATTG
TTTTTTAACGAGCGTTGCGCTCCTTCCCATGTTTCCGACGTACTTGCTCT
ATTGTCTCAAATCCGCAAGTGGTGATACAGCCCAGGACCAATTTGATTAA
ATTAATGAATTCCTAAGTGGAATTTCACTCCCATTTAGGGTCACTTTATG
GCAAAGTTTTCAAAAACGAGTAGGGTTCATTCAAACCCAAGCGGAACACC
CCAATCGATCGGAAATGGTTGTCATTCGTAGAAATTTTAGCTATAAAACT
GAGTGATAAATTTTAGAGATTACTTTGATTTTTCTTATAAAACAATAGAT
AAACTACGCAGTTTTTATATGCAATTTCAGTTTACGGGTCTTCTTAGCAT
TTTAGCTAATTGTCTGAAAAATTTGCTATAACCACCCCTGATATTATGCT
ATTATATTTATGCTTATTGGGTCAAGGGCTATCATCTGCCATGGTTAGAT
TAAAAAGCCTTTGCTTTACGAGATAGTGAATAGCTAATTTTAGGATTCGA
GCCTTAGCAACCTGGTTCCTTATGAAAAATGTAAAACAAAAAAGAACAGT
TTCTTCCGGGTTGATCATCAGCAAAAACACCCCTGTCTTTCAGCCCCGGT
GGAACCTTTTTTCTCAGTGGGGATAAAAATTCCTGTTGAAATCCCAATGA
GGATAGAAAGGCTAAAAAATCTAGTAAGGATGATTTTCGAGTGCAGTTTT
TAAACATTCGATTTCGAGTTGGGTTGAAATGAAAGTCAATTATCCAGTGG
GGCTAAAATTCCAGGGTATTTTCCCCCGGGGACAAAACTTTGGCTAAATT
CCCCAGTGAGGATGAGGTCCCACACAGAGATTTGCAAAAACTGTCTTTTT
TTTCTGTTTCACATAAAAGATATCAAAAAAGTGTATAAATGTCAACGAAA
AATACGTTCTTATCATTTATTGTAGGAGTTCGAGGAAGCTGCTGTAGAAA
TAGTCCAACCATCGCTAAACTAGTCTCTGAATTGGAATCCGTTGATGACT
CAAAGCTTAACGAGCGAGAAAAATTACATCGTAAAGCCAGCATTGAATGG
GCTACTGAGAAAAAAACAGATGCACTTCGAACTTGGGAATATATTTTACT
ACAATATCCTAAAGATACCATTGCCCTTTTATTTTCAATCAATGGATACA
TCTTTTCTGGTCAATCGAGGATGTTGAGAGATTCCCTAGCTCGAACATTA
CCTTATTGGAGAGAATCAGATTTTCACTTTGGATATCTTCAAGGTGAGAA
AGGGGTGGCTTCAGGGGGTACCTGATTCCGCCATTCCGTCAAAAATTCAT
TTTTTCCCGATTTTTGAATTCCAACCGTTTTTGTTTTTCTTGCTAAATTC
CGTTTTTCCGAAATTTCGTCCAACTTTTTGTCAAATCCCACCACTCCACT
CAAAAACAGGCATAATTCTGCTCATCTGCATTCAAAGCATTTAATTCAAT
GTTAACACGGAAATCAGAAAAAAGCATTGACTTTGATATGATCTATTTGT
TAAACATCGAAATTGGTCTACTCAACTTGTTCCAAAATTGTGAGCTATTT
TGGTTTTGCCTAAAATGACTAGAACATCTTTTTATAAACATTTTAATGGA
CTGAGTGATTATGCTTGGTGATGAGTACTTCTTTATGTGTACCGAATCAT
CGAAGACAATATAGAAAGCTTTTACTAATCTGCTCTTGTACTTATCGTTT
TGTATTTCATCATAGGCTATTACGCATTTGGATTGGAACAAAGCAACCAA
TTCGTTCAAGCTGAAAAAGCTGTCAAAAAGTCTTTGGAAATCAATCCTGA
TAATACTTGGGGCTTTCACGCCTATTCTCACATCTTTGACGCAACCTGTC
GTTCCCAGGAAGGAGTTGATTTCCTTGAAGAAAATGATACATTCTTGACT
GATGATAACAGGCTAACTTGTCATCTTTTTTGGCATCAAACTGTCAATTT
AACCGAACTTGGGCATTATGATCGAGCTTTGAAATTGTATGATGATAAAA
TTTTATCGTTTAAGAGGACTCCCAACGCGTACCATCTCAGTGATAGTGTA
CAAGTATTGCAACGTTTAGAATTCGAAGGTATCAACGTTGGTGACAGATG
GGAAGAAGTGTACTCTGTTTACAAACCAATGTACAAATCTCATGAGCTTG
TCTACGATGATATGCATTTGACAGCTGCAATGATTCGATCCAAGACAGGC
CGTGAAAGCAAATCTAATTTCTTCGAATCAATGGAAGAGCATCTTAATAA
AAGCCTAGATACAACTTATGGAGACGTTGGTAAACGCATTGGATTTCCTT
TCGCTAAAGGTATTGCTGCTTATTGTGAAGGCAATTTTGAGGAAGCTTCC
AATCTCTTTATACCTGTTTACAAAGACATTTGGGAAATTGGTGGAAGCAA
AGCAACACAAGACATCTTTAATCAGTATGTTATCAATGCTTGTGTTCGAT
CGCCTAATCAGTTTCACAAACGCATGGCTAGATCGTTATTACATGAGCGC
AAATTGTTTAGACCAGATTCGTTGCTTACTGATCGAGTACTGGCAAAGCT
TGACGCGTACCACTGATAATCTTTAAACCAAAAATATTGGACATCACAAA
TTATTTCGGTCAATCTTAACCAACAATAATATTTACTTTAGATTTTTATC
AAATTTTATCCCCATTTAACATTGTGGAGACCTCCTGGATTCTGGGGTTT
TGAGGATTTTCTGATTTTTTAAAACAGGTAGGGGTTTGGTTTATGCAGAA
TTTCAGGTGGGGATACCCCTATGTAGTTGGGGTGATATTTTTCAGGTGGT
GGTTTTCAAATTTTCCATATTAGGATAGGACTGTTTGCTTTTGGACTTTT
TAATCTTTTTTTACACAGAAAAATACAAAACGAAAGCCCAGAACACGTAA
TTCACGCCGAAAGTTCATTTTTTTCTCCAGTTATTTCCTCTCTAAAAAGA
AAAAGTTTGAAGTCCTCAGAAATTTTTACCAAAATCAGGTGAGGGCTCGA
GGATTTTACATAAATTTATTTACAATCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069347-exon-scaffold_498-1575043694:145618..145863 | TCONS_00069347-exon-scaffold_498-1575043694:145618..145863 | Clytia hemisphaerica | exon |
| TCONS_00069347-exon-scaffold_498-1575043694:143621..143938 | TCONS_00069347-exon-scaffold_498-1575043694:143621..143938 | Clytia hemisphaerica | exon |
| TCONS_00069347-exon-scaffold_498-1575043694:141834..143148 | TCONS_00069347-exon-scaffold_498-1575043694:141834..143148 | Clytia hemisphaerica | exon |
| TCONS_00069347-exon-scaffold_498-1510915933:145618..145863 | TCONS_00069347-exon-scaffold_498-1510915933:145618..145863 | Clytia hemisphaerica | exon |
| TCONS_00069347-exon-scaffold_498-1510915933:143621..143938 | TCONS_00069347-exon-scaffold_498-1510915933:143621..143938 | Clytia hemisphaerica | exon |
| TCONS_00069347-exon-scaffold_498-1510915933:141834..143148 | TCONS_00069347-exon-scaffold_498-1510915933:141834..143148 | Clytia hemisphaerica | exon |
| TCONS_00069347-exon-scaffold_498-1491911889:145618..145863 | TCONS_00069347-exon-scaffold_498-1491911889:145618..145863 | Clytia hemisphaerica | exon |
| TCONS_00069347-exon-scaffold_498-1491911889:143621..143938 | TCONS_00069347-exon-scaffold_498-1491911889:143621..143938 | Clytia hemisphaerica | exon |
| TCONS_00069347-exon-scaffold_498-1491911889:141834..143148 | TCONS_00069347-exon-scaffold_498-1491911889:141834..143148 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:141834..145863 - |
Blast
BLAST of TCONS_00069347 vs. Swiss-Prot (Human)
Match: TTC38 (Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 9.619e-89 Identity = 154/467 (32.98%), Postives = 248/467 (53.10%), Query Frame = 3
Query: 30 MNYQTNTRDCQAWKDEGLEMSTTSNEAAKLLDHAIDQMFCNVADPAMGGMIGTVDKMLEADPDFFMAKIFSIGV----RGSCCRNSPTIAKLVSELESVDDSK-LNEREKLHRKASIEWATEKKTDALRTWEYILLQYPKDTIALLFSINGYIFSGQSRMLRDSLARTLPYWRESDFHFGYLQGYYAFGLEQSNQFVQAEKAVKKSLEINPDNTWGFHAYSHIFDATCRSQEGVDFLEENDTFLTDDNRLTCHLFWHQTVNLTELGHYDRALKLYDDKIL-SFKRTPNAYHLSDSVQVLQRLEFEGINVGDRWEEVYSVYKPMYKSHELVYDDMHLTAAMIRSKTGRESKSNFFESMEEHLNKSLDTTYGDVGKRIGFPFAKGIAAYCEGNFEEASNLFIPVYKDIWEIGGSKATQDIFNQYVINACVRSPNQFHKRMARSLLHERKLFRPDSLLTDRVLAKLDAYH 1412
M + RDCQAWKD L +STTSNEA KL D + Q D ++GG+ G + K+ ADP F M + G+ GS + + V + + ++ L RE+LH A +A A WE IL +P D +AL FS + Y + G +RDS+AR P+W Y++G Y+FGL ++N + QAEK K++L INP + W H +HI + ++G++F++ ++TF D + L CH +WH + L E G Y+ AL +YD IL S + + DS +L RL+ EG++VG RW++V V + + H L+++D H A + + + ++ ++ + + + + +G P + + +GN + L +P+ I ++GGS A +D+FNQ +I+A + + HK +ARSLL ER +P+S LT+R++ K H
Sbjct: 1 MAAASPLRDCQAWKDARLPLSTTSNEACKLFDATLTQYVKWTNDKSLGGIEGCLSKLKAADPTFVMGHAMATGLVLIGTGSSVKLDKELDLAVKTMVEISRTQPLTRREQLHVSAVETFANGNFPKACELWEQILQDHPTDMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHSETFWKDSDMLACHNYWHWALYLIEKGEYEAALTIYDTHILPSLQANDAMLDVVDSCSMLYRLQMEGVSVGQRWQDVLPVARKHSRDHILLFNDAHFLMASLGAHDPQTTQ-ELLTTLRDASESPGENCQHLLARDVGLPLCQALVEAEDGNPDRVLELLLPIRYRIVQLGGSNAQRDVFNQLLIHAALNCTSSVHKNVARSLLMERDALKPNSPLTERLIRKAATVH 466
The following BLAST results are available for this feature:
|
