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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069329 ID=TCONS_00069329|Name=TCONS_00069329|organism=Clytia hemisphaerica|type=transcript|length=290bp
aaacaattaAACAACACACTTTTAAAACGCAAAAAAGTGAGgcttctaac
tttttttttgaaaagctttcaaaatgaatgaaaagggttttaaattttaa
atgcaAGAATGTATAAATAATTGAATAAATTGTTGAAATGATGGTGTGGT
TTAGGATTATGGTTTTAAGCTTTCTTGCTTATATGGTGACGACCCAAGAG
CTACAAAAAGCACATTTTCAGATCGATCACGAAGCTGGACGTTTGAAAAT
CGAAGCCAGTAAAGATGAAGCTGATATTGATTTTGGAAAT Run BLAST on NCBI transcript from alignment at scaffold_498:107213..108715+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069329 ID=TCONS_00069329|Name=TCONS_00069329|organism=Clytia hemisphaerica|type=transcript|length=1503bp|location=Sequence derived from alignment at scaffold_498:107213..108715+ (Clytia hemisphaerica)
aaacaattaAACAACACACTTTTAAAACGCAAAAAAGTGAGgcttctaac
tttttttttgaaaagctttcaaaatgaatgaaaagggttttaaattttaa
atgcaAGAATGTATAAATAATTGAATAAATTGTTGAAATGATGGTGTGGT
TTAGGATTATGGTTTTAAGCTTTCTTGCTTATATGGTGACGACCCAAGAG
CTACAAAAAGCACATTTTCAGGTAATTAAAGTTTccttttttacaagttt
gtgcAATTCGGTTTTGGAACTATACCAATTTACAGGTCAACGGGGACATC
ATAAACGGACTGAAGCTTTCATAAAGTGACATTTGACTGAGCAATTTTGT
ATCATACGTATATTACAATAAAANCATCATAAACGGACTGAAGCTTTCAT
ATGGTGACATTTGACTGAGCAATTTTGTATCATACGCATATTACAATAAA
CTTTAACAATAGATGACGAAATCGCAACTGgaaaattttgagataaattt
acGTAATTTACTTTCTGACTGATAATGTGTGCGTTCTAATTTGCGTATTG
CttgattgaatttttgtttGACGACACAATAAGATGCAATTTTACATATA
GCATGATTACCCTCAAAATACATTCGATGACATTTATCACTATCAGAGAA
CATTTTGACATACTAAATCTCCCCTACATTTTGACTACTGCTGCATGATT
ACTGATCTATCGACGATTGACTGAAACCACTTCTACCGcatcaaaaaata
ataacaacacCAATGTATTGACCAACTGCAAGCTGCAGTATCATTACTGT
TGCATATATCACAAACTTTAAAAACTTATTTTACTGTTGCACGATTCATT
GACGTGAACTCTTGTCAAAGCACACGTTTTAGCCATTGTTCTCCGCCAAT
CTCGCACCCAGAGCTACTTGCatcacttttttgattttactgatagaCGT
GATCACCTTTCGTGAGTGCtgtcagaatcataaaaaagcgaattaaggga
ctgggttcgagtttggttCTGAACCTACACTATTTTCTATGAAAACGTAA
ATACACTCCATATGATGCATGATCATTTGATGATTTGGTGgaactaaaaa
aagaaaatccaaaGTGTTTTGAAATATAGCTTTGCATGACGTATAGAGTT
TTACAAACGACAAACGACAAACGACAAAACATGAAATCGCTTCAATCTCA
GTAAAACCAATCTTCAATCTGATGAATattatgaatatttttaaatactt
CCATCACAGCTGATTCACGATACTGCACGAACTTAACGAGACTGGATGTT
GCATGATTAATAGTCACGATAAAATAAGATACTCGACAAAACGCAAAAAC
AGAAACGTTTTCGACATGCTATTCTTGCTATCTGGATAGTTGAATCATAG
TTAAAAACCAACTTCTTCTGGTTTCATTTTACAGATCGATCACGAAGCTG
GACGTTTGAAAATCGAAGCCAGTAAAGATGAAGCTGATATTGATTTTGGA
AAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069329-exon-scaffold_498-1491911889:107213..107433 | TCONS_00069329-exon-scaffold_498-1491911889:107213..107433 | Clytia hemisphaerica | exon |
| TCONS_00069329-exon-scaffold_498-1510915933:107213..107433 | TCONS_00069329-exon-scaffold_498-1510915933:107213..107433 | Clytia hemisphaerica | exon |
| TCONS_00069329-exon-scaffold_498-1575043694:107213..107433 | TCONS_00069329-exon-scaffold_498-1575043694:107213..107433 | Clytia hemisphaerica | exon |
| TCONS_00069329-exon-scaffold_498-1491911889:108647..108715 | TCONS_00069329-exon-scaffold_498-1491911889:108647..108715 | Clytia hemisphaerica | exon |
| TCONS_00069329-exon-scaffold_498-1510915933:108647..108715 | TCONS_00069329-exon-scaffold_498-1510915933:108647..108715 | Clytia hemisphaerica | exon |
| TCONS_00069329-exon-scaffold_498-1575043694:108647..108715 | TCONS_00069329-exon-scaffold_498-1575043694:108647..108715 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:107213..108715 + |
Blast
The following BLAST results are available for this feature:
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