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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069324 ID=TCONS_00069324|Name=TCONS_00069324|organism=Clytia hemisphaerica|type=transcript|length=1041bp
GGTTAACTAACTACTATAATCTTTTCAGCTGacaaaacgacaaaaaacat
caaaaaatcaacctgaaaaCTCAAGtgaaatcaaaagaagaatGTCAAAC
ATGACGACAGAAGGACAAGCAGCTTTGAATTCAACAAGTATCACTATAAA
AGCATTCGGAATTATATTGTACACTATCGTAAGTGTCATACATGGCATAG
GATTGATATCACTGTGTTTCATCAAAACTTCGAAACGTCTAAGCCCTCAA
CAACGTTTATACCTCATCAATATATCAGTAATCGAGCTAGGTTTCTGCTT
CAGCGGTATAATCGTCCGCGCGTCACACCTAGCGGGCACAAACACGTTGA
ATTACTACATTGCTATAATGACAGGTTGTGGATTAGGTCTGTGGTATTTT
CTAGTGATGGTTTTGCTAACTGTTGATCGCTTTCTTGCTGTTTATCTAGA
CATTCATTACGACAGAAAATGGCCGTACTCGCGAAACAAAATACTTCTAG
CTTTGGTGTTTATCATTATAGTAAGTGTGACATTGTTTCTGTTTACAATT
AATCCGCATGCAGCCAATCTAGTTTATATTTTAGAGGTCTATGCATGGCC
TATCGCGCATGCGCTTTTGATAATTGTTGTTGGTTTCACGTACGGATATT
TGTGTCAGAAAATCCGGTTTTACCGTAAAGAAGCAAAGAGGCACCAAGAC
TCGTTAAAAAAGAATATGATAGAACGAGAAACAGAAGTCAGCGAACAGAA
CAATCACAAACTGACGGTAAATTATGACAACGAGTCGGAAAAATTATCAC
ATTTTAAAAGGATCTCGAACTCATTCCGACGTAGTAAACTGATATGTAGC
AATTTCAACAGAGCCAAGAAACGTTTTTATTTACCTAATCTATTGATCGC
TAGTTTCCTTTTATTTTGAACACTACCTGATCTGATTTATTTCGGTTGCC
GGCTGAATGGTGTTCCGCTTAAAGGGCGATCGATGCTGACTGATGGAATT
GTTTCGCTTGTTTATATTTTGGGATTGTTTGTGATGCGGTT Run BLAST on NCBI protein sequence of TCONS_00069324-protein >TCONS_00069324-protein ID=TCONS_00069324-protein|Name=TCONS_00069324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MSNMTTEGQAALNSTSITIKAFGIILYTIVSVIHGIGLISLCFIKTSKRL
SPQQRLYLINISVIELGFCFSGIIVRASHLAGTNTLNYYIAIMTGCGLGL
WYFLVMVLLTVDRFLAVYLDIHYDRKWPYSRNKILLALVFIIIVSVTLFL
FTINPHAANLVYILEVYAWPIAHALLIIVVGFTYGYLCQKIRFYRKEAKR
HQDSLKKNMIERETEVSEQNNHKLTVNYDNESEKLSHFKRISNSFRRSKL
ICSNFNRAKKRFYLPNLLIASFLLF Run BLAST on NCBI transcript from alignment at scaffold_497:112660..113700 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069324 ID=TCONS_00069324|Name=TCONS_00069324|organism=Clytia hemisphaerica|type=transcript|length=1041bp|location=Sequence derived from alignment at scaffold_497:112660..113700 (Clytia hemisphaerica)
AACCGCATCACAAACAATCCCAAAATATAAACAAGCGAAACAATTCCATC
AGTCAGCATCGATCGCCCTTTAAGCGGAACACCATTCAGCCGGCAACCGA
AATAAATCAGATCAGGTAGTGTTCAAAATAAAAGGAAACTAGCGATCAAT
AGATTAGGTAAATAAAAACGTTTCTTGGCTCTGTTGAAATTGCTACATAT
CAGTTTACTACGTCGGAATGAGTTCGAGATCCTTTTAAAATGTGATAATT
TTTCCGACTCGTTGTCATAATTTACCGTCAGTTTGTGATTGTTCTGTTCG
CTGACTTCTGTTTCTCGTTCTATCATATTCTTTTTTAACGAGTCTTGGTG
CCTCTTTGCTTCTTTACGGTAAAACCGGATTTTCTGACACAAATATCCGT
ACGTGAAACCAACAACAATTATCAAAAGCGCATGCGCGATAGGCCATGCA
TAGACCTCTAAAATATAAACTAGATTGGCTGCATGCGGATTAATTGTAAA
CAGAAACAATGTCACACTTACTATAATGATAAACACCAAAGCTAGAAGTA
TTTTGTTTCGCGAGTACGGCCATTTTCTGTCGTAATGAATGTCTAGATAA
ACAGCAAGAAAGCGATCAACAGTTAGCAAAACCATCACTAGAAAATACCA
CAGACCTAATCCACAACCTGTCATTATAGCAATGTAGTAATTCAACGTGT
TTGTGCCCGCTAGGTGTGACGCGCGGACGATTATACCGCTGAAGCAGAAA
CCTAGCTCGATTACTGATATATTGATGAGGTATAAACGTTGTTGAGGGCT
TAGACGTTTCGAAGTTTTGATGAAACACAGTGATATCAATCCTATGCCAT
GTATGACACTTACGATAGTGTACAATATAATTCCGAATGCTTTTATAGTG
ATACTTGTTGAATTCAAAGCTGCTTGTCCTTCTGTCGTCATGTTTGACat
tcttcttttgatttcaCTTGAGttttcaggttgattttttgatgtttttt
gtcgttttgtCAGCTGAAAAGATTATAGTAGTTAGTTAACC Coding sequence (CDS) from alignment at scaffold_497:112660..113700 >TCONS_00069324 ID=TCONS_00069324|Name=TCONS_00069324|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_497:112660..113700 (Clytia hemisphaerica)
TCAAAATAAAAGGAAACTAGCGATCAATAGATTAGGTAAATAAAAACGTT
TCTTGGCTCTGTTGAAATTGCTACATATCAGTTTACTACGTCGGAATGAG
TTCGAGATCCTTTTAAAATGTGATAATTTTTCCGACTCGTTGTCATAATT
TACCGTCAGTTTGTGATTGTTCTGTTCGCTGACTTCTGTTTCTCGTTCTA
TCATATTCTTTTTTAACGAGTCTTGGTGCCTCTTTGCTTCTTTACGGTAA
AACCGGATTTTCTGACACAAATATCCGTACGTGAAACCAACAACAATTAT
CAAAAGCGCATGCGCGATAGGCCATGCATAGACCTCTAAAATATAAACTA
GATTGGCTGCATGCGGATTAATTGTAAACAGAAACAATGTCACACTTACT
ATAATGATAAACACCAAAGCTAGAAGTATTTTGTTTCGCGAGTACGGCCA
TTTTCTGTCGTAATGAATGTCTAGATAAACAGCAAGAAAGCGATCAACAG
TTAGCAAAACCATCACTAGAAAATACCACAGACCTAATCCACAACCTGTC
ATTATAGCAATGTAGTAATTCAACGTGTTTGTGCCCGCTAGGTGTGACGC
GCGGACGATTATACCGCTGAAGCAGAAACCTAGCTCGATTACTGATATAT
TGATGAGGTATAAACGTTGTTGAGGGCTTAGACGTTTCGAAGTTTTGATG
AAACACAGTGATATCAATCCTATGCCATGTATGACACTTACGATAGTGTA
CAATATAATTCCGAATGCTTTTATAGTGATACTTGTTGAATTCAAAGCTG
CTTGTCCTTCTGTCGTCATGTTTGACat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069324-exon-scaffold_497-1491911889:112660..113700 | TCONS_00069324-exon-scaffold_497-1491911889:112660..113700 | Clytia hemisphaerica | exon |
| TCONS_00069324-exon-scaffold_497-1510915933:112660..113700 | TCONS_00069324-exon-scaffold_497-1510915933:112660..113700 | Clytia hemisphaerica | exon |
| TCONS_00069324-exon-scaffold_497-1575043694:112660..113700 | TCONS_00069324-exon-scaffold_497-1575043694:112660..113700 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_497 | supercontig | scaffold_497:112660..113700 . |
Blast
The following BLAST results are available for this feature:
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