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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069317 ID=TCONS_00069317|Name=TCONS_00069317|organism=Clytia hemisphaerica|type=transcript|length=1254bpRun BLAST on NCBI protein sequence of TCONS_00069317-protein >TCONS_00069317-protein ID=TCONS_00069317-protein|Name=TCONS_00069317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp MISLIYSFFQGARSYSRNKCNKAILLSQNSYNGFDFSGTLFIDTLSDDDFRun BLAST on NCBI transcript from alignment at scaffold_497:58435..75268+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069317 ID=TCONS_00069317|Name=TCONS_00069317|organism=Clytia hemisphaerica|type=transcript|length=16834bp|location=Sequence derived from alignment at scaffold_497:58435..75268+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_497:58435..75268+ >TCONS_00069317 ID=TCONS_00069317|Name=TCONS_00069317|organism=Clytia hemisphaerica|type=CDS|length=2955bp|location=Sequence derived from alignment at scaffold_497:58435..75268+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069317 vs. Swiss-Prot (Human)
Match: TSP3 (Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 3.526e-50 Identity = 78/177 (44.07%), Postives = 119/177 (67.23%), Query Frame = 3
Query: 723 NKAILLSQNSYNGFDFSGTLFIDTLSDDDFVDLAFSYQNNRNFYLFSWKQKQQAYWRSKPSFLSRARAGIELKHIHSTIGPSFDLRAAIWHTGNFTSQSTLLWRDEKNRGWQDKTSYFWQLLHRPMYGLIRLKVYKDLELMVDTGFLQNETLKGGKFGPYAFSQARMIWSNMKIECN 1253
+ + + ++NG DF GT ++T++DDD+ FSYQ++ FY+ WKQ +Q YW++ P F + A+ G++LK + S GP LR A+WHTG+ Q LLW D +N GW+DKTSY WQLLHRP G IR+K+Y+ +L+ D+G + + +++GG+ G + FSQ +IWSN++ CN
Sbjct: 762 DPGLAVGYTAFNGVDFEGTFHVNTVTDDDYAGFLFSYQDSGRFYVVMWKQTEQTYWQATP-FRAVAQPGLQLKAVTSVSGPGEHLRNALWHTGHTPDQVRLLWTDPRNVGWRDKTSYRWQLLHRPQVGYIRVKLYEGPQLVADSGVIIDTSMRGGRLGVFCFSQENIIWSNLQYRCN 937 HSP 2 Score: 100.138 bits (248), Expect = 1.945e-22 Identity = 75/130 (57.69%), Postives = 90/130 (69.23%), Query Frame = 2
Query: 107 KDNCMNTPNSGQSDMDSXXXXXXXXXXXXXXXIYNQVDNCPRHSNHDQSNSDNDKIGDACDNCLFTKNDHQQDVDGDGIGDACDEDMDGDGVMNLVDNRPKIVNIXXXXXXXXXXXXVCDNCPDVANPKQ 496
+DNC+ TPNSGQ D D+DG GD CD D D DGI N DNC N DQ NSD D GDACDNC N+ Q+D DG+G GDACD D+DGDG+ N +DN PK+ N + D D DG GD CD+CP+++NP Q
Sbjct: 480 QDNCLLTPNSGQEDADNDGVGDQCDDDADGDGIKNVEDNCRLFPNKDQQNSDTDSFGDACDNCPNVPNNDQKDTDGNGEGDACDNDVDGDGIPNGLDNCPKVPNPLQTDRDEDGVGDACDSCPEMSNPTQ 609 The following BLAST results are available for this feature:
BLAST of TCONS_00069317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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