TCONS_00069314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069314
Unique NameTCONS_00069314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069314 ID=TCONS_00069314|Name=TCONS_00069314|organism=Clytia hemisphaerica|type=transcript|length=499bp
CAACCAATTCACACAGCTCCACGCAATCATAACTCTAAGTCTAAATCGTA
ACATCAAAGTCAGGATTGACCTTTGACTTAATCAAGGTGCTGCGATTGGC
GAATAAAAGCAATTTGCGAGTATGTATGATGATATTGTCGTCTTCTTCAG
GAATATCTATATATTGTTGTGCAATTACCAGTGATTTTTGGCGTAATGTT
TCGGAAATAGCaggataaaatttatcaaaaaatgtcaaattgcGGGAATC
TCTGGTCCGGTTTGGATTTGATATATTTAAACCAGGCTAACAAGCCTTCA
GAAATGTGTCACTTGGTGGCTTTTGGTGATTGCGAGTTGTAACGTTTATA
TGCATCATCATTTGCTTGCAAACTAGTTGTCGTTATTTCATTGGGAATAT
CAATTCTAACATTTTACTTTGACATACTATACTTCAAATATACCGTGTGT
GCCACAAAGAAGTTACCCTTTTCGATTTAATATGACAAGCCATAGaaat
Run BLAST on NCBI

transcript from alignment at scaffold_496:699718..700216

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069314 ID=TCONS_00069314|Name=TCONS_00069314|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at scaffold_496:699718..700216 (Clytia hemisphaerica)
atttCTATGGCTTGTCATATTAAATCGAAAAGGGTAACTTCTTTGTGGCA
CACACGGTATATTTGAAGTATAGTATGTCAAAGTAAAATGTTAGAATTGA
TATTCCCAATGAAATAACGACAACTAGTTTGCAAGCAAATGATGATGCAT
ATAAACGTTACAACTCGCAATCACCAAAAGCCACCAAGTGACACATTTCT
GAAGGCTTGTTAGCCTGGTTTAAATATATCAAATCCAAACCGGACCAGAG
ATTCCCgcaatttgacattttttgataaattttatcctGCTATTTCCGAA
ACATTACGCCAAAAATCACTGGTAATTGCACAACAATATATAGATATTCC
TGAAGAAGACGACAATATCATCATACATACTCGCAAATTGCTTTTATTCG
CCAATCGCAGCACCTTGATTAAGTCAAAGGTCAATCCTGACTTTGATGTT
ACGATTTAGACTTAGAGTTATGATTGCGTGGAGCTGTGTGAATTGGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043192XLOC_043192Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069314-exon-scaffold_496-1491911889:699718..700216TCONS_00069314-exon-scaffold_496-1491911889:699718..700216Clytia hemisphaericaexon
TCONS_00069314-exon-scaffold_496-1510915933:699718..700216TCONS_00069314-exon-scaffold_496-1510915933:699718..700216Clytia hemisphaericaexon
TCONS_00069314-exon-scaffold_496-1575043694:699718..700216TCONS_00069314-exon-scaffold_496-1575043694:699718..700216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:699718..700216 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.59038	1.31228	0.969614	1.08413	0	0	0	0	0	0.127695	0	0.0814758	0.0813625	0	0.138934	0.0745487	0.183676	0.0941309	0	0	0.354847	0.173082	0.140269	0.127525	0	0	0.335497	0.179026	0.271569	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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