TCONS_00069313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069313
Unique NameTCONS_00069313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069313 ID=TCONS_00069313|Name=TCONS_00069313|organism=Clytia hemisphaerica|type=transcript|length=530bp
NNtgctgacacttgttgatgttgacacacttgaacttGCACTGCTTGAGG
TGAATACTGAGCTTGAAGATGGTGTAGATACAGAAGTACTAACATATGGA
GTACTGCTTGTAGCTTGACTTGATGAGCTAGCAATCGATGTcgatggagc
tggtttgcttgtagatggtgatggtgatgaaACTGAAGTAGTAACTGGTT
TGTATGTActgacacttgttgatgttgacacacttgaacttGCACTGCTT
GAGGTAAATGCTGAGCTCGATGAAGGTGTAGATACCGAGGAACTGACATA
TGGGCTTGATGTGCTCACAACTTGAGATTGAGTGCTTGCATATGTAGATT
CAGTGTAAGTTGTTTGGCTTGTACTTGAGCTTACTTGGCTTGATGAGCTA
GCTATCGATGTcgatggagctggtttgcttgtagatgatgatggtgattg
gacagaagtagtgactggtttgtatgtgctgacacttgttgatgttgaca
cacttgaacttGCACTGCTTGAGGTAAANN
Run BLAST on NCBI

protein sequence of TCONS_00069313-protein

>TCONS_00069313-protein ID=TCONS_00069313-protein|Name=TCONS_00069313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
FTSSSASSSVSTSTSVSTYKPVTTSVQSPSSSTSKPAPSTSIASSSSQVS
SSTSQTTYTESTYASTQSQVVSTSSPYVSSSVSTPSSSSAFTSSSASSSV
STSTSVSTYKPVTTSVSSPSPSTSKPAPSTSIASSSSQATSSTPYVSTSV
STPSSSSVFTSSSASSSVSTSTSVSX
Run BLAST on NCBI

transcript from alignment at scaffold_496:632093..632622

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069313 ID=TCONS_00069313|Name=TCONS_00069313|organism=Clytia hemisphaerica|type=transcript|length=530bp|location=Sequence derived from alignment at scaffold_496:632093..632622 (Clytia hemisphaerica)
NNTTTACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaacaagtgtc
agcacatacaaaccagtcactacttctgtccaatcaccatcatcatctac
aagcaaaccagctccatcgACATCGATAGCTAGCTCATCAAGCCAAGTAA
GCTCAAGTACAAGCCAAACAACTTACACTGAATCTACATATGCAAGCACT
CAATCTCAAGTTGTGAGCACATCAAGCCCATATGTCAGTTCCTCGGTATC
TACACCTTCATCGAGCTCAGCATTTACCTCAAGCAGTGCaagttcaagtg
tgtcaacatcaacaagtgtcagTACATACAAACCAGTTACTACTTCAGTt
tcatcaccatcaccatctacaagcaaaccagctccatcgACATCGATTGC
TAGCTCATCAAGTCAAGCTACAAGCAGTACTCCATATGTTAGTACTTCTG
TATCTACACCATCTTCAAGCTCAGTATTCACCTCAAGCAGTGCaagttca
agtgtgtcaacatcaacaagtgtcagcaNN

Coding sequence (CDS) from alignment at scaffold_496:632093..632622

>TCONS_00069313 ID=TCONS_00069313|Name=TCONS_00069313|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_496:632093..632622 (Clytia hemisphaerica)
TTTACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaacaagtgtcag
cacatacaaaccagtcactacttctgtccaatcaccatcatcatctacaa
gcaaaccagctccatcgACATCGATAGCTAGCTCATCAAGCCAAGTAAGC
TCAAGTACAAGCCAAACAACTTACACTGAATCTACATATGCAAGCACTCA
ATCTCAAGTTGTGAGCACATCAAGCCCATATGTCAGTTCCTCGGTATCTA
CACCTTCATCGAGCTCAGCATTTACCTCAAGCAGTGCaagttcaagtgtg
tcaacatcaacaagtgtcagTACATACAAACCAGTTACTACTTCAGTttc
atcaccatcaccatctacaagcaaaccagctccatcgACATCGATTGCTA
GCTCATCAAGTCAAGCTACAAGCAGTACTCCATATGTTAGTACTTCTGTA
TCTACACCATCTTCAAGCTCAGTATTCACCTCAAGCAGTGCaagttcaag
tgtgtcaacatcaacaagtgtcagcaNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043191XLOC_043191Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069313-exon-scaffold_496-1491911889:632093..632622TCONS_00069313-exon-scaffold_496-1491911889:632093..632622Clytia hemisphaericaexon
TCONS_00069313-exon-scaffold_496-1510915933:632093..632622TCONS_00069313-exon-scaffold_496-1510915933:632093..632622Clytia hemisphaericaexon
TCONS_00069313-exon-scaffold_496-1575043694:632093..632622TCONS_00069313-exon-scaffold_496-1575043694:632093..632622Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069313-proteinTCONS_00069313-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:632093..632622 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06176	0.2074	0.375418	0	21.0153	21.0112	122.624	207.126	246.825	304.517	472.627	431.661	23.2162	22.6157	3.23657	5.50428	25.3408	35.0423	108.187	161.677	79.3294	109.71	24.5045	46.7648	63.0046	59.4939	7.67789	4.29963	4.81281	3.26107
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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