TCONS_00069312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069312
Unique NameTCONS_00069312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069312 ID=TCONS_00069312|Name=TCONS_00069312|organism=Clytia hemisphaerica|type=transcript|length=741bp
ATATGAGCTTGATGTGCTCACAACTTGAGATTGAGTGCTTGCATATGTAG
ATTCAGTGTAAGTTGTTTGGCTTGTGCTTGAGCTTACTTGGCTTGATGAG
CTAGCAATCGATGTCGATGGAGCTGGTTTGCTTGTGGATGGTGATGGAGA
TTGGACTGAAGTAGTGACCGGTTTGtatgtgctgacacttgttgatTGTG
ACACACTTGAACTTGAACTGCTTGAGGTAAATACAGAGCTCGAAGATGGT
GTAGATACAGAAGTACTAACGTATGGAGTACTGCTGGTTGCTTGGCTTGA
TGAGCTTGCAAGCGAAGTTGATGGAGCTGGTTTGCTGgtagatggtgatg
gtgattggACAGAAGTAGTAACTGGTTTGtatgtgctgacacttgttgat
gttgacacacttgaacttGCACTGCTTGAGGTAAATGCTGAGCTCGATGA
AGGTGTAGATACAGAAGTACTAACGTATGGAGTACTGCTGGTTGCTTGGC
TTGATGAGCTTGCGATCGAAGTTgatggagctggtttgcttgtggatggt
gatggtgattggACGGAAGTAGTGACCGGTTTGtatgtgctgacacttgt
tgatgttgacacacttgaacttGCACTGCTTGAGGTAAATACAGAGCTCG
AAGATGGTGTAGATACAGAAGTACTAACGTATGGAGTACTGCTTGTAGCT
TGGCTTGATGAGCTTGCAATCGATGTCGATGGAGCTGGTTN
Run BLAST on NCBI

protein sequence of TCONS_00069312-protein

>TCONS_00069312-protein ID=TCONS_00069312-protein|Name=TCONS_00069312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
XPAPSTSIASSSSQATSSTPYVSTSVSTPSSSSVFTSSSASSSVSTSTSV
STYKPVTTSVQSPSPSTSKPAPSTSIASSSSQATSSTPYVSTSVSTPSSS
SAFTSSSASSSVSTSTSVSTYKPVTTSVQSPSPSTSKPAPSTSLASSSSQ
ATSSTPYVSTSVSTPSSSSVFTSSSSSSSVSQSTSVSTYKPVTTSVQSPS
PSTSKPAPSTSIASSSSQVSSSTSQTTYTESTYASTQSQVVSTSSSY
Run BLAST on NCBI

transcript from alignment at scaffold_496:627987..628727

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069312 ID=TCONS_00069312|Name=TCONS_00069312|organism=Clytia hemisphaerica|type=transcript|length=741bp|location=Sequence derived from alignment at scaffold_496:627987..628727 (Clytia hemisphaerica)
NAACCAGCTCCATCGACATCGATTGCAAGCTCATCAAGCCAAGCTACAAG
CAGTACTCCATACGTTAGTACTTCTGTATCTACACCATCTTCGAGCTCTG
TATTTACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaacaagtgtc
agcacataCAAACCGGTCACTACTTCCGTccaatcaccatcaccatccac
aagcaaaccagctccatcAACTTCGATCGCAAGCTCATCAAGCCAAGCAA
CCAGCAGTACTCCATACGTTAGTACTTCTGTATCTACACCTTCATCGAGC
TCAGCATTTACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaacaag
tgtcagcacataCAAACCAGTTACTACTTCTGTccaatcaccatcaccat
ctacCAGCAAACCAGCTCCATCAACTTCGCTTGCAAGCTCATCAAGCCAA
GCAACCAGCAGTACTCCATACGTTAGTACTTCTGTATCTACACCATCTTC
GAGCTCTGTATTTACCTCAAGCAGTTCAAGTTCAAGTGTGTCACAatcaa
caagtgtcagcacataCAAACCGGTCACTACTTCAGTCCAATCTCCATCA
CCATCCACAAGCAAACCAGCTCCATCGACATCGATTGCTAGCTCATCAAG
CCAAGTAAGCTCAAGCACAAGCCAAACAACTTACACTGAATCTACATATG
CAAGCACTCAATCTCAAGTTGTGAGCACATCAAGCTCATAT

Coding sequence (CDS) from alignment at scaffold_496:627987..628727

>TCONS_00069312 ID=TCONS_00069312|Name=TCONS_00069312|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_496:627987..628727 (Clytia hemisphaerica)
NAACCAGCTCCATCGACATCGATTGCAAGCTCATCAAGCCAAGCTACAAG
CAGTACTCCATACGTTAGTACTTCTGTATCTACACCATCTTCGAGCTCTG
TATTTACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaacaagtgtc
agcacataCAAACCGGTCACTACTTCCGTccaatcaccatcaccatccac
aagcaaaccagctccatcAACTTCGATCGCAAGCTCATCAAGCCAAGCAA
CCAGCAGTACTCCATACGTTAGTACTTCTGTATCTACACCTTCATCGAGC
TCAGCATTTACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaacaag
tgtcagcacataCAAACCAGTTACTACTTCTGTccaatcaccatcaccat
ctacCAGCAAACCAGCTCCATCAACTTCGCTTGCAAGCTCATCAAGCCAA
GCAACCAGCAGTACTCCATACGTTAGTACTTCTGTATCTACACCATCTTC
GAGCTCTGTATTTACCTCAAGCAGTTCAAGTTCAAGTGTGTCACAatcaa
caagtgtcagcacataCAAACCGGTCACTACTTCAGTCCAATCTCCATCA
CCATCCACAAGCAAACCAGCTCCATCGACATCGATTGCTAGCTCATCAAG
CCAAGTAAGCTCAAGCACAAGCCAAACAACTTACACTGAATCTACATATG
CAAGCACTCAATCTCAAGTTGTGAGCACATCAAGCTCATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043190XLOC_043190Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069312-exon-scaffold_496-1491911889:627987..628727TCONS_00069312-exon-scaffold_496-1491911889:627987..628727Clytia hemisphaericaexon
TCONS_00069312-exon-scaffold_496-1510915933:627987..628727TCONS_00069312-exon-scaffold_496-1510915933:627987..628727Clytia hemisphaericaexon
TCONS_00069312-exon-scaffold_496-1575043694:627987..628727TCONS_00069312-exon-scaffold_496-1575043694:627987..628727Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069312-proteinTCONS_00069312-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:627987..628727 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.463108	0.819951	0.465588	0.147744	5.79881	7.61598	39.5045	65.1007	93.0568	105.437	153.221	141.804	7.08933	5.39672	1.15389	2.50802	8.22076	12.0752	36.6246	56.4588	31.312	42.555	8.20909	16.2808	16.6751	18.8746	1.68328	1.79217	2.79587	2.52936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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