TCONS_00069307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069307
Unique NameTCONS_00069307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069307 ID=TCONS_00069307|Name=TCONS_00069307|organism=Clytia hemisphaerica|type=transcript|length=510bp
CTTTTCTCAAAGTGATTCCATCTTAATTCTCCAAACTATTTTTATTTGCT
ATCATCGGTAGCGGTTTTTTGTCAAACAGCATTAATAACACCGCAAAGGT
ATTCATGACCTGGAATTCTTTTAATTTGATAATTCACTTGGATTTATATA
CTTCTTGAAACTCGAAAAAATGTTTTGGAGACAAACTTTATTGCTTTAAA
TCGTATGAGGAGTTACAAAATATTTGGTTGTATTTTGCATTGAACTTTGA
TGATTGCTCCTTATCATCTCTAGGTTCTTTGTCGTTAGGTTTTTAGATTG
ATTTCACTTTGGCGCATGATTGTGGGTGCGTCGGACTAAATTTGTATGGC
CCAATTTTGGTAGATTACCAAGGGTGTTATCGCTTTCTCTCTTTATATAT
CCCTTTATACAAACCTCAGCAAACCTCCCTGTTTATACATTTTAAGGGCT
ATCGAAGTCACAGTGAGATGAATTCACTATAATGGTTTGCTTTCATACTA
TGAAATCGAA
Run BLAST on NCBI

transcript from alignment at scaffold_496:481500..482009

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069307 ID=TCONS_00069307|Name=TCONS_00069307|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at scaffold_496:481500..482009 (Clytia hemisphaerica)
TTCGATTTCATAGTATGAAAGCAAACCATTATAGTGAATTCATCTCACTG
TGACTTCGATAGCCCTTAAAATGTATAAACAGGGAGGTTTGCTGAGGTTT
GTATAAAGGGATATATAAAGAGAGAAAGCGATAACACCCTTGGTAATCTA
CCAAAATTGGGCCATACAAATTTAGTCCGACGCACCCACAATCATGCGCC
AAAGTGAAATCAATCTAAAAACCTAACGACAAAGAACCTAGAGATGATAA
GGAGCAATCATCAAAGTTCAATGCAAAATACAACCAAATATTTTGTAACT
CCTCATACGATTTAAAGCAATAAAGTTTGTCTCCAAAACATTTTTTCGAG
TTTCAAGAAGTATATAAATCCAAGTGAATTATCAAATTAAAAGAATTCCA
GGTCATGAATACCTTTGCGGTGTTATTAATGCTGTTTGACAAAAAACCGC
TACCGATGATAGCAAATAAAAATAGTTTGGAGAATTAAGATGGAATCACT
TTGAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043185XLOC_043185Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069307-exon-scaffold_496-1491911889:481500..482009TCONS_00069307-exon-scaffold_496-1491911889:481500..482009Clytia hemisphaericaexon
TCONS_00069307-exon-scaffold_496-1510915933:481500..482009TCONS_00069307-exon-scaffold_496-1510915933:481500..482009Clytia hemisphaericaexon
TCONS_00069307-exon-scaffold_496-1575043694:481500..482009TCONS_00069307-exon-scaffold_496-1575043694:481500..482009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:481500..482009 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.344814	0.800725	1.04451	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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