TCONS_00069303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069303
Unique NameTCONS_00069303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length771

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069303 ID=TCONS_00069303|Name=TCONS_00069303|organism=Clytia hemisphaerica|type=transcript|length=771bp
ACGCTGATGACGAAGGACGAGCAATGAGAGCAGGTCGTAGAGGATTCGGT
TATCTTGACCGAAAACgacaaaagaaagaagataaTGCTCTTCTCAGCAT
CATTGAAAAGTTGAAACCACAAGTGGTTGAGGAGGATACTGATGCTATTT
ATAGAGTTGTTTTGTCATCAAAAGCTGATAAATTCCAGTGGTTTATCAAT
AAAGTTGAGATCACAAGTTCTAATGAAAAATTTCATATCGAATCTTCGGA
TACGGAGCACAAACTGACCATCAGCAAATGTAGATTTGACGATGAAAAAT
CATCAATCAGGTTCAATGCTCAATTAGACACTGATGAAGTCTTTGGATCT
GTTAAACTGAAAGTACAACCAGCTACTTCAAACTTGAAACCATTTGGTGA
TATCAAAGATGTTTATTGTGTGGGCGATACTGCAACCTTTACTTTGTTGA
TCAGCGGCCATCCAGAGCCGTTTGAGGTTGATTGGTTCAAAGGATTTAAA
AGGATTGAAGAAGATGAAATTAAATATGAAGTTGACATTTCATCGAataa
agtatcgcttgttttaaAAGACCTTGATCCCTCAGATGCAGCCACATACA
AATGTCTTATCAAGAGCTCAACTGGAAAATCTGAGTATAAATATAACCCA
ATAAAGGTCAAGGAGaaacttgaatttgaaaagctgAAAGCTGCTTCAAA
AGATAGTGATACATCATCAAGAAGACAAGCTTCGTTTGAGAAGATCTTAG
ATGAAGAAGAAATTGTAGAGG
Run BLAST on NCBI

transcript from alignment at scaffold_496:421800..422570

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069303 ID=TCONS_00069303|Name=TCONS_00069303|organism=Clytia hemisphaerica|type=transcript|length=771bp|location=Sequence derived from alignment at scaffold_496:421800..422570 (Clytia hemisphaerica)
CCTCTACAATTTCTTCTTCATCTAAGATCTTCTCAAACGAAGCTTGTCTT
CTTGATGATGTATCACTATCTTTTGAAGCAGCTTTcagcttttcaaattc
aagtttCTCCTTGACCTTTATTGGGTTATATTTATACTCAGATTTTCCAG
TTGAGCTCTTGATAAGACATTTGTATGTGGCTGCATCTGAGGGATCAAGG
TCTTttaaaacaagcgatactttatTCGATGAAATGTCAACTTCATATTT
AATTTCATCTTCTTCAATCCTTTTAAATCCTTTGAACCAATCAACCTCAA
ACGGCTCTGGATGGCCGCTGATCAACAAAGTAAAGGTTGCAGTATCGCCC
ACACAATAAACATCTTTGATATCACCAAATGGTTTCAAGTTTGAAGTAGC
TGGTTGTACTTTCAGTTTAACAGATCCAAAGACTTCATCAGTGTCTAATT
GAGCATTGAACCTGATTGATGATTTTTCATCGTCAAATCTACATTTGCTG
ATGGTCAGTTTGTGCTCCGTATCCGAAGATTCGATATGAAATTTTTCATT
AGAACTTGTGATCTCAACTTTATTGATAAACCACTGGAATTTATCAGCTT
TTGATGACAAAACAACTCTATAAATAGCATCAGTATCCTCCTCAACCACT
TGTGGTTTCAACTTTTCAATGATGCTGAGAAGAGCAttatcttctttctt
ttgtcGTTTTCGGTCAAGATAACCGAATCCTCTACGACCTGCTCTCATTG
CTCGTCCTTCGTCATCAGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043184XLOC_043184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069303-exon-scaffold_496-1491911889:421800..422570TCONS_00069303-exon-scaffold_496-1491911889:421800..422570Clytia hemisphaericaexon
TCONS_00069303-exon-scaffold_496-1510915933:421800..422570TCONS_00069303-exon-scaffold_496-1510915933:421800..422570Clytia hemisphaericaexon
TCONS_00069303-exon-scaffold_496-1575043694:421800..422570TCONS_00069303-exon-scaffold_496-1575043694:421800..422570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:421800..422570 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0591619	0	0	0.0174948	0	0.0197599	0.0373741	0	0	0	0	0	0	0	0	0.392012	0	0	0.30701	0.70603	0	0.296236	0.35681	0.670833	0	0.056911	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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