TCONS_00069301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069301
Unique NameTCONS_00069301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length776

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069301 ID=TCONS_00069301|Name=TCONS_00069301|organism=Clytia hemisphaerica|type=transcript|length=776bp
gaaatactttctcAGATTCAATTACTGTGAAATGGAAGATACGAAAGCAA
GCATTAAATTTGTTGCTAAAATCAAAGACAAGGAACTCGCCAATTCTGTC
AAACTCAAAGTACAACCTGCAGCTCCAGGGTTGAAACCGCTTGGTGATGT
GAAGGAAGTTTATTGTGTTGGTGATACTGCAACGTTTACTTTACTGATAA
GTGGACATCCAGAGCCGTTTGAAATTGATTGGTTTAAAGGATTTAAAAAG
ATTGAGGAAGATGAGATCAAAtcagaaatccaaatttcaacAAATAAAGT
TTCATTCATCTTGAAATATTTGGATCCTTCCGATGCAGCAACATACAAAT
GTGTTATCAAAAGTTCAACTGGAAAATCTGAGTATAAGTATAATCCAATA
AAGGTCAAGGAGaaacttgaatttgaaaagctgAAAGCTGCTTCAAAAGA
TAGTGATACGTCATCAAGAAGACAAGCTTCGTTTGAAAAGATCTTAGATG
AAGAAGAAATTGTAGAGGAACCAAATGATCAAGATGTCCAAGAAACAGAG
GCTGAGATCACAGCTGAAGAAGCTGCTCTCCTAGAAGAAGGATTCGATTC
TTGGGCGAGTGATGATGACGTTGATGACGAAGGACGAGCAATGAAAGCAG
GTCGAAGAGGCTTTGGTTATCTTGACCGAAAGCGACCAAAGAAGGAAGAT
AATACTCTTCTCAAAACCATTGAAAAGTTGAAACCACAAGTCATTGAAGA
GGGTGATAACGCCACGTTCAAAGTAT
Run BLAST on NCBI

transcript from alignment at scaffold_496:418082..418857

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069301 ID=TCONS_00069301|Name=TCONS_00069301|organism=Clytia hemisphaerica|type=transcript|length=776bp|location=Sequence derived from alignment at scaffold_496:418082..418857 (Clytia hemisphaerica)
ATACTTTGAACGTGGCGTTATCACCCTCTTCAATGACTTGTGGTTTCAAC
TTTTCAATGGTTTTGAGAAGAGTATTATCTTCCTTCTTTGGTCGCTTTCG
GTCAAGATAACCAAAGCCTCTTCGACCTGCTTTCATTGCTCGTCCTTCGT
CATCAACGTCATCATCACTCGCCCAAGAATCGAATCCTTCTTCTAGGAGA
GCAGCTTCTTCAGCTGTGATCTCAGCCTCTGTTTCTTGGACATCTTGATC
ATTTGGTTCCTCTACAATTTCTTCTTCATCTAAGATCTTTTCAAACGAAG
CTTGTCTTCTTGATGACGTATCACTATCTTTTGAAGCAGCTTTcagcttt
tcaaattcaagtttCTCCTTGACCTTTATTGGATTATACTTATACTCAGA
TTTTCCAGTTGAACTTTTGATAACACATTTGTATGTTGCTGCATCGGAAG
GATCCAAATATTTCAAGATGAATGAAACTTTATTTgttgaaatttggatt
tctgaTTTGATCTCATCTTCCTCAATCTTTTTAAATCCTTTAAACCAATC
AATTTCAAACGGCTCTGGATGTCCACTTATCAGTAAAGTAAACGTTGCAG
TATCACCAACACAATAAACTTCCTTCACATCACCAAGCGGTTTCAACCCT
GGAGCTGCAGGTTGTACTTTGAGTTTGACAGAATTGGCGAGTTCCTTGTC
TTTGATTTTAGCAACAAATTTAATGCTTGCTTTCGTATCTTCCATTTCAC
AGTAATTGAATCTgagaaagtatttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043183XLOC_043183Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069301-exon-scaffold_496-1491911889:418082..418857TCONS_00069301-exon-scaffold_496-1491911889:418082..418857Clytia hemisphaericaexon
TCONS_00069301-exon-scaffold_496-1510915933:418082..418857TCONS_00069301-exon-scaffold_496-1510915933:418082..418857Clytia hemisphaericaexon
TCONS_00069301-exon-scaffold_496-1575043694:418082..418857TCONS_00069301-exon-scaffold_496-1575043694:418082..418857Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:418082..418857 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0610166	0	0.0496557	0	0.0207533	0	0	0	0	0.0633928	0	0.0982174	0	0	0.0220313	0.15616	0.360779	0	0.0549098	2.08686	1.45302	0.656898	0.819694	0.334036	1.12478	0	0	0.0401283	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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