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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069291 ID=TCONS_00069291|Name=TCONS_00069291|organism=Clytia hemisphaerica|type=transcript|length=3569bp
GCTTAGCGCCCGAGCGTGGAACAGTCACGTTGGTGGATAATAGAAATTTA
ATGAGATATATAGGAATCATGATGGAGGTTTAGTAGATATACGTATTTAG
GTTTTCGAGAAATTTCGGAGAAAATCGAATTGCAAATTTGCAGAGAAAAT
TAGTTGTACAGAATATGCGCAGTTCTGTACATGAAAATAGAAACACTGTT
TGGTATGATAAACAAGCTAAAAATAGAATTGATGAAAGTTGAACAAGATT
AGCTCATGACCAAACAGAATAACAGAAGAGTGTTGAGATTGTTTCACAGC
GATCcctttaatttttgtttatacACAGGCAAAGTTACTGAGTTTGTTGG
GCCAACCATGAAGTTTTTTGTGCAACAAGCGAATGATTGATTGTGAGTGA
ACAAAAATTAAAGTGAATGCTGAATAAGAGTATTTGAAATTAGTGGAGTA
GAATGACCTGAATCGACCTTCTTTGCGAAGTAGATTTCTTCTGGATAGGA
TTCAACTGaaattttcgttgttttttattGGTTATTtcgttgaaattttt
atttggaaaatttttttttacctggAGTTAttagttgttgttttttttgg
tgttgaCGAAATCTGATTGGTGGAATCGATACCAGCCCGTCAATCGGACA
CAGGGACTACACGGAAAAGAANAAAAACCCAAATTTACACACCTCTTTAA
CTCATAGCCACTGCGATTATAATAGGTTTTCCTGTCGGCCTGAGGAGAAG
CCAATGTCCATCATTATCTGGGGGAATGTCACCCATGATAGGGAAGCATT
TCATAGAATGGGTCGGTACAAAGCATACATTATAGGGGACTATGCCATCA
TCCCCACTCTCAAGATAGGTGGCGCTATTCAACACGCTGTAAAGGAAAAA
TATTACCAATTGGACAACGGGCTAATCCTTGAAAAAGCCACTAGGACGTA
TGAGAGCAACGCAAAAAGTAGGGGTGGTAGAGGGGCGCGAAGTTCGGATA
AGGCGCATGAGGGCCTAATAGTGACTGAGGATGGGAACGGCAAAATCATG
TGCAGTAGGGCATATGAACCGACTTTTACTTTTCCGTGTCCTATTAAAAt
cttaacaaaaattgaaaaagagaaaCGTGAAACCGAGGAATTTGAAAGAG
TGGCAGAGGAATACGCCAAGAAAAGCCGGGCCGATCATCAGTCACTGTTG
GAAGCTCATTTAGCCGCAACGGTAGATTTAACATTTTCCCACTTCAGGGC
AATATGGCATCAGATATGCCGAGTAAACAAacagttaaagaaaataaaga
attggGCAGTCAGGAATTTCCCTTCATCCACCCAGAGTTTGATGTCGGAC
AGTTCAGGGTTGGTGATGACCAGCATCGGTGATGCGGTAATGACATATAA
GTGCAAAAGGGTTAAGTCTTACATGGTGCACTGGGacagaaaaatcaaag
gaaaatgCTTTCAGCACTTTCCTGTCTACCTACGAAATGAGAATAAAACC
GTCTTCCTCAGGGTGGAGGATCGGAATCTCCTACCGAAATCACGACAAAT
AAATTGCACAAAAAGGGAAAAGCACACAGTTGTGATTTCTAAAAGTAAAA
GGGTATACCACATTGACCATAAAGGGAAAGTAGATATATTAAGGTCAAAA
TTGAGAGACCGAATTCGATTCCCCGATATGTTGAACCCTCCCAGAGGATT
CAACACAAAGATCGTCTTAGAGAACCCGGTTATACTAGATCAGCCTAGTC
TACTACAAATGATGGCAGAAAGTGAATTTACACTTGGAGAATTAGTTAAA
CTTCACCAAGGTGCGACCAAGTCAGGGTCAATAATTGAGGGAATCGGATT
GGGCCTCGCAAGCGTCCTAGAAGCTGCAGGTAATGCAGGGGACAAGGTAA
TATCTAGCTTAGGGACGGCATTGAAGGATACCTTCAATGGCGCCGGAAAT
GGAGGAGCAACCCTTGTCAAGGCAATAGGCGAGGGTACAGCAGATGTAAT
AGACAGTACAGGTACAGCGGTCAAGAATTCCTTAACGGGTGTCTCCTACG
TTTTTAAGGAGATATTCGGGGGTATTCCGGGTCTGCTCATCTGGGTCGTC
TTGCTGCCATTGGGGGGTTACATAATCTACCTAAGGGCCACGGGACAACT
TGGAAACTGCGTTTGTGCAGGGTGTAGACAGGGAGTGGATCTAACACCGG
AGAAGAAAACAGAAGCAGAAGTCCCTGAGAGGCCAGATTCCCCGATGACA
CTAGAAAAGAGGATGGCTGAACCTTTCCCAATGACTGAACCTTTCCCAAT
GGATGAACCATTCCCAATATATGCGACCATGAGCGGGCCCCCAAAAGAAG
CGACCGTAGAAACAACGGTCTTAAAAAGAAATAGGGACCACATAAAACGC
AGGCGACAAATAGATCACAGACGTCTTAACAAGGCGATCACGTACCTCGA
CGCCCAGACTCTTTTCACCGGAAAAGATACCTAGGTTTgcattaaaatat
ttagtaaTTTTTCTACCTTTCATAATACATTTTTAAATCATACATAAAAT
ACGAAACAAACAAGACGTCTACAACAAACCAGTTTATGGTAGTAGAATAG
CAACCAAACACTTAAAACACCCCGAGTAGATTAGCACACTGGTGGGTGTT
GATTAAGAAATTAGTGACCCCTAGAAAGGTCAATTGGAGAGCGGTCTATG
TCGAAAATTAAGGCCAGAAATTCTCATCGCGACGAAAATACAACTGTATT
TTGTATACTATCAAATCGaagaaacgttttttttctaTCATAATGGCACG
ACAAGGAGCAGTTTGGGAAGAGGTTTGTCCGTTCTTGGGAGGAAACGATT
TTTCAACTCTGTTTTCGAGTCCCGCTGGTTTAACAAGATTAATGGCTACA
TTCCGAAATAGAGTCCCACAGGACAACAGCGCTTGGGCCCCCGGGGGAGT
GGAAAACAAAATGTTTGAATTAACACTAAAACAACTTTTTTCAGTATCAT
ATTTACAGCTCGTCAACGAGCTACTGCTTCCTCTTTTAGCAAATAAGATA
GGAGTCACGGAAGCAGACGCAACGGTGGCAATCAATAGACTATGGTTTGA
GAGGGTTGAGGCAGCAGTTGGTCTAGGTCAAATTTACGATGAAAGACTGT
CCTCAACCCGCTTCCAAGGATATTTGGAGTCTGCGAAGCCTCCAATTATG
CGTTCCAGAGGAGAGAAACGCTCGTACAGAAAGATCCGTAAGTATGTCCG
CCGAGGATACGTCCGGAACCCCAAACGAAAGACGAGGAATTCAGGAGTAA
GTGATTAAATTTTATCTGATTTTTGTATGCGAACCTTTCGGAAGAAACTA
AAcaacaatttcaattttggttATAATTTTATTAGtgtaaacaagaaaaa
aagaaaaacattagtCTTCGCCTTCGGTTCACCAGGtgcctgaaaaaaaa
tgaagaaaaaagacagCATTAGTAAATACAGAACAATCATTGTCTATGAA
TGTATTAATAATCACAATTACTTGCAGTTTTCGAAGCAGAAAGGTAGACC
TACAGAAGGGACACAGAGG Run BLAST on NCBI protein sequence of TCONS_00069291-protein >TCONS_00069291-protein ID=TCONS_00069291-protein|Name=TCONS_00069291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=576bp
MSIIIWGNVTHDREAFHRMGRYKAYIIGDYAIIPTLKIGGAIQHAVKEKY
YQLDNGLILEKATRTYESNAKSRGGRGARSSDKAHEGLIVTEDGNGKIMC
SRAYEPTFTFPCPIKILTKIEKEKRETEEFERVAEEYAKKSRADHQSLLE
AHLAATVDLTFSHFRAIWHQICRVNKQLKKIKNWAVRNFPSSTQSLMSDS
SGLVMTSIGDAVMTYKCKRVKSYMVHWDRKIKGKCFQHFPVYLRNENKTV
FLRVEDRNLLPKSRQINCTKREKHTVVISKSKRVYHIDHKGKVDILRSKL
RDRIRFPDMLNPPRGFNTKIVLENPVILDQPSLLQMMAESEFTLGELVKL
HQGATKSGSIIEGIGLGLASVLEAAGNAGDKVISSLGTALKDTFNGAGNG
GATLVKAIGEGTADVIDSTGTAVKNSLTGVSYVFKEIFGGIPGLLIWVVL
LPLGGYIIYLRATGQLGNCVCAGCRQGVDLTPEKKTEAEVPERPDSPMTL
EKRMAEPFPMTEPFPMDEPFPIYATMSGPPKEATVETTVLKRNRDHIKRR
RQIDHRRLNKAITYLDAQTLFTGKDT Run BLAST on NCBI transcript from alignment at scaffold_496:129503..133071 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069291 ID=TCONS_00069291|Name=TCONS_00069291|organism=Clytia hemisphaerica|type=transcript|length=3569bp|location=Sequence derived from alignment at scaffold_496:129503..133071 (Clytia hemisphaerica)
CCTCTGTGTCCCTTCTGTAGGTCTACCTTTCTGCTTCGAAAACTGCAAGT
AATTGTGATTATTAATACATTCATAGACAATGATTGTTCTGTATTTACTA
ATGctgtcttttttcttcattttttttcaggcaCCTGGTGAACCGAAGGC
GAAGactaatgtttttctttttttcttgtttacaCTAATAAAATTATaac
caaaattgaaattgttgTTTAGTTTCTTCCGAAAGGTTCGCATACAAAAA
TCAGATAAAATTTAATCACTTACTCCTGAATTCCTCGTCTTTCGTTTGGG
GTTCCGGACGTATCCTCGGCGGACATACTTACGGATCTTTCTGTACGAGC
GTTTCTCTCCTCTGGAACGCATAATTGGAGGCTTCGCAGACTCCAAATAT
CCTTGGAAGCGGGTTGAGGACAGTCTTTCATCGTAAATTTGACCTAGACC
AACTGCTGCCTCAACCCTCTCAAACCATAGTCTATTGATTGCCACCGTTG
CGTCTGCTTCCGTGACTCCTATCTTATTTGCTAAAAGAGGAAGCAGTAGC
TCGTTGACGAGCTGTAAATATGATACTGAAAAAAGTTGTTTTAGTGTTAA
TTCAAACATTTTGTTTTCCACTCCCCCGGGGGCCCAAGCGCTGTTGTCCT
GTGGGACTCTATTTCGGAATGTAGCCATTAATCTTGTTAAACCAGCGGGA
CTCGAAAACAGAGTTGAAAAATCGTTTCCTCCCAAGAACGGACAAACCTC
TTCCCAAACTGCTCCTTGTCGTGCCATTATGAtagaaaaaaaacgtttct
tCGATTTGATAGTATACAAAATACAGTTGTATTTTCGTCGCGATGAGAAT
TTCTGGCCTTAATTTTCGACATAGACCGCTCTCCAATTGACCTTTCTAGG
GGTCACTAATTTCTTAATCAACACCCACCAGTGTGCTAATCTACTCGGGG
TGTTTTAAGTGTTTGGTTGCTATTCTACTACCATAAACTGGTTTGTTGTA
GACGTCTTGTTTGTTTCGTATTTTATGTATGATTTAAAAATGTATTATGA
AAGGTAGAAAAAttactaaatattttaatgcAAACCTAGGTATCTTTTCC
GGTGAAAAGAGTCTGGGCGTCGAGGTACGTGATCGCCTTGTTAAGACGTC
TGTGATCTATTTGTCGCCTGCGTTTTATGTGGTCCCTATTTCTTTTTAAG
ACCGTTGTTTCTACGGTCGCTTCTTTTGGGGGCCCGCTCATGGTCGCATA
TATTGGGAATGGTTCATCCATTGGGAAAGGTTCAGTCATTGGGAAAGGTT
CAGCCATCCTCTTTTCTAGTGTCATCGGGGAATCTGGCCTCTCAGGGACT
TCTGCTTCTGTTTTCTTCTCCGGTGTTAGATCCACTCCCTGTCTACACCC
TGCACAAACGCAGTTTCCAAGTTGTCCCGTGGCCCTTAGGTAGATTATGT
AACCCCCCAATGGCAGCAAGACGACCCAGATGAGCAGACCCGGAATACCC
CCGAATATCTCCTTAAAAACGTAGGAGACACCCGTTAAGGAATTCTTGAC
CGCTGTACCTGTACTGTCTATTACATCTGCTGTACCCTCGCCTATTGCCT
TGACAAGGGTTGCTCCTCCATTTCCGGCGCCATTGAAGGTATCCTTCAAT
GCCGTCCCTAAGCTAGATATTACCTTGTCCCCTGCATTACCTGCAGCTTC
TAGGACGCTTGCGAGGCCCAATCCGATTCCCTCAATTATTGACCCTGACT
TGGTCGCACCTTGGTGAAGTTTAACTAATTCTCCAAGTGTAAATTCACTT
TCTGCCATCATTTGTAGTAGACTAGGCTGATCTAGTATAACCGGGTTCTC
TAAGACGATCTTTGTGTTGAATCCTCTGGGAGGGTTCAACATATCGGGGA
ATCGAATTCGGTCTCTCAATTTTGACCTTAATATATCTACTTTCCCTTTA
TGGTCAATGTGGTATACCCTTTTACTTTTAGAAATCACAACTGTGTGCTT
TTCCCTTTTTGTGCAATTTATTTGTCGTGATTTCGGTAGGAGATTCCGAT
CCTCCACCCTGAGGAAGACGGTTTTATTCTCATTTCGTAGGTAGACAGGA
AAGTGCTGAAAGcattttcctttgatttttctgtCCCAGTGCACCATGTA
AGACTTAACCCTTTTGCACTTATATGTCATTACCGCATCACCGATGCTGG
TCATCACCAACCCTGAACTGTCCGACATCAAACTCTGGGTGGATGAAGGG
AAATTCCTGACTGCccaattctttattttctttaactgtTTGTTTACTCG
GCATATCTGATGCCATATTGCCCTGAAGTGGGAAAATGTTAAATCTACCG
TTGCGGCTAAATGAGCTTCCAACAGTGACTGATGATCGGCCCGGCTTTTC
TTGGCGTATTCCTCTGCCACTCTTTCAAATTCCTCGGTTTCACGtttctc
tttttcaatttttgttaagaTTTTAATAGGACACGGAAAAGTAAAAGTCG
GTTCATATGCCCTACTGCACATGATTTTGCCGTTCCCATCCTCAGTCACT
ATTAGGCCCTCATGCGCCTTATCCGAACTTCGCGCCCCTCTACCACCCCT
ACTTTTTGCGTTGCTCTCATACGTCCTAGTGGCTTTTTCAAGGATTAGCC
CGTTGTCCAATTGGTAATATTTTTCCTTTACAGCGTGTTGAATAGCGCCA
CCTATCTTGAGAGTGGGGATGATGGCATAGTCCCCTATAATGTATGCTTT
GTACCGACCCATTCTATGAAATGCTTCCCTATCATGGGTGACATTCCCCC
AGATAATGATGGACATTGGCTTCTCCTCAGGCCGACAGGAAAACCTATTA
TAATCGCAGTGGCTATGAGTTAAAGAGGTGTGTAAATTTGGGTTTTTNTT
CTTTTCCGTGTAGTCCCTGTGTCCGATTGACGGGCTGGTATCGATTCCAC
CAATCAGATTTCGtcaacaccaaaaaaaacaacaactaaTAACTccaggt
aaaaaaaaattttccaaataaaaatttcaacgaAATAACCaataaaaaac
aacgaaaatttCAGTTGAATCCTATCCAGAAGAAATCTACTTCGCAAAGA
AGGTCGATTCAGGTCATTCTACTCCACTAATTTCAAATACTCTTATTCAG
CATTCACTTTAATTTTTGTTCACTCACAATCAATCATTCGCTTGTTGCAC
AAAAAACTTCATGGTTGGCCCAACAAACTCAGTAACTTTGCCTGTgtata
aacaaaaattaaaggGATCGCTGTGAAACAATCTCAACACTCTTCTGTTA
TTCTGTTTGGTCATGAGCTAATCTTGTTCAACTTTCATCAATTCTATTTT
TAGCTTGTTTATCATACCAAACAGTGTTTCTATTTTCATGTACAGAACTG
CGCATATTCTGTACAACTAATTTTCTCTGCAAATTTGCAATTCGATTTTC
TCCGAAATTTCTCGAAAACCTAAATACGTATATCTACTAAACCTCCATCA
TGATTCCTATATATCTCATTAAATTTCTATTATCCACCAACGTGACTGTT
CCACGCTCGGGCGCTAAGC Coding sequence (CDS) from alignment at scaffold_496:129503..133071 >TCONS_00069291 ID=TCONS_00069291|Name=TCONS_00069291|organism=Clytia hemisphaerica|type=CDS|length=1731bp|location=Sequence derived from alignment at scaffold_496:129503..133071 (Clytia hemisphaerica)
CTAGGTATCTTTTCCGGTGAAAAGAGTCTGGGCGTCGAGGTACGTGATCG
CCTTGTTAAGACGTCTGTGATCTATTTGTCGCCTGCGTTTTATGTGGTCC
CTATTTCTTTTTAAGACCGTTGTTTCTACGGTCGCTTCTTTTGGGGGCCC
GCTCATGGTCGCATATATTGGGAATGGTTCATCCATTGGGAAAGGTTCAG
TCATTGGGAAAGGTTCAGCCATCCTCTTTTCTAGTGTCATCGGGGAATCT
GGCCTCTCAGGGACTTCTGCTTCTGTTTTCTTCTCCGGTGTTAGATCCAC
TCCCTGTCTACACCCTGCACAAACGCAGTTTCCAAGTTGTCCCGTGGCCC
TTAGGTAGATTATGTAACCCCCCAATGGCAGCAAGACGACCCAGATGAGC
AGACCCGGAATACCCCCGAATATCTCCTTAAAAACGTAGGAGACACCCGT
TAAGGAATTCTTGACCGCTGTACCTGTACTGTCTATTACATCTGCTGTAC
CCTCGCCTATTGCCTTGACAAGGGTTGCTCCTCCATTTCCGGCGCCATTG
AAGGTATCCTTCAATGCCGTCCCTAAGCTAGATATTACCTTGTCCCCTGC
ATTACCTGCAGCTTCTAGGACGCTTGCGAGGCCCAATCCGATTCCCTCAA
TTATTGACCCTGACTTGGTCGCACCTTGGTGAAGTTTAACTAATTCTCCA
AGTGTAAATTCACTTTCTGCCATCATTTGTAGTAGACTAGGCTGATCTAG
TATAACCGGGTTCTCTAAGACGATCTTTGTGTTGAATCCTCTGGGAGGGT
TCAACATATCGGGGAATCGAATTCGGTCTCTCAATTTTGACCTTAATATA
TCTACTTTCCCTTTATGGTCAATGTGGTATACCCTTTTACTTTTAGAAAT
CACAACTGTGTGCTTTTCCCTTTTTGTGCAATTTATTTGTCGTGATTTCG
GTAGGAGATTCCGATCCTCCACCCTGAGGAAGACGGTTTTATTCTCATTT
CGTAGGTAGACAGGAAAGTGCTGAAAGcattttcctttgatttttctgtC
CCAGTGCACCATGTAAGACTTAACCCTTTTGCACTTATATGTCATTACCG
CATCACCGATGCTGGTCATCACCAACCCTGAACTGTCCGACATCAAACTC
TGGGTGGATGAAGGGAAATTCCTGACTGCccaattctttattttctttaa
ctgtTTGTTTACTCGGCATATCTGATGCCATATTGCCCTGAAGTGGGAAA
ATGTTAAATCTACCGTTGCGGCTAAATGAGCTTCCAACAGTGACTGATGA
TCGGCCCGGCTTTTCTTGGCGTATTCCTCTGCCACTCTTTCAAATTCCTC
GGTTTCACGtttctctttttcaatttttgttaagaTTTTAATAGGACACG
GAAAAGTAAAAGTCGGTTCATATGCCCTACTGCACATGATTTTGCCGTTC
CCATCCTCAGTCACTATTAGGCCCTCATGCGCCTTATCCGAACTTCGCGC
CCCTCTACCACCCCTACTTTTTGCGTTGCTCTCATACGTCCTAGTGGCTT
TTTCAAGGATTAGCCCGTTGTCCAATTGGTAATATTTTTCCTTTACAGCG
TGTTGAATAGCGCCACCTATCTTGAGAGTGGGGATGATGGCATAGTCCCC
TATAATGTATGCTTTGTACCGACCCATTCTATGAAATGCTTCCCTATCAT
GGGTGACATTCCCCCAGATAATGATGGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069291-exon-scaffold_496-1491911889:129503..133071 | TCONS_00069291-exon-scaffold_496-1491911889:129503..133071 | Clytia hemisphaerica | exon |
| TCONS_00069291-exon-scaffold_496-1510915933:129503..133071 | TCONS_00069291-exon-scaffold_496-1510915933:129503..133071 | Clytia hemisphaerica | exon |
| TCONS_00069291-exon-scaffold_496-1575043694:129503..133071 | TCONS_00069291-exon-scaffold_496-1575043694:129503..133071 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:129503..133071 . |
Blast
The following BLAST results are available for this feature:
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