TCONS_00069286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069286
Unique NameTCONS_00069286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069286 ID=TCONS_00069286|Name=TCONS_00069286|organism=Clytia hemisphaerica|type=transcript|length=604bp
GAAAAAAATAGGATTGAAGCGAGATATCATCGCCAATTGTCAAAAGGAAC
CGACAATCATCAATATCACTAGTGAAGTTTTTTTAAGGTGTTTTAAGCTT
ACCTCAGGAAGTGAAAGGAATATTCTCCGAGTAACTAGTCGTCTAGTTTC
TAAATTTATCCAGTATAAAGAATGCtttgaaaaagagaaagaaagacTTG
AAGCTGATCGCAGTATCTCTGTAGATGAAATGGCTGATCTTTTCTTCGAG
TACAAAGCCTTTATGGAAGCTGAAGTTGATAAAGCCAAAGACAAATTTTG
TAAAGAGTTAGAAATAGATTTTTGTCAAGATGATGCTACAAATATCAAGC
ATGCTGGCTACATGGCAAATATGGTCAATCAAATTCGTGCTATAATACAA
GATATTAGAGTGAAAGCTCTCACGTACCAAAATGACCATAATTCAAGTGA
TCTCAGAAAATGTCGTCATTGTGGTTGTGTTTGGGTTAGGGCACAAGATT
GTGATGATTGGACCACGTGTGGAAATCTGCCCTGCTCATATTCAGATAAG
AACGGTTATGAAATGGCTATCTATTCCTTCAAACTCTTGGAGGATGGTGa
cttt
Run BLAST on NCBI

protein sequence of TCONS_00069286-protein

>TCONS_00069286-protein ID=TCONS_00069286-protein|Name=TCONS_00069286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
KKIGLKRDIIANCQKEPTIINITSEVFLRCFKLTSGSERNILRVTSRLVS
KFIQYKECFEKEKERLEADRSISVDEMADLFFEYKAFMEAEVDKAKDKFC
KELEIDFCQDDATNIKHAGYMANMVNQIRAIIQDIRVKALTYQNDHNSSD
LRKCRHCGCVWVRAQDCDDWTTCGNLPCSYSDKNGYEMAIYSFKLLEDGD
F
Run BLAST on NCBI

transcript from alignment at scaffold_496:85357..85960

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069286 ID=TCONS_00069286|Name=TCONS_00069286|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at scaffold_496:85357..85960 (Clytia hemisphaerica)
aaagtCACCATCCTCCAAGAGTTTGAAGGAATAGATAGCCATTTCATAAC
CGTTCTTATCTGAATATGAGCAGGGCAGATTTCCACACGTGGTCCAATCA
TCACAATCTTGTGCCCTAACCCAAACACAACCACAATGACGACATTTTCT
GAGATCACTTGAATTATGGTCATTTTGGTACGTGAGAGCTTTCACTCTAA
TATCTTGTATTATAGCACGAATTTGATTGACCATATTTGCCATGTAGCCA
GCATGCTTGATATTTGTAGCATCATCTTGACAAAAATCTATTTCTAACTC
TTTACAAAATTTGTCTTTGGCTTTATCAACTTCAGCTTCCATAAAGGCTT
TGTACTCGAAGAAAAGATCAGCCATTTCATCTACAGAGATACTGCGATCA
GCTTCAAgtctttctttctctttttcaaaGCATTCTTTATACTGGATAAA
TTTAGAAACTAGACGACTAGTTACTCGGAGAATATTCCTTTCACTTCCTG
AGGTAAGCTTAAAACACCTTAAAAAAACTTCACTAGTGATATTGATGATT
GTCGGTTCCTTTTGACAATTGGCGATGATATCTCGCTTCAATCCTATTTT
TTTC

Coding sequence (CDS) from alignment at scaffold_496:85357..85960

>TCONS_00069286 ID=TCONS_00069286|Name=TCONS_00069286|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_496:85357..85960 (Clytia hemisphaerica)
aaagtCACCATCCTCCAAGAGTTTGAAGGAATAGATAGCCATTTCATAAC
CGTTCTTATCTGAATATGAGCAGGGCAGATTTCCACACGTGGTCCAATCA
TCACAATCTTGTGCCCTAACCCAAACACAACCACAATGACGACATTTTCT
GAGATCACTTGAATTATGGTCATTTTGGTACGTGAGAGCTTTCACTCTAA
TATCTTGTATTATAGCACGAATTTGATTGACCATATTTGCCATGTAGCCA
GCATGCTTGATATTTGTAGCATCATCTTGACAAAAATCTATTTCTAACTC
TTTACAAAATTTGTCTTTGGCTTTATCAACTTCAGCTTCCATAAAGGCTT
TGTACTCGAAGAAAAGATCAGCCATTTCATCTACAGAGATACTGCGATCA
GCTTCAAgtctttctttctctttttcaaaGCATTCTTTATACTGGATAAA
TTTAGAAACTAGACGACTAGTTACTCGGAGAATATTCCTTTCACTTCCTG
AGGTAAGCTTAAAACACCTTAAAAAAACTTCACTAGTGATATTGATGATT
GTCGGTTCCTTTTGACAATTGGCGATGATATCTCGCTTCAATCCTATTTT
TTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043169XLOC_043169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069286-exon-scaffold_496-1491911889:85357..85960TCONS_00069286-exon-scaffold_496-1491911889:85357..85960Clytia hemisphaericaexon
TCONS_00069286-exon-scaffold_496-1510915933:85357..85960TCONS_00069286-exon-scaffold_496-1510915933:85357..85960Clytia hemisphaericaexon
TCONS_00069286-exon-scaffold_496-1575043694:85357..85960TCONS_00069286-exon-scaffold_496-1575043694:85357..85960Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069286-proteinTCONS_00069286-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:85357..85960 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.119469	0	0	0	0	0.0691088	2.86433	1.49866	0	0	0.102982	0	0	0	0.738942	0.788619	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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