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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069233 ID=TCONS_00069233|Name=TCONS_00069233|organism=Clytia hemisphaerica|type=transcript|length=3873bp CAACTaatgaaactgaagaagaagTACCTGAGGAAGAAACAATTTGTTAT ATctgaaattacatcaaaattgAATGAAGTCCTGGAAACTGCCAGAAGAT CTGGCCATTTTTCTTCAAGACCGGTGTCAAACTTACATGACAGAGAAGGA GCTGGAGGAGAACAATCCCAGCCCCATCGAATGTGAAGGCCCCAACAAAG CTTGATCCTCTCATTAAAGCACTAGTTCAGAAGAAGGGCTTCAACAAAGT TATATCCCAAGATGGAGAGCATCGAAATATTCATGAGAAACTTTATCAAG TCGTGGGTCCACTTTCGTCGACATGGACGAAACTTCAAGACGTtgtaaac gaaagtgaaaacgCTGAGAATGAGCCGGAGTCAGTCCTCAAAAACATTAA TGAGGCAATTGTGCTCTTGGGACAGGTCATAAATAAAGTCACTTACGACG AAAGAAGACCATCTATATTTTAGCAGGACTGAAtgatataaaataagaaa aatctcTCCTTAAAGACAATCTAGAGGACCTTAACACAGAAACAGTTTCT GTTCGGAGAAACTTACCAAAAACATGCGAAGGAAATAGCTAAAGCTCAAG AGTCAGCTGAAAAGTTATTTGTCAAGTCTGGTGGTAAGAGGAAATGTTCT GCTACTAATCGGCCCAATCAACAAGGCCCCTCTCCCCGAGTCATCAAGGA CCACGTCAGGGCTATATCCACAGCCTTATTGGAGTATTTTTGAGCTTCTC TTTTTTGAATTCTCTTTTTTGAATTCACTTATTATGATTCGTGTTATTTT GATTGTCAAATTACCAATACAATTGCTTGTTACATCCTTTGCCCTGAGAT TTTAAAATAACATATTTCTTTATATCATAGCATTTGAACGACGTTCGGGT ACTACAAAATATTGTTGGCCAGCTGCAAACGTCGGGCCGGGTAAGTTTCA TGCTTTTTAATCATTTTCTGATGAAGACAAAGTAAGGTTGGTTCTATGGG ACTTTTCTGAAATATATTAAAACATTTATCCAACTACTACGTTTTCCCGG CTGaacaaaaattgacaaagaaaATTTCCTTATAACGAACCagctttgat tttgatttagaGCAGATCTATATTTACAGATATGATGATCAACATTTTCA GTTGGAGTACTTATACCTTCATGACAGTGACAGTCACACTCTGTTTATGA TGAATTTAATCTAATTCTTAAATATATTCGATTGATAGGAAGACAGGGAC GAAAGGAGGAAGCTGTTGCGAGATCTGCAGGTATATTAACTTTGACTTGT TATAGTATTTGCTCAACAGAAAGAGGAAGAAATATCACTTCAATTGTCTG TGTGTTTATGCACGAATGTCATGATTTTGGATTCAATAAGCCGCCAATTA TCAACAACACCTGATATTGCGTCGACAACTAAAGCTAAAATGCGAATAAG GAGTGTACACGATCTTGCAGATAGCTTTTAATATCTGAAACCATTTGGAG TCAAATCTCACTACAAGGAATACGTCGATGACCattgcaaaatttacaaa aactcTAAAGCCAAAATTCTTATGATTTTCAaggagtttttaaaatttta aaggaTGCAATGGTACCATGAAATGACAGGTATAGAAGAATGTTAATCAG TAAATCTGGCTCCTACAAAGATGCTATTGACCATCTTATAAGTGTTTGAC AAGCCATATATTGGTGTAACAATGCAATGCGCCAGCACTNAAGAATGTTA ATCAGTAAATCTGGCTCCTACAAAGATGCTATTGACCATCTTATAAGTGT TTGACAAGCCATATATTGGCGTAACAATGCAATGCGCCAGCACTTAAATG CCGCATTTTGACAGGAATAACAATTGCTTGAACTATAATGTAAAATTAAC TAGTAATGCCCAATAACTTCCTAatggaagtttttttgaaaaaagtagtC GTAGTCCGCGAGTATGAAAGGTTTTGTAGTGAACCAGCCAAACGTATGTG AGTTATGTTGGAACATATAAAAAGGATCAAAACGAGAAAAGGATCAAAGA AAAACGGGAATCAGAATGGTGTAAGAATCAGAAACCTGTACAGTTGGACA GAGAGGTAACAACATGTAAAGTTGGACAGAGATGGATATTGTATTACTTG AAATCCTACCCCATAAACGAGCTGGAACTGTTCGCAGCAAAGGAACACAC TGCTTACTGTTAATGAAGAAATTCAtgaaatttcattgaattaCACTCAC CATCCAAGCCGTAGTGGAGACACGCTTCAAAAGTTGAAAAGAGAGGCTGT AAGCCTTACAGTCAAGTTGGTTAAAAATTTAGTAGCCAACATCAACGGCC AGAATCAATCAGGAACCGTCTTTGAATATCGATCtgcttttgattttcat agaaaaattaCTTTTGAAGAGAGATGCGAGCTGTTGTCAAACCTTGGCAA CACACACAAGGTTAAATCAATTGAAGCAGATGATATTGGAGTTAcgatgt tttgataaaatatcctTCAAAAATCGAATCTGTTGCAGATCTCATGACAT TCTATCTTTCCAATCTGTATTCGAAAGTGGGCTGCAGGTGATTATGCTAA AGATCTCAAAACAGGAAATTTCTTATTCTGGAAATACATTTCCTCGATCG TTTTATACAGTAAGTCATCCAAACTTCTGCAAACTGTTGCATTTTCTCTA CACCATCCCGCCCCCCACTTGTCCCTTAGAAAGGTCCTACTCCAAGTTGG CAAAACTCTACTACAAAGATAGAAATAAACTGACAACTAAGCACATGGAG GTGCAATATAAGATAGCATTGCTGAAAGACCACTCGTTTAACTACGAGGC TGCACGAAAACACATGGAGTCTTCAGTCATTGCTTTGATGTGAGTTTGAT CTTGACAATGATTGTTTGTGTTTTTGGCTTTGTATACACGAAGGGTTTTC TCCATGCAAAAACTTTCTctatggaaactttttttttggttctACCACCC ATAGAAGACATACACACGAACTTTGTCTGCAAATAACATTTAAAACAGAT TCATGCCAAAAAGGCACCCTCGCATCATTGGAGAATAGCCTTTAAAACGT CAGCAAACTTACATACGAGATGGAATCAAGACCAACAGTGAAAAGCAACA AGTTAAAAATAGTTTGAAAGCCTAtggaaattcaagaaattgaagtAGAA TCAAGCCCCTCTGAAAATAACAACCTTTTCCGAACAAGTAATGACAACAA TTTAACCAGAAACAACTGCTCCAAATGAAACAACTCCAGATGAGTTCATG TTAGTGTCAACTAATCAAGGAGCACTCAGGAAACACAAATGAAGATGGAG AAGGAAATCTCAAATTCTTTTACGTTGAAGGACGATACAATTAATTACTC TTGTCGGGAACTGCTAATCGAGTAGCTCAATATTGACTGCGTGGTTTGGA GGATACTTCACAGATAAATCATCACACATTTCACAGCGATTCTTGGAAAG AGAAACATCACTGGATTTTTGCATGTCGAAGTAAATTTGTAGAAATCATA ATTTGCAATTCCTTACATCAAAGTAACAACTACCCAAAGAAAGTAATCAA AACACTAAGACAGATGGCCCAGTGTTCCAAACCGTCATTAAAAAAGATCG CCCCAACCCAACGACAACTGAATCTTGTAGATTATGGGGTTTTTGCAATT TCAAAGGCCGTTGAATTTATCTTTGCAGGAATAGATTTTTCtgcatattt tgatattttcaaaaatgagaCACCACCTACTTAAAAGAATCGAAGCAAAG TAATTCTCTCCATTACCGAAGACAAAAAAGCGAACACGGAAACGTCGCTC AGGGTTCATTTTCTCAATGTTTA Run BLAST on NCBI protein sequence of TCONS_00069233-protein >TCONS_00069233-protein ID=TCONS_00069233-protein|Name=TCONS_00069233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MILELRCFDKISFKNRICCRSHDILSFQSVFESGLQVIMLKISKQEISYS GNTFPRSFYTVSHPNFCKLLHFLYTIPPPTCPLERSYSKLAKLYYKDRNK LTTKHMEVQYKIALLKDHSFNYEAARKHMESSVIALM Run BLAST on NCBI transcript from alignment at scaffold_496:275101..280078- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069233 ID=TCONS_00069233|Name=TCONS_00069233|organism=Clytia hemisphaerica|type=transcript|length=4978bp|location=Sequence derived from alignment at scaffold_496:275101..280078- (Clytia hemisphaerica) CAACTAATGAAACTGAAGAAGAAGTACCTGAGGAAGAAACAATTTGTTAT
ATCTGAAATTACATCAAAATTGAATGAAGTCCTGGAAACTGCCAGAAGAT
CTGGCCATTTTTCTTCAAGACCGGTGTCAAACTTACATGACAGAGAAGGA
GCTGGAGGAGAACAATCCCAGCCCCATCGAATGTGAAGGCCCCAACAAAG
CTTGATCCTCTCATTAAAGCACTAGTTCAGAAGAAGGGCTTCAACAAAGT
TATATCCCAAGATGGAGAGCATCGAAATATTCATGAGAAACTTTATCAAG
TCGTGGGTCCACTTTCGTCGACATGGACGAAACTTCAAGACGTTGTAAAC
GAAAGTGAAAACGCTGAGAATGAGCCGGAGTCAGTCCTCAAAAACATTAA
TGAGGCAATTGTGCTCTTGGGACAGGTCATAAATAAAGTCACTTACGACG
AAAGAAGACCATCTATATTTTAGCAGGACTGAATGATATAAAATAAGAAA
AATCTCTCCTTAAAGACAATCTAGAGGACCTTAACACAGAAACAGTTTCT
GTTCGGAGAAACTTACCAAAAACATGCGAAGGAAATAGCTAAAGCTCAAG
AGTCAGCTGAAAAGTTATTTGTCAAGTCTGGTGGTAAGAGGAAATGTTCT
GCTACTAATCGGCCCAATCAACAAGGCCCCTCTCCCCGAGTCATCAAGGA
CCACGTCAGGGCTATATCCACAGCCTTATTGGAGTATTTTTGAGCTTCTC
TTTTTTGAATTCTCTTTTTTGAATTCACTTATTATGATTCGTGTTATTTT
GATTGTCAAATTACCAATACAATTGCTTGTTACATCCTTTGCCCTGAGAT
TTTAAAATAACATATTTCTTTATATCATAGCATTTGAACGACGTTCGGGT
ACTACAAAATATTGTTGGCCAGCTGCAAACGTCGGGCCGGGTAAGTTTCA
TGCTTTTTAATCATTTTCTGATGAAGACAAAGTAAGGTTGGTTCTATGGG
ACTTTTCTGAAATATATTAAAACATTTATCCAACTACTACGTTTTCCCGG
CTGAACAAAAATTGACAAAGAAAATTTCCTTATAACGAACCAGCTTTGAT
TTTGATTTAGAGCAGATCTATATTTACAGATATGATGATCAACATTTTCA
GTTGGAGTACTTATACCTTCATGACAGTGACAGTCACACTCTGTTTATGA
TGAATTTAATCTAATTCTTAAATATATTCGATTGATAGGAAGACAGGGAC
GAAAGGAGGAAGCTGTTGCGAGATCTGCAGGTATATTAACTTTGACTTGT
TATAGTATTTGCTCAACAGAAAGAGGAAGAAATATCACTTCAATTGTCTG
TGTGTTTATGCACGAATGTCATGATTTTGGATTCAATAAGCCGCCAATTA
TCAACAACACCTGATATTGCGTCGACAACTAAAGCTAAAATGCGAATAAG
GAGTGTACACGATCTTGCAGATAGCTTTTAATATCTGAAACCATTTGGAG
TCAAATCTCACTACAAGGAATACGTCGATGACCATTGCAAAATTTACAAA
AACTCTAAAGCCAAAATTCTTATGATTTTCAAGGAGTTTTTAAAATTTTA
AAGGATGCAATGGTACCATGAAATGACAGGTGTTGGAAACAGAAAGGTCA
AGGAACAGAAAAAAATTGCAAAAGAAGAAAGGTATAGAAGAATGTTAATC
AGTAAATCTGGCTCCTACAAAGATGCTATTGACCATCTTATAAGTGTTTG
ACAAGCCATATATTGGTGTAACAATGCAATGCGCCAGCACTNAAGAATGT
TAATCAGTAAATCTGGCTCCTACAAAGATGCTATTGACCATCTTATAAGT
GTTTGACAAGCCATATATTGGCGTAACAATGCAATGCGCCAGCACTTAAA
TGCCGCATTTTGACAGGAATAACAATTGCTTGAACTATAATGTAAAATTA
ACTAGTAATGCCCAATAACTTCCTAATGGAAGTTTTTTTGAAAAAAGTAG
TCGTAGTCCGCGAGTATGAAAGGTTTTGTAGTGAACCAGCCAAACGTATG
TGAGTTATGTTGGAACATATAAAAAGGATCAAAACGAGAAAAGGATCAAA
GAAAAACGGGAATCAGAATGGTGTAAGAATCAGAAACCTGTACAGTTGGA
CAGAGAGGTAACAACATGTAAAGTTGGACAGAGATGGATATTGTATTACT
TGAAATCCTACCCCATAAACGAGCTGGAACTGTTCGCAGCAAAGGAACAC
ACTGCTTACTGTTAATGAAGAAATTCATGAAATTTCATTGAATTACACTC
ACCATCCAAGCCGTAGTGGAGACACGCTTCAAAAGTTGAAAAGAGAGGCT
GTAAGCCTTACAGTCAAGTTGGTTAAAAATTTAGTAGCCAACATCAACGG
CCAGAATCAATCAGGAACCGTCTTTGAATATCGATCTGCTTTTGATTTTC
ATAGAAAAATTACTTTTGAAGAGAGATGCGAGCTGTTGTCAAACCTTGGC
AACACACACAAGGTTAAATCAATTGAAGCAGATGATATTGGAGTTACGAT
GTTTTGATAAAATATCCTTCAAAAATCGAATCTGTTGCAGATCTCATGAC
ATTCTATCTTTCCAATCTGTATTCGAAAGTGGGCTGCAGGTGATTATGCT
AAAGATCTCAAAACAGGAAATTTCTTATTCTGGAAATACATTTCCTCGAT
CGTTTTATACAGTAAGTCATCCAAACTTCTGCAAACTGTTGCATTTTCTC
TACACCATCCCGCCCCCCACTTGTCCCTTAGAAAGGTCCTACTCCAAGTT
GGCAAAACTCTACTACAAAGATAGAAATAAACTGACAACTAAGCACATGG
AGGTGCAATATAAGATAGCATTGCTGAAAGACCACTCGTTTAACTACGAG
GCTGCACGAAAACACATGGAGTCTTCAGTCATTGCTTTGATGTGAGTTTG
ATCTTGACAATGATTGTTTGTGTTTTTGGCTTTGTATACACATGGCTCCG
CCCCCCCCCACTTATTTGGGGGGGGGTGTAAATCTCAAATTGGCCTAAAA
GTGGGTGGGAGCTGTCTCATTTTTTAAACTCAGGGGGGACCTAAAAAAGT
GGGGGGAGCTGAAGGGCTACACTAAAGTTCTGGGGGGCTAATTAGAAAAC
TGTAAAATACCCCCTCACTATTGTTTTGGTTAATAAGTTAAGGATTTTTC
TATTGAATTTATTATCTCTTATACATTCTATTAAAATGTAGGCTAAAATG
GCAGATTTCTACCCTTAAAATTCCAAAATTTTCTCGTTGCCCAACCTTGG
TGGGCAACATTTATTTAAATTTTCAATTTGGACCCCCAATTTTTTTTAAC
CCCGCATTTTAATGATGTACATGAATTCTTTCTTCTCTCCCTCAGTTGGT
TGACGTCCCATGTTGATACGTAAAAAAACTAGTAATAATACTACCAGAAA
TGACAGTAGCTTTTTTTGCTGGGACCTGAACCTTGAAGGCAATTTTTGCA
GGGACCTGAACCTTACTGAAAAGTGGGAGGACCTAAATCGTAGGAGGGAC
CTAAATTTGTTGGGGGGACCTAGAACCCCATTCGGAGCCATGATACAACT
AAGAACAAACCCAACAAACGTTTCCACAAAAAGCAGCTATTTTGGAAATC
CGAATTATAGCAACGTAAAGAAACTGAAACGGAGAAAATCGGGATAATCG
TCAACGTGGTGGAATCTCACATTATAGAGATAAAAAAATTGCCTCTGAAA
AACCCTGCAATTTTCGAGTAATTCGATGTTGAAAATCACATTTTACTCGG
TTTAAATCGATTATTGGTAGTAATCAAGTTTTGCTTACACGAAGGGTTTT
CTCAACTGTACTCAATGGAAAAAGAATAAAAAATACCAGAATGGATAATA
ACATTGTAAAGATCATTTCTATAATCATTAAAAGTCTCTGGAGAAAGCCT
ACTGCTGACGTCAGCACTTTTCCAACAAGGAAGTGTGCTTAAATTAGGAT
TAAAATCGCTAATCGATAGCAATCAAATCGAATCTTGCTTACACGAAGGG
TTTTCTCCATGCAAAAACTTTCTCTATGGAAACTTTTTTTTTGGTTCTAC
CACCCATAGAAGACATACACACGAACTTTGTCTGCAAATAACATTTAAAA
CAGATTCATGCCAAAAAGGCACCCTCGCATCATTGGAGAATAGCCTTTAA
AACGTCAGCAAACTTACATACGAGATGGAATCAAGACCAACAGTGAAAAG
CAACAAGTTAAAAATAGTTTGAAAGCCTATGGAAATTCAAGAAATTGAAG
TAGAATCAAGCCCCTCTGAAAATAACAACCTTTTCCGAACAAGTAATGAC
AACAATTTAACCAGAAACAACTGCTCCAAATGAAACAACTCCAGATGAGT
TCATGTTAGTGTCAACTAATCAAGGAGCACTCAGGAAACACAAATGAAGA
TGGAGAAGGAAATCTCAAATTCTTTTACGTTGAAGGACGATACAATTAAT
TACTCTTGTCGGGAACTGCTAATCGAGTAGCTCAATATTGACTGCGTGGT
TTGGAGGATACTTCACAGATAAATCATCACACATTTCACAGCGATTCTTG
GAAAGAGAAACATCACTGGATTTTTGCATGTCGAAGTAAATTTGTAGAAA
TCATAATTTGCAATTCCTTACATCAAAGTAACAACTACCCAAAGAAAGTA
ATCAAAACACTAAGACAGATGGCCCAGTGTTCCAAACCGTCATTAAAAAA
GATCGCCCCAACCCAACGACAACTGAATCTTGTAGATTATGGGGTTTTTG
CAATTTCAAAGGCCGTTGAATTTATCTTTGCAGGAATAGATTTTTCTGCA
TATTTTGATATTTTCAAAAATGAGACACCACCTACTTAAAAGAATCGAAG
CAAAGTAATTCTCTCCATTACCGAAGACAAAAAAGCGAACACGGAAACGT
CGCTCAGGGTTCATTTTCTCAATGTTTA Coding sequence (CDS) from alignment at scaffold_496:275101..280078- >TCONS_00069233 ID=TCONS_00069233|Name=TCONS_00069233|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_496:275101..280078- (Clytia hemisphaerica) ATGATATTGGAGTTACGATGTTTTGATAAAATATCCTTCAAAAATCGAAT CTGTTGCAGATCTCATGACATTCTATCTTTCCAATCTGTATTCGAAAGTG GGCTGCAGGTGATTATGCTAAAGATCTCAAAACAGGAAATTTCTTATTCT GGAAATACATTTCCTCGATCGTTTTATACAGTAAGTCATCCAAACTTCTG CAAACTGTTGCATTTTCTCTACACCATCCCGCCCCCCACTTGTCCCTTAG AAAGGTCCTACTCCAAGTTGGCAAAACTCTACTACAAAGATAGAAATAAA CTGACAACTAAGCACATGGAGGTGCAATATAAGATAGCATTGCTGAAAGA CCACTCGTTTAACTACGAGGCTGCACGAAAACACATGGAGTCTTCAGTCA TTGCTTTGATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00069233-exon-scaffold_496-1575043694:278450..280078 | TCONS_00069233-exon-scaffold_496-1575043694:278450..280078 | Clytia hemisphaerica | exon |
TCONS_00069233-exon-scaffold_496-1575043694:277088..278397 | TCONS_00069233-exon-scaffold_496-1575043694:277088..278397 | Clytia hemisphaerica | exon |
TCONS_00069233-exon-scaffold_496-1575043694:275101..276034 | TCONS_00069233-exon-scaffold_496-1575043694:275101..276034 | Clytia hemisphaerica | exon |
TCONS_00069233-exon-scaffold_496-1510915933:278450..280078 | TCONS_00069233-exon-scaffold_496-1510915933:278450..280078 | Clytia hemisphaerica | exon |
TCONS_00069233-exon-scaffold_496-1510915933:277088..278397 | TCONS_00069233-exon-scaffold_496-1510915933:277088..278397 | Clytia hemisphaerica | exon |
TCONS_00069233-exon-scaffold_496-1510915933:275101..276034 | TCONS_00069233-exon-scaffold_496-1510915933:275101..276034 | Clytia hemisphaerica | exon |
TCONS_00069233-exon-scaffold_496-1491911889:278450..280078 | TCONS_00069233-exon-scaffold_496-1491911889:278450..280078 | Clytia hemisphaerica | exon |
TCONS_00069233-exon-scaffold_496-1491911889:277088..278397 | TCONS_00069233-exon-scaffold_496-1491911889:277088..278397 | Clytia hemisphaerica | exon |
TCONS_00069233-exon-scaffold_496-1491911889:275101..276034 | TCONS_00069233-exon-scaffold_496-1491911889:275101..276034 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_496 | supercontig | scaffold_496:275101..280078 - |
Blast
The following BLAST results are available for this feature:
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