TCONS_00069233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069233
Unique NameTCONS_00069233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3873

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069233 ID=TCONS_00069233|Name=TCONS_00069233|organism=Clytia hemisphaerica|type=transcript|length=3873bp
CAACTaatgaaactgaagaagaagTACCTGAGGAAGAAACAATTTGTTAT
ATctgaaattacatcaaaattgAATGAAGTCCTGGAAACTGCCAGAAGAT
CTGGCCATTTTTCTTCAAGACCGGTGTCAAACTTACATGACAGAGAAGGA
GCTGGAGGAGAACAATCCCAGCCCCATCGAATGTGAAGGCCCCAACAAAG
CTTGATCCTCTCATTAAAGCACTAGTTCAGAAGAAGGGCTTCAACAAAGT
TATATCCCAAGATGGAGAGCATCGAAATATTCATGAGAAACTTTATCAAG
TCGTGGGTCCACTTTCGTCGACATGGACGAAACTTCAAGACGTtgtaaac
gaaagtgaaaacgCTGAGAATGAGCCGGAGTCAGTCCTCAAAAACATTAA
TGAGGCAATTGTGCTCTTGGGACAGGTCATAAATAAAGTCACTTACGACG
AAAGAAGACCATCTATATTTTAGCAGGACTGAAtgatataaaataagaaa
aatctcTCCTTAAAGACAATCTAGAGGACCTTAACACAGAAACAGTTTCT
GTTCGGAGAAACTTACCAAAAACATGCGAAGGAAATAGCTAAAGCTCAAG
AGTCAGCTGAAAAGTTATTTGTCAAGTCTGGTGGTAAGAGGAAATGTTCT
GCTACTAATCGGCCCAATCAACAAGGCCCCTCTCCCCGAGTCATCAAGGA
CCACGTCAGGGCTATATCCACAGCCTTATTGGAGTATTTTTGAGCTTCTC
TTTTTTGAATTCTCTTTTTTGAATTCACTTATTATGATTCGTGTTATTTT
GATTGTCAAATTACCAATACAATTGCTTGTTACATCCTTTGCCCTGAGAT
TTTAAAATAACATATTTCTTTATATCATAGCATTTGAACGACGTTCGGGT
ACTACAAAATATTGTTGGCCAGCTGCAAACGTCGGGCCGGGTAAGTTTCA
TGCTTTTTAATCATTTTCTGATGAAGACAAAGTAAGGTTGGTTCTATGGG
ACTTTTCTGAAATATATTAAAACATTTATCCAACTACTACGTTTTCCCGG
CTGaacaaaaattgacaaagaaaATTTCCTTATAACGAACCagctttgat
tttgatttagaGCAGATCTATATTTACAGATATGATGATCAACATTTTCA
GTTGGAGTACTTATACCTTCATGACAGTGACAGTCACACTCTGTTTATGA
TGAATTTAATCTAATTCTTAAATATATTCGATTGATAGGAAGACAGGGAC
GAAAGGAGGAAGCTGTTGCGAGATCTGCAGGTATATTAACTTTGACTTGT
TATAGTATTTGCTCAACAGAAAGAGGAAGAAATATCACTTCAATTGTCTG
TGTGTTTATGCACGAATGTCATGATTTTGGATTCAATAAGCCGCCAATTA
TCAACAACACCTGATATTGCGTCGACAACTAAAGCTAAAATGCGAATAAG
GAGTGTACACGATCTTGCAGATAGCTTTTAATATCTGAAACCATTTGGAG
TCAAATCTCACTACAAGGAATACGTCGATGACCattgcaaaatttacaaa
aactcTAAAGCCAAAATTCTTATGATTTTCAaggagtttttaaaatttta
aaggaTGCAATGGTACCATGAAATGACAGGTATAGAAGAATGTTAATCAG
TAAATCTGGCTCCTACAAAGATGCTATTGACCATCTTATAAGTGTTTGAC
AAGCCATATATTGGTGTAACAATGCAATGCGCCAGCACTNAAGAATGTTA
ATCAGTAAATCTGGCTCCTACAAAGATGCTATTGACCATCTTATAAGTGT
TTGACAAGCCATATATTGGCGTAACAATGCAATGCGCCAGCACTTAAATG
CCGCATTTTGACAGGAATAACAATTGCTTGAACTATAATGTAAAATTAAC
TAGTAATGCCCAATAACTTCCTAatggaagtttttttgaaaaaagtagtC
GTAGTCCGCGAGTATGAAAGGTTTTGTAGTGAACCAGCCAAACGTATGTG
AGTTATGTTGGAACATATAAAAAGGATCAAAACGAGAAAAGGATCAAAGA
AAAACGGGAATCAGAATGGTGTAAGAATCAGAAACCTGTACAGTTGGACA
GAGAGGTAACAACATGTAAAGTTGGACAGAGATGGATATTGTATTACTTG
AAATCCTACCCCATAAACGAGCTGGAACTGTTCGCAGCAAAGGAACACAC
TGCTTACTGTTAATGAAGAAATTCAtgaaatttcattgaattaCACTCAC
CATCCAAGCCGTAGTGGAGACACGCTTCAAAAGTTGAAAAGAGAGGCTGT
AAGCCTTACAGTCAAGTTGGTTAAAAATTTAGTAGCCAACATCAACGGCC
AGAATCAATCAGGAACCGTCTTTGAATATCGATCtgcttttgattttcat
agaaaaattaCTTTTGAAGAGAGATGCGAGCTGTTGTCAAACCTTGGCAA
CACACACAAGGTTAAATCAATTGAAGCAGATGATATTGGAGTTAcgatgt
tttgataaaatatcctTCAAAAATCGAATCTGTTGCAGATCTCATGACAT
TCTATCTTTCCAATCTGTATTCGAAAGTGGGCTGCAGGTGATTATGCTAA
AGATCTCAAAACAGGAAATTTCTTATTCTGGAAATACATTTCCTCGATCG
TTTTATACAGTAAGTCATCCAAACTTCTGCAAACTGTTGCATTTTCTCTA
CACCATCCCGCCCCCCACTTGTCCCTTAGAAAGGTCCTACTCCAAGTTGG
CAAAACTCTACTACAAAGATAGAAATAAACTGACAACTAAGCACATGGAG
GTGCAATATAAGATAGCATTGCTGAAAGACCACTCGTTTAACTACGAGGC
TGCACGAAAACACATGGAGTCTTCAGTCATTGCTTTGATGTGAGTTTGAT
CTTGACAATGATTGTTTGTGTTTTTGGCTTTGTATACACGAAGGGTTTTC
TCCATGCAAAAACTTTCTctatggaaactttttttttggttctACCACCC
ATAGAAGACATACACACGAACTTTGTCTGCAAATAACATTTAAAACAGAT
TCATGCCAAAAAGGCACCCTCGCATCATTGGAGAATAGCCTTTAAAACGT
CAGCAAACTTACATACGAGATGGAATCAAGACCAACAGTGAAAAGCAACA
AGTTAAAAATAGTTTGAAAGCCTAtggaaattcaagaaattgaagtAGAA
TCAAGCCCCTCTGAAAATAACAACCTTTTCCGAACAAGTAATGACAACAA
TTTAACCAGAAACAACTGCTCCAAATGAAACAACTCCAGATGAGTTCATG
TTAGTGTCAACTAATCAAGGAGCACTCAGGAAACACAAATGAAGATGGAG
AAGGAAATCTCAAATTCTTTTACGTTGAAGGACGATACAATTAATTACTC
TTGTCGGGAACTGCTAATCGAGTAGCTCAATATTGACTGCGTGGTTTGGA
GGATACTTCACAGATAAATCATCACACATTTCACAGCGATTCTTGGAAAG
AGAAACATCACTGGATTTTTGCATGTCGAAGTAAATTTGTAGAAATCATA
ATTTGCAATTCCTTACATCAAAGTAACAACTACCCAAAGAAAGTAATCAA
AACACTAAGACAGATGGCCCAGTGTTCCAAACCGTCATTAAAAAAGATCG
CCCCAACCCAACGACAACTGAATCTTGTAGATTATGGGGTTTTTGCAATT
TCAAAGGCCGTTGAATTTATCTTTGCAGGAATAGATTTTTCtgcatattt
tgatattttcaaaaatgagaCACCACCTACTTAAAAGAATCGAAGCAAAG
TAATTCTCTCCATTACCGAAGACAAAAAAGCGAACACGGAAACGTCGCTC
AGGGTTCATTTTCTCAATGTTTA
Run BLAST on NCBI

protein sequence of TCONS_00069233-protein

>TCONS_00069233-protein ID=TCONS_00069233-protein|Name=TCONS_00069233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MILELRCFDKISFKNRICCRSHDILSFQSVFESGLQVIMLKISKQEISYS
GNTFPRSFYTVSHPNFCKLLHFLYTIPPPTCPLERSYSKLAKLYYKDRNK
LTTKHMEVQYKIALLKDHSFNYEAARKHMESSVIALM
Run BLAST on NCBI

transcript from alignment at scaffold_496:275101..280078-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069233 ID=TCONS_00069233|Name=TCONS_00069233|organism=Clytia hemisphaerica|type=transcript|length=4978bp|location=Sequence derived from alignment at scaffold_496:275101..280078- (Clytia hemisphaerica)
CAACTAATGAAACTGAAGAAGAAGTACCTGAGGAAGAAACAATTTGTTAT ATCTGAAATTACATCAAAATTGAATGAAGTCCTGGAAACTGCCAGAAGAT CTGGCCATTTTTCTTCAAGACCGGTGTCAAACTTACATGACAGAGAAGGA GCTGGAGGAGAACAATCCCAGCCCCATCGAATGTGAAGGCCCCAACAAAG CTTGATCCTCTCATTAAAGCACTAGTTCAGAAGAAGGGCTTCAACAAAGT TATATCCCAAGATGGAGAGCATCGAAATATTCATGAGAAACTTTATCAAG TCGTGGGTCCACTTTCGTCGACATGGACGAAACTTCAAGACGTTGTAAAC GAAAGTGAAAACGCTGAGAATGAGCCGGAGTCAGTCCTCAAAAACATTAA TGAGGCAATTGTGCTCTTGGGACAGGTCATAAATAAAGTCACTTACGACG AAAGAAGACCATCTATATTTTAGCAGGACTGAATGATATAAAATAAGAAA AATCTCTCCTTAAAGACAATCTAGAGGACCTTAACACAGAAACAGTTTCT GTTCGGAGAAACTTACCAAAAACATGCGAAGGAAATAGCTAAAGCTCAAG AGTCAGCTGAAAAGTTATTTGTCAAGTCTGGTGGTAAGAGGAAATGTTCT GCTACTAATCGGCCCAATCAACAAGGCCCCTCTCCCCGAGTCATCAAGGA CCACGTCAGGGCTATATCCACAGCCTTATTGGAGTATTTTTGAGCTTCTC TTTTTTGAATTCTCTTTTTTGAATTCACTTATTATGATTCGTGTTATTTT GATTGTCAAATTACCAATACAATTGCTTGTTACATCCTTTGCCCTGAGAT TTTAAAATAACATATTTCTTTATATCATAGCATTTGAACGACGTTCGGGT ACTACAAAATATTGTTGGCCAGCTGCAAACGTCGGGCCGGGTAAGTTTCA TGCTTTTTAATCATTTTCTGATGAAGACAAAGTAAGGTTGGTTCTATGGG ACTTTTCTGAAATATATTAAAACATTTATCCAACTACTACGTTTTCCCGG CTGAACAAAAATTGACAAAGAAAATTTCCTTATAACGAACCAGCTTTGAT TTTGATTTAGAGCAGATCTATATTTACAGATATGATGATCAACATTTTCA GTTGGAGTACTTATACCTTCATGACAGTGACAGTCACACTCTGTTTATGA TGAATTTAATCTAATTCTTAAATATATTCGATTGATAGGAAGACAGGGAC GAAAGGAGGAAGCTGTTGCGAGATCTGCAGGTATATTAACTTTGACTTGT TATAGTATTTGCTCAACAGAAAGAGGAAGAAATATCACTTCAATTGTCTG TGTGTTTATGCACGAATGTCATGATTTTGGATTCAATAAGCCGCCAATTA TCAACAACACCTGATATTGCGTCGACAACTAAAGCTAAAATGCGAATAAG GAGTGTACACGATCTTGCAGATAGCTTTTAATATCTGAAACCATTTGGAG TCAAATCTCACTACAAGGAATACGTCGATGACCATTGCAAAATTTACAAA AACTCTAAAGCCAAAATTCTTATGATTTTCAAGGAGTTTTTAAAATTTTA AAGGATGCAATGGTACCATGAAATGACAGGTGTTGGAAACAGAAAGGTCA AGGAACAGAAAAAAATTGCAAAAGAAGAAAGGTATAGAAGAATGTTAATC AGTAAATCTGGCTCCTACAAAGATGCTATTGACCATCTTATAAGTGTTTG ACAAGCCATATATTGGTGTAACAATGCAATGCGCCAGCACTNAAGAATGT TAATCAGTAAATCTGGCTCCTACAAAGATGCTATTGACCATCTTATAAGT GTTTGACAAGCCATATATTGGCGTAACAATGCAATGCGCCAGCACTTAAA TGCCGCATTTTGACAGGAATAACAATTGCTTGAACTATAATGTAAAATTA ACTAGTAATGCCCAATAACTTCCTAATGGAAGTTTTTTTGAAAAAAGTAG TCGTAGTCCGCGAGTATGAAAGGTTTTGTAGTGAACCAGCCAAACGTATG TGAGTTATGTTGGAACATATAAAAAGGATCAAAACGAGAAAAGGATCAAA GAAAAACGGGAATCAGAATGGTGTAAGAATCAGAAACCTGTACAGTTGGA CAGAGAGGTAACAACATGTAAAGTTGGACAGAGATGGATATTGTATTACT TGAAATCCTACCCCATAAACGAGCTGGAACTGTTCGCAGCAAAGGAACAC ACTGCTTACTGTTAATGAAGAAATTCATGAAATTTCATTGAATTACACTC ACCATCCAAGCCGTAGTGGAGACACGCTTCAAAAGTTGAAAAGAGAGGCT GTAAGCCTTACAGTCAAGTTGGTTAAAAATTTAGTAGCCAACATCAACGG CCAGAATCAATCAGGAACCGTCTTTGAATATCGATCTGCTTTTGATTTTC ATAGAAAAATTACTTTTGAAGAGAGATGCGAGCTGTTGTCAAACCTTGGC AACACACACAAGGTTAAATCAATTGAAGCAGATGATATTGGAGTTACGAT GTTTTGATAAAATATCCTTCAAAAATCGAATCTGTTGCAGATCTCATGAC ATTCTATCTTTCCAATCTGTATTCGAAAGTGGGCTGCAGGTGATTATGCT AAAGATCTCAAAACAGGAAATTTCTTATTCTGGAAATACATTTCCTCGAT CGTTTTATACAGTAAGTCATCCAAACTTCTGCAAACTGTTGCATTTTCTC TACACCATCCCGCCCCCCACTTGTCCCTTAGAAAGGTCCTACTCCAAGTT GGCAAAACTCTACTACAAAGATAGAAATAAACTGACAACTAAGCACATGG AGGTGCAATATAAGATAGCATTGCTGAAAGACCACTCGTTTAACTACGAG GCTGCACGAAAACACATGGAGTCTTCAGTCATTGCTTTGATGTGAGTTTG ATCTTGACAATGATTGTTTGTGTTTTTGGCTTTGTATACACATGGCTCCG CCCCCCCCCACTTATTTGGGGGGGGGTGTAAATCTCAAATTGGCCTAAAA GTGGGTGGGAGCTGTCTCATTTTTTAAACTCAGGGGGGACCTAAAAAAGT GGGGGGAGCTGAAGGGCTACACTAAAGTTCTGGGGGGCTAATTAGAAAAC TGTAAAATACCCCCTCACTATTGTTTTGGTTAATAAGTTAAGGATTTTTC TATTGAATTTATTATCTCTTATACATTCTATTAAAATGTAGGCTAAAATG GCAGATTTCTACCCTTAAAATTCCAAAATTTTCTCGTTGCCCAACCTTGG TGGGCAACATTTATTTAAATTTTCAATTTGGACCCCCAATTTTTTTTAAC CCCGCATTTTAATGATGTACATGAATTCTTTCTTCTCTCCCTCAGTTGGT TGACGTCCCATGTTGATACGTAAAAAAACTAGTAATAATACTACCAGAAA TGACAGTAGCTTTTTTTGCTGGGACCTGAACCTTGAAGGCAATTTTTGCA GGGACCTGAACCTTACTGAAAAGTGGGAGGACCTAAATCGTAGGAGGGAC CTAAATTTGTTGGGGGGACCTAGAACCCCATTCGGAGCCATGATACAACT AAGAACAAACCCAACAAACGTTTCCACAAAAAGCAGCTATTTTGGAAATC CGAATTATAGCAACGTAAAGAAACTGAAACGGAGAAAATCGGGATAATCG TCAACGTGGTGGAATCTCACATTATAGAGATAAAAAAATTGCCTCTGAAA AACCCTGCAATTTTCGAGTAATTCGATGTTGAAAATCACATTTTACTCGG TTTAAATCGATTATTGGTAGTAATCAAGTTTTGCTTACACGAAGGGTTTT CTCAACTGTACTCAATGGAAAAAGAATAAAAAATACCAGAATGGATAATA ACATTGTAAAGATCATTTCTATAATCATTAAAAGTCTCTGGAGAAAGCCT ACTGCTGACGTCAGCACTTTTCCAACAAGGAAGTGTGCTTAAATTAGGAT TAAAATCGCTAATCGATAGCAATCAAATCGAATCTTGCTTACACGAAGGG TTTTCTCCATGCAAAAACTTTCTCTATGGAAACTTTTTTTTTGGTTCTAC CACCCATAGAAGACATACACACGAACTTTGTCTGCAAATAACATTTAAAA CAGATTCATGCCAAAAAGGCACCCTCGCATCATTGGAGAATAGCCTTTAA AACGTCAGCAAACTTACATACGAGATGGAATCAAGACCAACAGTGAAAAG CAACAAGTTAAAAATAGTTTGAAAGCCTATGGAAATTCAAGAAATTGAAG TAGAATCAAGCCCCTCTGAAAATAACAACCTTTTCCGAACAAGTAATGAC AACAATTTAACCAGAAACAACTGCTCCAAATGAAACAACTCCAGATGAGT TCATGTTAGTGTCAACTAATCAAGGAGCACTCAGGAAACACAAATGAAGA TGGAGAAGGAAATCTCAAATTCTTTTACGTTGAAGGACGATACAATTAAT TACTCTTGTCGGGAACTGCTAATCGAGTAGCTCAATATTGACTGCGTGGT TTGGAGGATACTTCACAGATAAATCATCACACATTTCACAGCGATTCTTG GAAAGAGAAACATCACTGGATTTTTGCATGTCGAAGTAAATTTGTAGAAA TCATAATTTGCAATTCCTTACATCAAAGTAACAACTACCCAAAGAAAGTA ATCAAAACACTAAGACAGATGGCCCAGTGTTCCAAACCGTCATTAAAAAA GATCGCCCCAACCCAACGACAACTGAATCTTGTAGATTATGGGGTTTTTG CAATTTCAAAGGCCGTTGAATTTATCTTTGCAGGAATAGATTTTTCTGCA TATTTTGATATTTTCAAAAATGAGACACCACCTACTTAAAAGAATCGAAG CAAAGTAATTCTCTCCATTACCGAAGACAAAAAAGCGAACACGGAAACGT CGCTCAGGGTTCATTTTCTCAATGTTTA

Coding sequence (CDS) from alignment at scaffold_496:275101..280078-

>TCONS_00069233 ID=TCONS_00069233|Name=TCONS_00069233|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_496:275101..280078- (Clytia hemisphaerica)
ATGATATTGGAGTTACGATGTTTTGATAAAATATCCTTCAAAAATCGAAT
CTGTTGCAGATCTCATGACATTCTATCTTTCCAATCTGTATTCGAAAGTG
GGCTGCAGGTGATTATGCTAAAGATCTCAAAACAGGAAATTTCTTATTCT
GGAAATACATTTCCTCGATCGTTTTATACAGTAAGTCATCCAAACTTCTG
CAAACTGTTGCATTTTCTCTACACCATCCCGCCCCCCACTTGTCCCTTAG
AAAGGTCCTACTCCAAGTTGGCAAAACTCTACTACAAAGATAGAAATAAA
CTGACAACTAAGCACATGGAGGTGCAATATAAGATAGCATTGCTGAAAGA
CCACTCGTTTAACTACGAGGCTGCACGAAAACACATGGAGTCTTCAGTCA
TTGCTTTGATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043147XLOC_043147Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069233-exon-scaffold_496-1575043694:278450..280078TCONS_00069233-exon-scaffold_496-1575043694:278450..280078Clytia hemisphaericaexon
TCONS_00069233-exon-scaffold_496-1575043694:277088..278397TCONS_00069233-exon-scaffold_496-1575043694:277088..278397Clytia hemisphaericaexon
TCONS_00069233-exon-scaffold_496-1575043694:275101..276034TCONS_00069233-exon-scaffold_496-1575043694:275101..276034Clytia hemisphaericaexon
TCONS_00069233-exon-scaffold_496-1510915933:278450..280078TCONS_00069233-exon-scaffold_496-1510915933:278450..280078Clytia hemisphaericaexon
TCONS_00069233-exon-scaffold_496-1510915933:277088..278397TCONS_00069233-exon-scaffold_496-1510915933:277088..278397Clytia hemisphaericaexon
TCONS_00069233-exon-scaffold_496-1510915933:275101..276034TCONS_00069233-exon-scaffold_496-1510915933:275101..276034Clytia hemisphaericaexon
TCONS_00069233-exon-scaffold_496-1491911889:278450..280078TCONS_00069233-exon-scaffold_496-1491911889:278450..280078Clytia hemisphaericaexon
TCONS_00069233-exon-scaffold_496-1491911889:277088..278397TCONS_00069233-exon-scaffold_496-1491911889:277088..278397Clytia hemisphaericaexon
TCONS_00069233-exon-scaffold_496-1491911889:275101..276034TCONS_00069233-exon-scaffold_496-1491911889:275101..276034Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069233-proteinTCONS_00069233-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:275101..280078 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.128866 0.263337 0.263279 0.266598 0.98322 0.424428 0.681499 0.582136 0.179448 0.267735 0.302099 0.289082 0.176189 0.24656 0.168038 0.250131 0.410209 0.379442 0.133809 0.239434 0.883034 0.910898 0.227836 0.31686 0.464206 0.453112 0.236324 0.323349 0.158767 0.177744
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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