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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069220 ID=TCONS_00069220|Name=TCONS_00069220|organism=Clytia hemisphaerica|type=transcript|length=328bp
TAGGCTCCCTCCGGTGGCAACCAATctacatttttacatttttatatttC
TATATAGAGCAACCTGATTGATTTGGAACAATATGATTTGAAGAGCATTG
ATTGGGATACTTGGAGTTGGTCAAGCCAGGAATCTAATGAAAATAACAAA
GAAGAGGATTTTGCTAATTTCAAGATAACATATTCCGATAGCAGTGATAG
CGATGGAATCAACGAGGGACTCAACTCTCTAGAAGACACGTTCCGCGAAG
ACGAGGTATTCAATATAATACTTTTTAAATATTCCCTCTATCAAGGAAAT
ATTTATTACAATGACGCGTTTCCTTTTT Run BLAST on NCBI transcript from alignment at scaffold_496:12643..14804- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069220 ID=TCONS_00069220|Name=TCONS_00069220|organism=Clytia hemisphaerica|type=transcript|length=2162bp|location=Sequence derived from alignment at scaffold_496:12643..14804- (Clytia hemisphaerica)
TAGGCTCCCTCCGGTGGCAACCAATCTACATTTTTACATTTTTATATTTC
TATATAGAGCAACCTGATTGATTTGGAACAATATGATTTGAAGAGCATTG
ATTGGGATACTTGGAGTTGGTCAAGCCAGGTACTAAATTATATCTTTCCT
ATTCTGTTGTGTAGTAGCAGTAGCAGTACAAATATTTATCTAGTTTCTTT
TGTCTTGTGGATTTTGTCTTGCTGTTTTCTATCAGGTCTAAATTATCGGA
ATTGAATCTTAACAGATCTTAACAGATCGTAAACATTTTCTTGCCATGCA
CGCTAGACGCGTAAATGCTATAAACTGCATCTTCTTTTTTTAAGTAATAT
TCAAGAGATGCTAGAATGAACACTCAGAATTAAGGGCTTTTTACACCTTC
CTATTATTAGTTAAACCGGAGTTAAACCCGTGGGAAAATGAAAGAATATT
GTCCAAAAATCTATAATTTTTCCCCTCAAAATTGGGTCCAAAATGTAAAA
ATAGGTGAAATTAAGAAGATCAAAGAACCACTGAATATTCGTATTCACAT
CTTTTATATCACAAAGTTACATCTGTATGAATGCAAATTCATACACATTT
TAGCAGTGGAAAGATTTCTCTTTTAATAGCACACCGTTATGCAAACGTCA
TAATTATTACTTTTAACATTTGACCGAAATTCAATCCCACAATCCTTTCT
TCGTTAATTCGTAATGCGTGCAAGTTATTACTTTCCCATTGTCAATAAGT
GTAATTGACGTGCAAAAGCAATTAATGCAAAGGATGATGGGATAAAAACT
CGGACAAACAGTAATTTTGATGTCTATTTTTAGAATCACGACGGTATGCT
ATTAAAAAAAAACATTTTCCACCGGGAAAATAGGACTCTTCTACCTTTAA
AAACGATTTTCATTTCGAGTCTCATTTTCCTTCGAACTAAAATTCCTTGG
AAACTACGACTCGTGAATTCATAATATCCTGGAAAATCAGGACTTTAAAA
TCCTAATCTCGTCCCAGTGCCTTAATTTACCCTACACTGGATCTTAATAT
CAGATAATTAAAAATGCAACGATATCTAAGAGGAGGACCTTTTGTGTTTC
AGGAATCTAATGAAAATAACAAAGAAGAGGATTTTGCTAATTTCAAGGTA
AAACCTCGTTGACGTCTTCAATAGCAAGATTTTACTTATAATATTATATG
TAGTTGTATACTTCAACCTATTTTTGAAATCTTTCGGCCTGGAGTGTTAT
TACTTTAAACGTACTAATTTTCCCGCAATTTCGCGCAGATGCCCAAAAAT
GCGCGAAATTTTATACCAAAGTTATTAATTTAACGTATTAAGGCTCTTGG
AACTAAGTAACACAAACGCAAAACTTGGTTCTGTCAAGCTTGATTCTATA
CTGTAAAAAAAATGAAAATTAGCATGAAATTGCCTTTAACTGCAAGTGAC
AGAAAAAAGTTTCTCTCGTTCTGAAAAATCAGGAGGTTTTCAAAAACTTA
GTGTTCAAAGAGCCTACTCAAATTGGGAATGTTCTTGAAATGCTTTTAAA
TTTTTTATAAATACAGCCTCAATGTGTTTATAAAGTACTACAATGCTAGT
CAAAATATATTGGGACTTTCGGGTGTTTCACCGTCAAGAATTAAAGTTCT
GACGAGAATGTTGATTTCGGGCTATCCGTTTAATTTAATCGAAAGTTTCA
ATTTGGGAGGGATTTATTGACTTTCAGGCTATATTATCAGCCTTATTTGA
CCATTTTTAAACTTTTGGATGCACAGATCCTAAGGTTGTAAGTCTTTAGT
CTAATGTTAAAACTCAGAGTTAAAACTCTACAAACCCTAAGTTAAAGCAC
TGTTAAATCATTTGTAGTTTTAAAATTTCATGGGAATTCCCCCTTCGTCC
CAAATGGCCAGTATGGTAGGCTCTAAATAAAAACGTGCTTTGGTTTTCAA
AAATGATGGAAATTTGACGTGTTTTCTGGTATAATATATGCCACCTTATA
AATTTTAGATAACATATTCCGATAGCAGTGATAGCGATGGAATCAACGAG
GGACTCAACTCTCTAGAAGACACGTTCCGCGAAGACGAGGTATTCAATAT
AATACTTTTTAAATATTCCCTCTATCAAGGAAATATTTATTACAATGACG
CGTTTCCTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069220-exon-scaffold_496-1575043694:14676..14804 | TCONS_00069220-exon-scaffold_496-1575043694:14676..14804 | Clytia hemisphaerica | exon |
| TCONS_00069220-exon-scaffold_496-1575043694:13658..13702 | TCONS_00069220-exon-scaffold_496-1575043694:13658..13702 | Clytia hemisphaerica | exon |
| TCONS_00069220-exon-scaffold_496-1575043694:12643..12796 | TCONS_00069220-exon-scaffold_496-1575043694:12643..12796 | Clytia hemisphaerica | exon |
| TCONS_00069220-exon-scaffold_496-1510915933:14676..14804 | TCONS_00069220-exon-scaffold_496-1510915933:14676..14804 | Clytia hemisphaerica | exon |
| TCONS_00069220-exon-scaffold_496-1510915933:13658..13702 | TCONS_00069220-exon-scaffold_496-1510915933:13658..13702 | Clytia hemisphaerica | exon |
| TCONS_00069220-exon-scaffold_496-1510915933:12643..12796 | TCONS_00069220-exon-scaffold_496-1510915933:12643..12796 | Clytia hemisphaerica | exon |
| TCONS_00069220-exon-scaffold_496-1491911889:14676..14804 | TCONS_00069220-exon-scaffold_496-1491911889:14676..14804 | Clytia hemisphaerica | exon |
| TCONS_00069220-exon-scaffold_496-1491911889:13658..13702 | TCONS_00069220-exon-scaffold_496-1491911889:13658..13702 | Clytia hemisphaerica | exon |
| TCONS_00069220-exon-scaffold_496-1491911889:12643..12796 | TCONS_00069220-exon-scaffold_496-1491911889:12643..12796 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:12643..14804 - |
Blast
The following BLAST results are available for this feature:
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