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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069218 ID=TCONS_00069218|Name=TCONS_00069218|organism=Clytia hemisphaerica|type=transcript|length=1066bp
ACCGCATGGATAAAGAGTTTCAAAAAAGTCTTATTAGTCATAtttcaggg
attaaatttgAAAGAATTGGAGAACCAGTGAAGCCTTCATCCGTTTCTCA
CAAAGATGACATCGTTGGAGAACAGACAGAAATGAAGAacgaagttttca
aaatttttgaagatcaATGCATTTGTTTGGAGTTAGCAGATGAAGGCGTG
GAGTATAGCCATTGTCATCAAGTGTTTTGCCAGAAATGTATCGTTGGGTT
GGATTGCCCGAGTTGccgtcaaaatcaaaatcaaaatgttaacAAATTGC
ACGAATGAGGGGTGTAAAGAACGACCAACTCGCTCAAATCAATTGTATAC
AATACAATTGAATGTCCAAACGATGGATGCGATCAAAAGTATCAGAAATT
TGCTTCAAAGCAACACAAAAGGCAATGCGTGTATCGTTTGGAGGTTGGTA
TCGGATGTGGTCATTAATACAAGATGCTGGATCTGGCAAAACACCAGGAT
CAATGCTTATTTGTCGAACTTCCTTGTATGAATTCCAATTGTAATGATCG
TTATCTTACGGAAAGATGAGAGCTAGTGTTTGCAAACAGCAGATAATACG
ATGTTCGTTCTGTTTCTTTTCCGATACCAGGATCCAAGTATTGCATCATA
TACAATCGACATCCATTACCAAGAAGCTGTCGGCCCAATGTCCTCTTTGG
CTCCCAGTTCGTTTGGTACAAGTAGTCATCAACCGTGACGCGTGGCATGG
CTAAAACAGATAAATGTAAAGATGGCACTTGAACCGAATATAAATTGGTA
TCTTCGGTGAGAATTTTGGtatcatttatgacgttattaccacctgatga
cgtcatcattatgACATCTCTATTATGTTCTTTTTATCTGACCCGGTAAG
ATCTTTTGGACTCGCCGATATATGTACAACCATGGTCgtgatatttgaga
aaaaaggggaATCCAaagggaagttttgaaaccacaatcgatttgtaagt
gctctaaagtaggttggaagggtagagttttaactctgagttttaaaatg
agacttaagacgtagg Run BLAST on NCBI protein sequence of TCONS_00069218-protein >TCONS_00069218-protein ID=TCONS_00069218-protein|Name=TCONS_00069218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MKAWSIAIVIKCFARNVSLGWIARVAVKIKIKMLTNCTNEGCKERPTRSN
QLYTIQLNVQTMDAIKSIRNLLQSNTKGNACIVWRLVSDVVINTRCWIWQ
NTRINAYLSNFLV Run BLAST on NCBI transcript from alignment at scaffold_496:721672..722976+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069218 ID=TCONS_00069218|Name=TCONS_00069218|organism=Clytia hemisphaerica|type=transcript|length=1305bp|location=Sequence derived from alignment at scaffold_496:721672..722976+ (Clytia hemisphaerica)
ACCGCATGGATAAAGAGTTTCAAAAAAGTCTTATTAGTCATAtttcaggg
attaaatttgAAAGAATTGGAGAACCAGTGAAGCCTTCATCCGTTTCTCA
CAAAGATGACATCGTTGGAGAACAGACAGGTATGATATTGTTCTTGTTTA
CACAAAGGCATTTTTTGATGGACTTACATAAAATGTATCGCTGAAGAAAT
AGTTTCTGAAAAACAGCACTTAATAATCTTATACTCGATACATGATTCTG
TAATGTTTCCATATTTTATCTCATATCTAAATTATAGAAAAAGCACAGTT
ACATTTCTTTCATGGTACAGCTACATTTCTTTCATGTGTACTTAGGAGTG
TAAATTCTTTCTCCGCAGAAATGAAGAacgaagttttcaaaatttttgaa
gatcaATGCATTTGTTTGGAGTTAGCAGATGAAGGCGTGGAGTATAGCCA
TTGTCATCAAGTGTTTTGCCAGAAATGTATCGTTGGGTTGGATTGCCCGA
GTTGccgtcaaaatcaaaatcaaaatgttaacAAATTGCACGAATGAGGG
GTGTAAAGAACGACCAACTCGCTCAAATCAATTGTATACAATACAATTGA
ATGTCCAAACGATGGATGCGATCAAAAGTATCAGAAATTTGCTTCAAAGC
AACACAAAAGGCAATGCGTGTATCGTTTGGAGGTTGGTATCGGATGTGGT
CATTAATACAAGATGCTGGATCTGGCAAAACACCAGGATCAATGCTTATT
TGTCGAACTTCCTTGTATGAATTCCAATTGTAATGATCGTTATCTTACGG
AAAGATGAGAGCTAGTGTTTGCAAACAGCAGATAATACGATGTTCGTTCT
GTTTCTTTTCCGATACCAGGATCCAAGTATTGCATCATATACAATCGACA
TCCATTACCAAGAAGCTGTCGGCCCAATGTCCTCTTTGGCTCCCAGTTCG
TTTGGTACAAGTAGTCATCAACCGTGACGCGTGGCATGGCTAAAACAGAT
AAATGTAAAGATGGCACTTGAACCGAATATAAATTGGTATCTTCGGTGAG
AATTTTGGtatcatttatgacgttattaccacctgatgacgtcatcatta
tgACATCTCTATTATGTTCTTTTTATCTGACCCGGTAAGATCTTTTGGAC
TCGCCGATATATGTACAACCATGGTCgtgatatttgagaaaaaaggggaA
TCCAaagggaagttttgaaaccacaatcgatttgtaagtgctctaaagta
ggttggaagggtagagttttaactctgagttttaaaatgagacttaagac
gtagg Coding sequence (CDS) from alignment at scaffold_496:721672..722976+ >TCONS_00069218 ID=TCONS_00069218|Name=TCONS_00069218|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_496:721672..722976+ (Clytia hemisphaerica)
ATGAAGGCGTGGAGTATAGCCATTGTCATCAAGTGTTTTGCCAGAAATGT
ATCGTTGGGTTGGATTGCCCGAGTTGccgtcaaaatcaaaatcaaaatgt
taacAAATTGCACGAATGAGGGGTGTAAAGAACGACCAACTCGCTCAAAT
CAATTGTATACAATACAATTGAATGTCCAAACGATGGATGCGATCAAAAG
TATCAGAAATTTGCTTCAAAGCAACACAAAAGGCAATGCGTGTATCGTTT
GGAGGTTGGTATCGGATGTGGTCATTAATACAAGATGCTGGATCTGGCAA
AACACCAGGATCAATGCTTATTTGTCGAACTTCCTTGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069218-exon-scaffold_496-1491911889:721672..721800 | TCONS_00069218-exon-scaffold_496-1491911889:721672..721800 | Clytia hemisphaerica | exon |
| TCONS_00069218-exon-scaffold_496-1510915933:721672..721800 | TCONS_00069218-exon-scaffold_496-1510915933:721672..721800 | Clytia hemisphaerica | exon |
| TCONS_00069218-exon-scaffold_496-1575043694:721672..721800 | TCONS_00069218-exon-scaffold_496-1575043694:721672..721800 | Clytia hemisphaerica | exon |
| TCONS_00069218-exon-scaffold_496-1491911889:722040..722976 | TCONS_00069218-exon-scaffold_496-1491911889:722040..722976 | Clytia hemisphaerica | exon |
| TCONS_00069218-exon-scaffold_496-1510915933:722040..722976 | TCONS_00069218-exon-scaffold_496-1510915933:722040..722976 | Clytia hemisphaerica | exon |
| TCONS_00069218-exon-scaffold_496-1575043694:722040..722976 | TCONS_00069218-exon-scaffold_496-1575043694:722040..722976 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:721672..722976 + |
Blast
The following BLAST results are available for this feature:
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