TCONS_00069217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069217
Unique NameTCONS_00069217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069217 ID=TCONS_00069217|Name=TCONS_00069217|organism=Clytia hemisphaerica|type=transcript|length=1529bp
AAATAATCAGATCCACGAATTCTCTGAACGAATGTTTTTGGTATTACTGC
TAACTTGGAACATGTATTAATGACTTTTTAGAAACTCGCAAATTTCAGTC
GCTGGTTTTCCTCAAAACGTTCGAGGTGCCTGAATCCAgtcaaaaccttt
aaactttTAGGAAGCTTCCTGTCGGAAAAACTACTTCATATATGTGAAAA
GAAGATGGAGCCTACCATTCATGCCAAGTCACCCCTTGCAAGCCCTGACC
CATTCAAAGTGTACACAAAACGGAGTGTGAAAATTGACTACAAGAAAAAT
CCAACAATGTCAAAATGTCAAGGACAAGCAAGGATATTTCAAAGACGCTC
AAGTGAGAAGCCAAAAGTTCCAGTGTTGCAACCTTTAAAGATGATGATGT
TCGATACAGACCCTCTGTCTTTGTTGACAGTGTCACAAAGTtcaggcatt
gactctccagaACTTGTTTCTACTCCAAAGGATCAAAATAAATCACAATC
AAATATACCTATTGAAGCTTTAAATAGCACAGATCCCCTGAATTTATTTC
CAGAAGATGATAATTCAATCACCAGGTCAGCTCGCAAACGTAAGAAAAAA
CGTCATCGAACATCGTCAATAGTTTGTGGTGAAGACGAGGAATCATACAA
TACTTCAGAATTAATTTCCCCAACTGAAGAAACCCCATCAAAGCAACTTA
AATATATCCAAGACATTCGTTCTCCTATAGTCGAAAAGAATAATGAAAAG
ACAAAAGTATCTTTAAAAAGATCCAAATTTAAGTATGGGAATTTCATTAG
TTACAATAACACCAATGTCGAATCAAGTTCAGTTGACAATATTAAACCTT
GGCAAATAAATAGGGACCAACGTTtacataatttcaaaaaagaatggtTT
TCAGGGAAGAAGTGTTTATCAATCGGATGCGGGGATGGTCAAATTGTGTA
TTGGATTACCAAGAATTGCCATCCTTTGTTGATCACTGGCTTAGACATAG
ATGAAGGATTGATAAATATTGCTAAAAATAGGAGTAGAGAGTTTCAAGAT
AATCATATAACAGACAAATTAGATTTTCCGGTATCCATTCCAATGAGTTG
TGGTCCTATTTCTACTGGCTTTAAAATCACACCTAGAAATATAACCAGGA
ATAATAGTACCTCATTCATCCATGGTGATGATCCATGAACCATCTTGACA
CGCACCTTCATTTCACAAGATGCAATTCTGGAAGGTGGTGACTCCTACAA
AAATGGTTTCTTTGGCATGTATGGAAGAGAACAAAATATCCCCCATTTTC
TGATCCTCTTCGTGCAAAGTGTCTCTTTCTATCATTACATCGCCATCATT
TTACGATAAAGGTTAGACCCAAAGGAGATGCCTTTTGAATTGAGATTCAA
GCCTGCACTAAATGGCACTAGAAAAGATTAGTTTGAAGGGATATTGCCAT
AATCATGTAACTGTCTTGTGGTATTTGCACCTAAAGATTTGGATGACAAA
TTTGTGCTTTTAATACTAATGAATTGTTC
Run BLAST on NCBI

transcript from alignment at scaffold_496:706915..710163+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069217 ID=TCONS_00069217|Name=TCONS_00069217|organism=Clytia hemisphaerica|type=transcript|length=3249bp|location=Sequence derived from alignment at scaffold_496:706915..710163+ (Clytia hemisphaerica)
AAATAATCAGATCCACGAATTCTCTGAACGAATGTTTTTGGTATTACTGC
TAACTTGGAACATGTATTAATGACTTTTTAGAAACTCGCAAATTTCAGTC
GCTGGTTTTCCTCAAAACGTTCGAGGTGCCTGAATCCAgtcaaaaccttt
aaactttTAGGAAGCTTCCTGTCGGAAAAACTACTTCATATATGTGAAAA
GAAGGTATGTAACATTATGTTTAACTCAAAGAAGTGTGGCTTGTATCATT
AGGGAGATTTAgtgatttttgtacgatttcTGGGGGCTCTGGGCGTTGCA
GTTGTTTTCAGTTTTAATATGACGACGTCATGGTCTGAGATGGAGAGACC
TAATTCGTTCTCCATCGTGGCAAAATTGTGAGAACCACAATTTTGATGTT
GATTGTTCATTTACATTTACCTAGTACCCCTCTAGGCCTCAAGAGTTCAT
CGAAAAGCATCCCTTTACAGctgcttttgttttgttttttagttATTGTA
AGAGTTTGTAAGAAAAAGGTCTAAAAAAGAGTGGGCGTTGGAACCTACCT
GTGGACCCTGGCTAGAGGGGAGAGGAGGGCGAGCAAATTGGCTGAAAGGT
GGGTATGTACAGCACTCACGCAAGGGGGGTTTCAGGGGATACTCGATTCC
GCAATTCTGctaattttttctccaatttccgtcaaactgTTTAAAATTGA
ACCTAAATTCTGCCACCAAAAATTCCTTTAAAATTCGAGATTATTGTCAA
AAATTCCgcgaattttgaatattttttgccaattccaaaattctgcaaaa
gcTCCACCAACCATGAACCCCCCGGCACACAAGTCAAAGTGTGCTCCTGT
CTCTGGCAGATTTCCGTCTACGTGAAGTAAATAAAGATTTTGTTTCTTTT
AGGGAGCCGtacatattcatttgacaacgcatagcgtcaaattgacgtta
cgagggggtggggggttttcaaaagttgggtttgacgttataagaaatca
aaggtatacctttttgtCAAAATCGCGAATATTTGTTTTACCACCAACCA
CACTATACTTTTTAAGTTGtcgaaaatatatttgtgtatgaattacatga
aaatttgcttgcataatcccattggttcGCGCTATGATGTCATTACgtat
catattttcattgtttgcgcaATCAAGCGACGGCACGGACCTAGCGCTAA
GTGGagcttttgatttctttctaaataaaggtcattagttaaaagaacac
atacacgCACGTCTACAACCAAGTACGGACTTTGCGatgggaaaactttg
atgaaaaaatggcaacaacttttggtatacaaactttcaaaagtttcaaa
ctTGCCAAAATTTAAATATTGTTAAATTATTATTGTTTAatatttcattt
atcagggttgttttgtaccgaaaatgttttccaaaaaatttccaaaaaaa
agaatttttttttaacctaCCACCCAGTGTTTAATAGTTAtgtattttaa
aatcttttctaGATGGAGCCTACCATTCATGCCAAGTCACCCCTTGCAAG
CCCTGACCCATTCAAAGTGTACACAAAACGGAGTGTGAAAATTGACTACA
AGAAAAATCCAACAATGTCAAAATGTCAAGGTAGGCTATAGCGATTTCTT
TAATTCGCCCATTGTGATGTATTTCCTTTCAGCAATGATATTTGTTTTTC
AACAAGGTATTCTAAAGCCTGTGGTCAAGTAAAACATACAATATAGTCCA
TAATTATTTGCTCACATTCACTAAGTTCTCTTACACAGCAAAGCAATTTA
AATTATATTAAAATTGTATTTAACTTCATGCCTTTATTCATTTAGGACAA
GCAAGGATATTTCAAAGACGCTCAAGTGAGAAGCCAAAAGTTCCAGTGTT
GCAACCTTTAAAGATGATGATGTTCGATACAGACCCTCTGTCTTTGTTGA
CAGTGTCACAAAGTtcaggcattgactctccagaACTTGTTTCTACTCCA
AAGGATCAAAATAAATCACAATCAAATATACCTATTGAAGCTTTAAATAG
CACAGATCCCCTGAATTTATTTCCAGAAGATGATAATTCAATCACCAGGT
CAGCTCGCAAACGTAAGAAAAAACGTCATCGAACATCGTCAATAGTTTGT
GGTGAAGACGAGGAATCATACAATACTTCAGAATTAATTTCCCCAACTGA
AGAAACCCCATCAAAGCAACTTAAATATATCCAAGACATTCGTTCTCCTA
TAGTCGAAAAGAATAATGAAAAGACAAAAGTATCTTTAAAAAGATCCAAA
TTTAAGTATGGGAATTTCATTAGTTACAATAACACCAATGTCGAATCAAG
TTCAGTTGACAATATTAAACCTTGGCAAATAAATAGGGACCAACGTTtac
ataatttcaaaaaagaatggtTTTCAGGGAAGAAGTGTTTATCAATCGGA
TGCGGGGATGGTCAAATTGTGTATTGGATTACCAAGAATTGCCATCCTTT
GTTGATCACTGGCTTAGACATAGATGAAGGATTGATAAATATTGCTAAAA
ATAGGAGTAGAGAGTTTCAAGATAATCATATAACAGACAAATTAGATTTT
CCGGTATCCATTCCAATGAGTTGTGGTCCTATTTCTACTGGCTTTAAAAT
CACACCTAGAAATATAACCAGGAATAATAGTACCTCATTCATCCATGTAA
GTCTTTCAATATGTTAATTTACTTGTACTGTGATTAAAAACGTCTTTATA
TTCTCTTCGGCTAAGTGAAagctttgatttgatttttttgagctCTATAT
TTTGTTGGTAACATATTTATTTAGGGTGATGATCCATGAACCATCTTGAC
ACGCACCTTCATTTCACAAGATGCAATTCTGGAAGGTGGTGACTCCTACA
AAAATGGTTTCTTTGGCATGTATGGAAGAGAACAAAATATCCCCCATTTT
CTGATCCTCTTCGTGCAAAGTGTCTCTTTCTATCATTACATCGCCATCAT
TTTACGATAAAGGTTAGACCCAAAAGAGATGCCTTTTGAATTGAGATTCA
AGCCTGCACTAAATGGCACTAGAAANAAAAGGTTAGACCCAAAGGAGATG
CCTTTTGAATTGAGATTCAAGCCTGCACTAAATGGCACTAGAAAAGATTA
GTTTGAAGGGATATTGCCATAATCATGTAACTGTCTTGTGGTATTTGCAC
CTAAAGATTTGGATGACAAATTTGTGCTTTTAATACTAATGAATTGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043136XLOC_043136Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069217-exon-scaffold_496-1491911889:706915..707118TCONS_00069217-exon-scaffold_496-1491911889:706915..707118Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1510915933:706915..707118TCONS_00069217-exon-scaffold_496-1510915933:706915..707118Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1575043694:706915..707118TCONS_00069217-exon-scaffold_496-1575043694:706915..707118Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1491911889:708427..708544TCONS_00069217-exon-scaffold_496-1491911889:708427..708544Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1510915933:708427..708544TCONS_00069217-exon-scaffold_496-1510915933:708427..708544Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1575043694:708427..708544TCONS_00069217-exon-scaffold_496-1575043694:708427..708544Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1491911889:708760..709610TCONS_00069217-exon-scaffold_496-1491911889:708760..709610Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1510915933:708760..709610TCONS_00069217-exon-scaffold_496-1510915933:708760..709610Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1575043694:708760..709610TCONS_00069217-exon-scaffold_496-1575043694:708760..709610Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1491911889:709739..709926TCONS_00069217-exon-scaffold_496-1491911889:709739..709926Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1510915933:709739..709926TCONS_00069217-exon-scaffold_496-1510915933:709739..709926Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1575043694:709739..709926TCONS_00069217-exon-scaffold_496-1575043694:709739..709926Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1491911889:709996..710163TCONS_00069217-exon-scaffold_496-1491911889:709996..710163Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1510915933:709996..710163TCONS_00069217-exon-scaffold_496-1510915933:709996..710163Clytia hemisphaericaexon
TCONS_00069217-exon-scaffold_496-1575043694:709996..710163TCONS_00069217-exon-scaffold_496-1575043694:709996..710163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:706915..710163 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.75518	8.10752	5.40153	2.85392	5.02891	3.46512	5.7285	10.0655	3.64402	3.90254	6.72628	6.07996	6.743	5.77311	5.27286	5.22698	6.15819	9.63857	4.25495	4.85972	4.28592	6.53993	6.96585	12.5217	6.64339	8.40982	8.86676	8.38258	11.9795	14.1952
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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