TCONS_00069216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069216
Unique NameTCONS_00069216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069216 ID=TCONS_00069216|Name=TCONS_00069216|organism=Clytia hemisphaerica|type=transcript|length=1886bp
attaaattccCGTCAATCAAACTAAAATAATCAGATCCACGAATTCTCTG
AACGAATGTTTTTGGTATTACTGCTAACTTGGAACATGTATTAATGACTT
TTTAGAAACTCGCAAATTTCAGTCGCTGGTTTTCCTCAAAACGTTCGAGG
TGCCTGAATCCAgtcaaaacctttaaactttTAGGAAGCTTCCTGTCGGA
AAAACTACTTCATATATGTGAAAAGAAGATGGAGCCTACCATTCATGCCA
AGTCACCCCTTGCAAGCCCTGACCCATTCAAAGTGTACACAAAACGGAGT
GTGAAAATTGACTACAAGAAAAATCCAACAATGTCAAAATGTCAAGGACA
AGCAAGGATATTTCAAAGACGCTCAAGTGAGAAGCCAAAAGTTCCAGTGT
TGCAACCTTTAAAGATGATGATGTTCGATACAGACCCTCTGTCTTTGTTG
ACAGTGTCACAAAGTtcaggcattgactctccagaACTTGTTTCTACTCC
AAAGGATCAAAATAAATCACAATCAAATATACCTATTGAAGCTTTAAATA
GCACAGATCCCCTGAATTTATTTCCAGAAGATGATAATTCAATCACCAGG
TCAGCTCGCAAACGTAAGAAAAAACGTCATCGAACATCGTCAATAGTTTG
TGGTGAAGACGAGGAATCATACAATACTTCAGAATTAATTTCCCCAACTG
AAGAAACCCCATCAAAGCAACTTAAATATATCCAAGACATTCGTTCTCCT
ATAGTCGAAAAGAATAATGAAAAGACAAAAGTATCTTTAAAAAGATCCAA
ATTTAAGTATGGGAATTTCATTAGTTACAATAACACCAATGTCGAATCAA
GTTCAGTTGACAATATTAAACCTTGGCAAATAAATAGGGACCAACGTTta
cataatttcaaaaaagaatggtTTTCAGGGAAGAAGTGTTTATCAATCGG
ATGCGGGGATGGTCAAATTGTGTATTGGATTACCAAGAATTGCCATCCTT
TGTTGATCACTGGCTTAGACATAGATGAAGGATTGATAAATATTGCTAAA
AATAGGAGTAGAGAGTTTCAAGATAATCATATAACAGACAAATTAGATTT
TCCGGTATCCATTCCAATGAGTTGTGGTCCTATTTCTACTGGCTTTAAAA
TCACACCTAGAAATATAACCAGGAATAATAGTACCTCATTCATCCATGGT
GATGATCCATGAACCATCTTGACACGCACCTTCATTTCACAAGATGCAAT
TCTGGAAGGTGGTGACTCCTACAAAAATGGTTTCTTTGGCATGTATGGAA
GAGAACAAAATATCCCCCATTTTCTGATCCTCTTCGTGCAAAGTGTCTCT
TTCTATCATTACATCGCCATCATTTTACGATAAAGGGCGATTATGTACCA
GCATCTCAACAAAGTTTGGAATCCGTTCAACAGGAATATGAGACCATTGT
CTTCTTGAGTACCAGTAAATGGATCCATCTCAATTATGGCGATGAAGGAC
TTAAACGCACTTTCAAGAAGATTTTCTTTCAACTTCGTCCAGGTGGTCGG
TTGTTGTTTGAACCACATACTATTAGCTGTTACAAAAAGTCAAGAAATCT
AACGACTGGTATCCGGCAGACATACGATAAGATGCGATTTCAACCGTCCG
ACTTCATCACTTATTTACTTTCATCTGAAGTTGGCTTCAAACAATCTGTT
TGCTTGGCACATACACGAAAACGAAAAACAAataacCTTCGACCGTTGTA
CTTACTTACAAAAGGTGATGGGTGAAGCACAAATTTTAGCatacttaatt
ttttatttcttgtacATTATATTTCAACCTGTACATAGTAACCAAAAACT
AAATCATCAAACATACCTAAGTCCTATCAGATCATT
Run BLAST on NCBI

transcript from alignment at scaffold_496:706891..711245+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069216 ID=TCONS_00069216|Name=TCONS_00069216|organism=Clytia hemisphaerica|type=transcript|length=4355bp|location=Sequence derived from alignment at scaffold_496:706891..711245+ (Clytia hemisphaerica)
attaaattccCGTCAATCAAACTAAAATAATCAGATCCACGAATTCTCTG
AACGAATGTTTTTGGTATTACTGCTAACTTGGAACATGTATTAATGACTT
TTTAGAAACTCGCAAATTTCAGTCGCTGGTTTTCCTCAAAACGTTCGAGG
TGCCTGAATCCAgtcaaaacctttaaactttTAGGAAGCTTCCTGTCGGA
AAAACTACTTCATATATGTGAAAAGAAGGTATGTAACATTATGTTTAACT
CAAAGAAGTGTGGCTTGTATCATTAGGGAGATTTAgtgatttttgtacga
tttcTGGGGGCTCTGGGCGTTGCAGTTGTTTTCAGTTTTAATATGACGAC
GTCATGGTCTGAGATGGAGAGACCTAATTCGTTCTCCATCGTGGCAAAAT
TGTGAGAACCACAATTTTGATGTTGATTGTTCATTTACATTTACCTAGTA
CCCCTCTAGGCCTCAAGAGTTCATCGAAAAGCATCCCTTTACAGctgctt
ttgttttgttttttagttATTGTAAGAGTTTGTAAGAAAAAGGTCTAAAA
AAGAGTGGGCGTTGGAACCTACCTGTGGACCCTGGCTAGAGGGGAGAGGA
GGGCGAGCAAATTGGCTGAAAGGTGGGTATGTACAGCACTCACGCAAGGG
GGGTTTCAGGGGATACTCGATTCCGCAATTCTGctaattttttctccaat
ttccgtcaaactgTTTAAAATTGAACCTAAATTCTGCCACCAAAAATTCC
TTTAAAATTCGAGATTATTGTCAAAAATTCCgcgaattttgaatattttt
tgccaattccaaaattctgcaaaagcTCCACCAACCATGAACCCCCCGGC
ACACAAGTCAAAGTGTGCTCCTGTCTCTGGCAGATTTCCGTCTACGTGAA
GTAAATAAAGATTTTGTTTCTTTTAGGGAGCCGtacatattcatttgaca
acgcatagcgtcaaattgacgttacgagggggtggggggttttcaaaagt
tgggtttgacgttataagaaatcaaaggtatacctttttgtCAAAATCGC
GAATATTTGTTTTACCACCAACCACACTATACTTTTTAAGTTGtcgaaaa
tatatttgtgtatgaattacatgaaaatttgcttgcataatcccattggt
tcGCGCTATGATGTCATTACgtatcatattttcattgtttgcgcaATCAA
GCGACGGCACGGACCTAGCGCTAAGTGGagcttttgatttctttctaaat
aaaggtcattagttaaaagaacacatacacgCACGTCTACAACCAAGTAC
GGACTTTGCGatgggaaaactttgatgaaaaaatggcaacaacttttggt
atacaaactttcaaaagtttcaaactTGCCAAAATTTAAATATTGTTAAA
TTATTATTGTTTAatatttcatttatcagggttgttttgtaccgaaaatg
ttttccaaaaaatttccaaaaaaaagaatttttttttaacctaCCACCCA
GTGTTTAATAGTTAtgtattttaaaatcttttctaGATGGAGCCTACCAT
TCATGCCAAGTCACCCCTTGCAAGCCCTGACCCATTCAAAGTGTACACAA
AACGGAGTGTGAAAATTGACTACAAGAAAAATCCAACAATGTCAAAATGT
CAAGGTAGGCTATAGCGATTTCTTTAATTCGCCCATTGTGATGTATTTCC
TTTCAGCAATGATATTTGTTTTTCAACAAGGTATTCTAAAGCCTGTGGTC
AAGTAAAACATACAATATAGTCCATAATTATTTGCTCACATTCACTAAGT
TCTCTTACACAGCAAAGCAATTTAAATTATATTAAAATTGTATTTAACTT
CATGCCTTTATTCATTTAGGACAAGCAAGGATATTTCAAAGACGCTCAAG
TGAGAAGCCAAAAGTTCCAGTGTTGCAACCTTTAAAGATGATGATGTTCG
ATACAGACCCTCTGTCTTTGTTGACAGTGTCACAAAGTtcaggcattgac
tctccagaACTTGTTTCTACTCCAAAGGATCAAAATAAATCACAATCAAA
TATACCTATTGAAGCTTTAAATAGCACAGATCCCCTGAATTTATTTCCAG
AAGATGATAATTCAATCACCAGGTCAGCTCGCAAACGTAAGAAAAAACGT
CATCGAACATCGTCAATAGTTTGTGGTGAAGACGAGGAATCATACAATAC
TTCAGAATTAATTTCCCCAACTGAAGAAACCCCATCAAAGCAACTTAAAT
ATATCCAAGACATTCGTTCTCCTATAGTCGAAAAGAATAATGAAAAGACA
AAAGTATCTTTAAAAAGATCCAAATTTAAGTATGGGAATTTCATTAGTTA
CAATAACACCAATGTCGAATCAAGTTCAGTTGACAATATTAAACCTTGGC
AAATAAATAGGGACCAACGTTtacataatttcaaaaaagaatggtTTTCA
GGGAAGAAGTGTTTATCAATCGGATGCGGGGATGGTCAAATTGTGTATTG
GATTACCAAGAATTGCCATCCTTTGTTGATCACTGGCTTAGACATAGATG
AAGGATTGATAAATATTGCTAAAAATAGGAGTAGAGAGTTTCAAGATAAT
CATATAACAGACAAATTAGATTTTCCGGTATCCATTCCAATGAGTTGTGG
TCCTATTTCTACTGGCTTTAAAATCACACCTAGAAATATAACCAGGAATA
ATAGTACCTCATTCATCCATGTAAGTCTTTCAATATGTTAATTTACTTGT
ACTGTGATTAAAAACGTCTTTATATTCTCTTCGGCTAAGTGAAagctttg
atttgatttttttgagctCTATATTTTGTTGGTAACATATTTATTTAGGG
TGATGATCCATGAACCATCTTGACACGCACCTTCATTTCACAAGATGCAA
TTCTGGAAGGTGGTGACTCCTACAAAAATGGTTTCTTTGGCATGTATGGA
AGAGAACAAAATATCCCCCATTTTCTGATCCTCTTCGTGCAAAGTGTCTC
TTTCTATCATTACATCGCCATCATTTTACGATAAAGGTTAGACCCAAAAG
AGATGCCTTTTGAATTGAGATTCAAGCCTGCACTAAATGGCACTAGAAAN
AAAAGGTTAGACCCAAAGGAGATGCCTTTTGAATTGAGATTCAAGCCTGC
ACTAAATGGCACTAGAAAAGATTAGTTTGAAGGGATATTGCCATAATCAT
GTAACTGTCTTGTGGTATTTGCACCTAAAGATTTGGATGACAAATTTGTG
CTTTTAATACTAATGAATTGTTCAAACTTTATTTCTCAGGGCGATTATGT
ACCAGCATCTCAACAAAGTTTGGAATCCGTTCAACAGGAATATGAGACCA
TTGTCTTCTTGAGTACCAGTAAATGGATCCATCTCAATTATGGCGATGAA
GGACTTAAACGCACTTTCAAGAAGATTTTCTTTCAACTTCGTCCAGGTGG
TCGGTTGTTGTTTGAACCACATACTATTAGCTGTTACAAAAAGTCAAGAA
ATCTAACGGTAATTGTCTTTTTAAATGGAACTGATTTATAGTGAGTCCCA
CctaaattctgtcatttttaatGCATGTACGCTGTAGCCAAATGCATTGG
TTTTATCCGTTTTGCTCTAATCTCTAGCAAGGATCCATTTTCTTTTGACC
TGATTGCTTGCAGCGAGTCTAAACCAACACGCCCTTTTTTGGTTACGAAA
TTTATGCTATCGTAAATCTTTTGCTGAAAAACGTCATATAATGAAAGTCT
CAGAACCCTTTGTCGTTTACTGTATGTAAAAGTATGATACGACTCTTAAC
CTAACCGATGTAAATCATAtaatgtctctttttattgGAATTTAGACTGG
TATCCGGCAGACATACGATAAGATGCGATTTCAACCGTCCGACTTCATCA
CTTATTTACTTTCATCTGAAGTTGGCTTCAAACAATCTGTTTGCTTGGCA
CATACACGAAAACGAAAAACAAGTAAGAAATTCTCCTCTAAAGACTTCGT
AATGGCTTCCTTCTTCTTTTATCTTTGTTGGATTGTTTCCACGATAAAAA
GTTgtgttgatttcatttttttttcgcaCTGAAGTCTCTATATCATTTTG
AGCGGAAGCTCTTAACTAATCTCTAGTAAAGCGAACGTAATTAAAATTTC
TAGTTCGATTATTTTATACTTATACATTATtacttctgtttttttttcag
ataacCTTCGACCGTTGTACTTACTTACAAAAGGTGATGGGTGAAGCACA
AATTTTAGCatacttaattttttatttcttgtacATTATATTTCAACCTG
TACATAGTAACCAAAAACTAAATCATCAAACATACCTAAGTCCTATCAGA
TCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043136XLOC_043136Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069216-exon-scaffold_496-1491911889:706891..707118TCONS_00069216-exon-scaffold_496-1491911889:706891..707118Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1510915933:706891..707118TCONS_00069216-exon-scaffold_496-1510915933:706891..707118Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1575043694:706891..707118TCONS_00069216-exon-scaffold_496-1575043694:706891..707118Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1491911889:708427..708544TCONS_00069216-exon-scaffold_496-1491911889:708427..708544Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1510915933:708427..708544TCONS_00069216-exon-scaffold_496-1510915933:708427..708544Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1575043694:708427..708544TCONS_00069216-exon-scaffold_496-1575043694:708427..708544Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1491911889:708760..709610TCONS_00069216-exon-scaffold_496-1491911889:708760..709610Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1510915933:708760..709610TCONS_00069216-exon-scaffold_496-1510915933:708760..709610Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1575043694:708760..709610TCONS_00069216-exon-scaffold_496-1575043694:708760..709610Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1491911889:709739..709926TCONS_00069216-exon-scaffold_496-1491911889:709739..709926Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1510915933:709739..709926TCONS_00069216-exon-scaffold_496-1510915933:709739..709926Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1575043694:709739..709926TCONS_00069216-exon-scaffold_496-1575043694:709739..709926Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1491911889:710180..710398TCONS_00069216-exon-scaffold_496-1491911889:710180..710398Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1510915933:710180..710398TCONS_00069216-exon-scaffold_496-1510915933:710180..710398Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1575043694:710180..710398TCONS_00069216-exon-scaffold_496-1575043694:710180..710398Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1491911889:710736..710862TCONS_00069216-exon-scaffold_496-1491911889:710736..710862Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1510915933:710736..710862TCONS_00069216-exon-scaffold_496-1510915933:710736..710862Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1575043694:710736..710862TCONS_00069216-exon-scaffold_496-1575043694:710736..710862Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1491911889:711091..711245TCONS_00069216-exon-scaffold_496-1491911889:711091..711245Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1510915933:711091..711245TCONS_00069216-exon-scaffold_496-1510915933:711091..711245Clytia hemisphaericaexon
TCONS_00069216-exon-scaffold_496-1575043694:711091..711245TCONS_00069216-exon-scaffold_496-1575043694:711091..711245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:706891..711245 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.7981	15.9644	10.4992	5.32089	1.17568	0.454086	3.50619	0.00102637	9.35939	7.21136	9.55084	5.51013	18.2996	14.39	9.98639	10.8108	16.7199	15.8892	12.2144	15.0104	9.61219	5.68534	46.4867	32.2059	3.35033	0.200052	18.0701	17.6883	24.3389	30.8288
Blast
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BLAST of TCONS_00069216 vs. Swiss-Prot (Human)
Match: MEPCE (7SK snRNA methylphosphate capping enzyme OS=Homo sapiens GN=MEPCE PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.058e-23
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 3 
Query: 1380 IKGDYVPASQQSLESVQQEYETIVFLSTSKWIHLNYGDEGLKRTFKKIFFQLRPGGRLLFEPHTISCYKKSRNLTTGIRQTYDKMRFQPSDFITYLLSSEVGFKQSVCLAHTRKRKTNNLRPLYLLTK 1763
            + G+YV      +E+   EY+ ++ LS +KW+HLN+GDEGLKR F++I+  LRPGG L+ EP   S Y K + LT  I + Y +++ +P  F +YL S +VGF     +A          RP+YL  K
Sbjct:  556 VTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHK 683
The following BLAST results are available for this feature:
BLAST of TCONS_00069216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEPCE7.058e-2339.847SK snRNA methylphosphate capping enzyme OS=Homo s... [more]
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