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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069206 ID=TCONS_00069206|Name=TCONS_00069206|organism=Clytia hemisphaerica|type=transcript|length=1483bp
Ngtgtcaacatcaacaagtgtcagcacatacaaaccggtcactacttctg
tccaatcaccatcaccatctacaagcaaaccagctccatcgACATCGATT
GGAAGCTCATCAAGCCAAGCTACAAGCAGTACTCCATACGTTAGTTCTTC
TGTATCTACACCATCTTCGAGCTCAGTATTTACATCCAGCAGTGCaagtt
caagtgtgtcaacTTCAACAACTGTCAGCACATACAAACCAATCACTACT
TCTGTCCAATCACCTTCACCATCtacaagcaaaccagctccatcTACATC
ATTGGCAACTACCACATCGACTTTGACTTCTTTCGTTACCACTGTTATCT
CGTCTACCTCTTTCACACTGCCAATCTTAACTACAACTGAGATCACACAA
ATTGAAGGAAGCAAATCAACAATCGTCTTTTCACCATCAACAAGCATTcc
atcatcatcgtcatcttcAACCCAAAGCACATCTGCATTATCAACAACAC
CAAGTCTTTCCACATCCATCCAAACAACTGCATCTTCATCTTCACCATCT
TCATCAAGCATCCAACCCACCTCCAGTTCCACTGTCATCCCAACAAGCTC
AGTTACACCATTGTGTCCCGCTTGTTTCCACAAAGGAAGTTATTACTCAG
TCAATGAGACATGGCAAGATGCAAGCAAATGTATCAACTACACTTGTGTC
GAAGTCAACAATCCATGTTTCCCAAGCAATGTTTCCACACAAATTGAAGT
CACGACTCCAGTCTGTCCAAAATGTCCACAGGGATACGATACCGTTGAGG
ATCCAACTGCATGTTGTCCAAAATGTGTACCAACCGAAAACATCCCAAGT
GTTTGCAAAGTCAAGAACTTCAGAATTGTCGAAATCGAAATGGAAGACAA
AGGAGTCAAATGTTGGTCCACAAAGAAATACAAACATACTGGATGCGCTG
GTCTTTGTGAATCTACCGTCTCTGCCACACCAGGAAGCAGCATGTTGACG
CCGTCATGTTCTTGTTGTCAACCGTCACGTGTCGTCAAACATAACGTCAC
AATGCAATGTACTGACGGACATAAATTCTTCGTCGATTTCCATGAATTCG
AAAGCTGTCAATGTAAGATCCAGAAATGTGGTAATAATTATGACACCTCG
GGTGTAGAGGTGGTCACATCGGGTGGAGGTGAAGAACGAAGCAAACGATC
CTTCATTGAAGACCTCGCCGAAACTGGATTAGACCCGAAAATGAAAGAAC
GTCAACGACGCAATTTGTTGAACGATCTTGCAATGTTGCATGCTAACAAG
AAGAAACGTTAAACTGGAAAATATTATagtagttttttttaaaagaatgc
tGACTGACGCTCAGCCTTTATGTTGTGTAAATGTGTAAtttattttgtca
ttttatttttcaatggaAGAAGGAAatagattatttttttcaagggaaat
atattttaaaattgaacatgaatgaaaaacaat Run BLAST on NCBI transcript from alignment at scaffold_496:638454..640310+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069206 ID=TCONS_00069206|Name=TCONS_00069206|organism=Clytia hemisphaerica|type=transcript|length=1857bp|location=Sequence derived from alignment at scaffold_496:638454..640310+ (Clytia hemisphaerica)
Ngtgtcaacatcaacaagtgtcagcacatacaaaccggtcactacttctg
tccaatcaccatcaccatctacaagcaaaccagctccatcgACATCGATT
GGAAGCTCATCAAGCCAAGCTACAAGCAGTACTCCATACGTTAGTTCTTC
TGTATCTACACCATCTTCGAGCTCAGTATTTACATCCAGCAGTGCaagtt
caagtgtgtcaacTTCAACAACTGTCAGCACATACAAACCAATCACTACT
TCTGTCCAATCACCTTCACCATCtacaagcaaaccagctccatcTACATC
ATTGGCAACTACCACATCGACTTTGACTTCTTTCGTTACCACTGTTATCT
CGTCTACCTCTTTCACACTGCCAATCTTAACTACAACTGAGATCACACAA
ATTGAAGGAAGCAAATCAACAATCGTCTTTTCACCATCAACAAGCATTcc
atcatcatcgtcatcttcAACCCAAAGCACATCTGCATTATCAACAACAC
CAAGTCTTTCCACATCCATCCAAACAACTGCATCTTCATCTTCACCATCT
TCATCAAGCATCCAACCCACCTCCAGTTCCACTGTCATCCCAACAAGCTC
AGTTACACCATGTAAGTTCATTTTCTTTGGTAATTATTTCGACAAGTTGA
CTGCTCTTGATCGAAGAAATATGTATTTTGCacaatgttttatttttcat
gtttcaCTAATAATGCCAATATTGATaaaatttcctcctttttgAATTTC
AGTGTGTCCCGCTTGTTTCCACAAAGGAAGTTATTACTCAGTCAATGAGA
CATGGCAAGATGCAAGCAAATGTATCAACTACACTTGTGTCGAAGTCAAC
AATCCATGTTTCCCAAGCAATGTTTCCACACAAATTGAAGTCACGACTCC
AGTCTGTCCAAAATGTCCACAGGTAAGAATCTCTTCTCCGTTGTAAACAG
TAAACATCAATTATTGCAAAGTTTGAAGAATTCGAGTTAAGTTTTTGTGT
ACATTTTAAGTTCCATCTGATACGAAAAAGTTTGCTTTGTATTGACGACT
GTTTCGTTGACCACTGTTGACCAGAGAAagctaatgagttcgaaatcaAA
GCTAAAAGTTATAAACTGAAATACTTATCAtgaactttctttttcttcaa
accaGGGATACGATACCGTTGAGGATCCAACTGCATGTTGTCCAAAATGT
GTACCAACCGAAAACATCCCAAGTGTTTGCAAAGTCAAGAACTTCAGAAT
TGTCGAAATCGAAATGGAAGACAAAGGAGTCAAATGTTGGTCCACAAAGA
AATACAAACATACTGGATGCGCTGGTCTTTGTGAATCTACCGTCTCTGCC
ACACCAGGAAGCAGCATGTTGACGCCGTCATGTTCTTGTTGTCAACCGTC
ACGTGTCGTCAAACATAACGTCACAATGCAATGTACTGACGGACATAAAT
TCTTCGTCGATTTCCATGAATTCGAAAGCTGTCAATGTAAGATCCAGAAA
TGTGGTAATAATTATGACACCTCGGGTGTAGAGGTGGTCACATCGGGTGG
AGGTGAAGAACGAAGCAAACGATCCTTCATTGAAGACCTCGCCGAAACTG
GATTAGACCCGAAAATGAAAGAACGTCAACGACGCAATTTGTTGAACGAT
CTTGCAATGTTGCATGCTAACAAGAAGAAACGTTAAACTGGAAAATATTA
TagtagttttttttaaaagaatgctGACTGACGCTCAGCCTTTATGTTGT
GTAAATGTGTAAtttattttgtcattttatttttcaatggaAGAAGGAAa
tagattatttttttcaagggaaatatattttaaaattgaacatgaatgaa
aaacaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069206-exon-scaffold_496-1491911889:638454..639064 | TCONS_00069206-exon-scaffold_496-1491911889:638454..639064 | Clytia hemisphaerica | exon |
| TCONS_00069206-exon-scaffold_496-1510915933:638454..639064 | TCONS_00069206-exon-scaffold_496-1510915933:638454..639064 | Clytia hemisphaerica | exon |
| TCONS_00069206-exon-scaffold_496-1575043694:638454..639064 | TCONS_00069206-exon-scaffold_496-1575043694:638454..639064 | Clytia hemisphaerica | exon |
| TCONS_00069206-exon-scaffold_496-1491911889:639206..639375 | TCONS_00069206-exon-scaffold_496-1491911889:639206..639375 | Clytia hemisphaerica | exon |
| TCONS_00069206-exon-scaffold_496-1510915933:639206..639375 | TCONS_00069206-exon-scaffold_496-1510915933:639206..639375 | Clytia hemisphaerica | exon |
| TCONS_00069206-exon-scaffold_496-1575043694:639206..639375 | TCONS_00069206-exon-scaffold_496-1575043694:639206..639375 | Clytia hemisphaerica | exon |
| TCONS_00069206-exon-scaffold_496-1491911889:639609..640310 | TCONS_00069206-exon-scaffold_496-1491911889:639609..640310 | Clytia hemisphaerica | exon |
| TCONS_00069206-exon-scaffold_496-1510915933:639609..640310 | TCONS_00069206-exon-scaffold_496-1510915933:639609..640310 | Clytia hemisphaerica | exon |
| TCONS_00069206-exon-scaffold_496-1575043694:639609..640310 | TCONS_00069206-exon-scaffold_496-1575043694:639609..640310 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:638454..640310 + |
Blast
The following BLAST results are available for this feature:
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